BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484839

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44170.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   715    0.0  


> AT3G44170.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility 
S1 (InterPro:IPR010264); BEST Arabidopsis thaliana 
protein match is: Plant self-incompatibility protein 
S1 family (TAIR:AT5G26090.1); Has 12 Blast hits to 12 proteins 
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:15894790-15895257 FORWARD LENGTH=468
Length=468

 Score =  715 bits (387),  Expect = 0.0
 Identities = 437/462 (95%), Gaps = 0/462 (0%)
 Strand=Plus/Plus

Query  1    GAGGATGAATCCCAAAACCCTAGTTACAAATTTTGTCATCCTTCTCCTTGTACAAATCTC  60
            ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct  3    GAGGATGAATCACAAAACCCTAGTTACAAATTTTGTCATCTTTCTCCTCGTACAAATCTC  62

Query  61   AAACTTATCATTAGAGGTTAACTCGTTACGTGCCTACCACAAGAAAGACTATACATCAGA  120
            |||||||||||||||||| || |||||| |||| ||| ||||||||||||||| ||||||
Sbjct  63   AAACTTATCATTAGAGGTAAATTCGTTAAGTGCGTACAACAAGAAAGACTATAGATCAGA  122

Query  121  ATTTAAGGTAAAGCCAAATACGATTGTACGAATGGTCATCACCAACGATCTATTTGGTGT  180
            ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  123  ATTTAAGGTACGGCCAAATACGGTTGTACGAATGGTCATCACCAACGATCTATTTGGTGT  182

Query  181  CAAGAATGGAAACGCGGGTTTTGTATGCGCAAAGGGTGGTAACAAGGTATGGAAGAAGAG  240
             |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct  183  AAAGAATGGAAACGCGGGTTTTGTATGCGCAAAAGGTGGTAATAAGGTATGGAAGAGGAG  242

Query  241  CAAACCAGGAGACCGGTACGTCGTGGTCGAGTTTAAGTATGATGGTAAGATGAGGCACAC  300
            ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  243  CAAACCAGGAGACCGTTATGTCGTGGTCGAGTTTAAGTATGATGGTAAGATGAGGCACAC  302

Query  301  GTTCACGCACTGCCATCTCCGTTCTAATTTCGGATTTGTCAACTTCCCGGTTAGCGTTCA  360
            ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  303  GTTCACGCATTGCCATCTCCGTTCTAATTTCGGGTTTGTCAACTTCCCAGTTAGCGTTCA  362

Query  361  TCCGGACACATCTGCTCAGTGTTACCCTAGCTACGTTTGTGGTTACTCGGTTCGAAAAGA  420
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  363  TCCTGACACATCTGCTCAGTGTTACCCTAGCTACGTTTGTGGTTACTCGGTTCGGAAAGA  422

Query  421  CGGCGTTTTTTACAAGCCTGAGAAGAAGCTTTATCGATGGAA  462
             || ||||||||||||||||||||||||||||||||||||||
Sbjct  423  TGGGGTTTTTTACAAGCCTGAGAAGAAGCTTTATCGATGGAA  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5