BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484840
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44190.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 1977 0.0
> AT3G44190.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr3:15901797-15903608 REVERSE LENGTH=1517
Length=1517
Score = 1977 bits (1070), Expect = 0.0
Identities = 1273/1367 (93%), Gaps = 29/1367 (2%)
Strand=Plus/Plus
Query 1 ACCACGGCAGGATCCTTCTGCCGTCGGCGACGTCGCTCCTGACGTCACCTCAACACGTTA 60
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 12 ACCACGCCAGGATCCTTCCGCCGTCGGCGACGTCGCTCCTGACGTCACCTCAACACGTAA 71
Query 61 ACCACACAATTAAGTTTTAATT-C-CTCTCTCTCCGTAAACTTAAACC---G---GT-T- 110
|||||||||||||| ||| ||| | |||||||||||| |||||||||| | || |
Sbjct 72 ACCACACAATTAAG-TTT-ATTCCTCTCTCTCTCCGTCAACTTAAACCGGTGTTTGTATA 129
Query 111 T---T-TG--T-ATAT----A--GAAACTGAAATTGGAGAAGATTTGAGAAGCTTTGGA- 156
| | || | |||| | |||||| ||||||||||| ||| |||||||||||||
Sbjct 130 TAAATCTGATTGATATAGAAATCGAAACTCAAATTGGAGAACATTCGAGAAGCTTTGGAT 189
Query 157 -TTTGAATCGCGAAGACATGGAAAAAACCGAATCTGAATCAGGAAAGGGGAAGAGAGTGG 215
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 190 TTTTGAATCACGAAGACATGGAAAAAACAGAATCTGTATCAGGAAAGGGGAAGAGAGTGA 249
Query 216 TGGTTATCGGCGGCGGAATCGCCGGCTCTTTAGCCTCCAAATTTCTTCAATTCGATTCTG 275
| ||||||||||||||||||||||||||| | || || |||||||||||||||||||| |
Sbjct 250 TTGTTATCGGCGGCGGAATCGCCGGCTCTCTCGCTTCGAAATTTCTTCAATTCGATTCCG 309
Query 276 ATCTCACCCTCATTGATCCGAAGGAGTATTTTGAGATCATTTGGGCAAGTTTAAGGTCAA 335
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 310 ATCTCACCCTCATTGATCCGAAGGAGTATTTTGAGATTATTTGGGCAAGTTTAAGGTCAA 369
Query 336 TGGTGGAACCATCTTTTGCTGAAAGATCGGTGATAAACCATAAGAAGTATTTACAAAATG 395
|||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 370 TGGTAGAGCCAGCTTTTGCTGAAAGATCGGTGATAAACCACAAGAAGTATTTACAAAATG 429
Query 396 GTCGCGTTGTGACTTCTCCAGCTGTTAATATCACAGACACCGATGTTGTGACCGCGGATG 455
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 430 GTCGTGTTGTGACTTCTCCAGCGGTTAATATCACAGACACCGATGTTTTGACCGCGGATG 489
Query 456 GGCTTGTCTTTGGGTATGATTATCTTGTCATTGCTACGGGTCACAATGATGTGCTTCCTA 515
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 490 GTCTTGTCTTTGGGTATGATTATCTTGTTATTGCTACTGGTCACAATGATGTGCTTCCTA 549
Query 516 AAACTAGGCAAGAGAAGTTATCTCAATACCAAGCTGAATATGAGAAGATCAAGTCATCTG 575
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 550 AAACTAGGCAAGAGAAGTTATCTCAATACCAAACAGAACATGAGAAGATCAAGTCATCTG 609
Query 576 AATCGATTCTGATTGTTGGTGGAGGTCCATCGGGTGTGGAGCTTGCTGCGGAAATAGCTG 635
| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 610 AGTCGATTCTGATTGTTGGTGGAGGTCCGTCGGGTGTGGAGCTCGCTGCGGAGATAGCTG 669
Query 636 TTGATTTCCCAGAGAAGAAGGTTACTATAGTACACAATGGACCGAGATTGCTGGAATTTG 695
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TCGATTTCCCTGAGAAAAAGGTTACTATAGTACACAATGGACCGAGATTGCTGGAATTTG 729
Query 696 TTGGTCAAAAAGCTGCAGACAAGGCATTTGACTGGATGAAATCTAAGAGAGTTGAAGTGA 755
||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 730 TTGGTCAGAAAGCTGCAGACAAGGCATTAGACTGGATGAAGTCCAAGAGAGTTGAAGTGA 789
Query 756 TATTGAACCAAAGGGTGGATTTGAGTTCAGCTTCGGACGGGAATAAAACATACCGAACAT 815
|||||||||||||||| ||||||||||||||||| || |||| |||||| ||||||||||
Sbjct 790 TATTGAACCAAAGGGTTGATTTGAGTTCAGCTTCAGATGGGAGTAAAACGTACCGAACAT 849
Query 816 CAGGTGGGGAGATGATACACGCAGATTGCCACTTCCTTTGCACTGGAAAACCTTTGTCTT 875
| ||||| |||| ||||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 850 CGGGTGGAGAGACGATACACGCGGATTGTCACTTCCTCTGTACTGGAAAACCTTTGTCTT 909
Query 876 CAGAATGGCTAAAAGGAACTGTTCTGAAAGATAACTTGGATGGCAAAGGAAGGCTTATGG 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CAGAATGGCTAAAAGGAACTGTTCTGAAAGATAACTTGGATGGCAAAGGAAGGCTTATGG 969
Query 936 TCGATGAGTACTTGAGAGTTAAGGGTCGCAAGAATGTATTCGCAATTGGTGATATTACTG 995
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 970 TCGATGAGTACTTGAGAGTTAAGGGTCGCAAGAATGTATTCGCTATTGGTGATATTACTG 1029
Query 996 ATGTCCCGGAGATGAAACAAGGCTACATTGCTGAGAAACACGCCTCTGTAGCTACAAAGA 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 ATGTCCCGGAGATGAAACAAGGCTACATTGCTGAGAAACACGCCTCTGTAGCTACAAAGA 1089
Query 1056 ACATAAAGTTGTTGATGTCTGGTGGGAACGAGAAGAAGATGTCGACTTACAAGCCTGGTC 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 ACATAAAGTTGTTGATGTCTGGTGGGAACGAGAAGAAGATGTCGACTTACAAGCCTGGTC 1149
Query 1116 CGGACATTGCCATAATATCTTTAGGAAGAAAGGACTCGGTTGCTCAGTTCCCATTCATGA 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 CGGACATTGCCATAATATCTTTAGGAAGAAAGGACTCGGTTGCTCAGTTCCCATTCATGA 1209
Query 1176 CAGTCTCGGGTTGCATACCTGGTTTGATCAAATCTAAGGATCTGTTTGTGGGGAAGACGA 1235
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1210 CAGTCTCGGGTTGCATACCTGGTTTGATCAAATCTAAGGATCTGTTTGTCGGGAAGACGA 1269
Query 1236 GGAAGGCAAGAGGGCTGGATCCTAATATTGTGGAGCCTTGAAAGATTGTGTTTATCTGCA 1295
||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| ||
Sbjct 1270 GGAAGGCAAGAGGTCTGGATCCTAACCTTGTGGAGCCTTGAGTGATTGTGCTTATCTTCA 1329
Query 1296 TGATGAGATTCTTCTTGTGCAGGTGCATTTGGT-GTTTTATTTCATC 1341
||||||||||||||||||||||| |||||| || |||| ||||||||
Sbjct 1330 TGATGAGATTCTTCTTGTGCAGGCGCATTTCGTCGTTT-ATTTCATC 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67168329210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5