BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484841
Length=3272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44200.1 | Symbols: ATNEK6, NEK6, IBO1 | NIMA (never in mito... 5077 0.0
> AT3G44200.1 | Symbols: ATNEK6, NEK6, IBO1 | NIMA (never in mitosis,
gene A)-related 6 | chr3:15906440-15911474 FORWARD LENGTH=3328
Length=3328
Score = 5077 bits (2749), Expect = 0.0
Identities = 3148/3330 (95%), Gaps = 69/3330 (2%)
Strand=Plus/Plus
Query 1 ACTCTGCAACAAGTGAACTAAACACagaagaagaagaagaagaaga--agaagacgaga- 57
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 1 ACTCTGCAACAAGTGAACTAAACACAGAAGAAGAAGAAGAAGAAGACGAGACGACGA-AT 59
Query 58 cgacgaatccaga-a-ata--gagagacCTTTGAATATCTTCTTTGTACACAATCTTCTT 113
| | ||| |||| | | | |||||| ||||||||||||| |||||||||||||||||
Sbjct 60 CCA-GAA-ACAGAGAGAGAGGGAGAGAGCTTTGAATATCTT-ATTGTACACAATCTTCTT 116
Query 114 CGCATGG-A-A-----G------G----T-T--TATCCAAAAATGTCTGGATCCGATTTT 153
||||||| | | | | | | |||||||||||||||||||| ||||||
Sbjct 117 CGCATGGAAGATTTCTGTTTCTCGTCACTCTGATATCCAAAAATGTCTGGATCTGATTTT 176
Query 154 GATTTCGCGGCGTTTCGAGTTCAATGCTAAACCATCG-AGCGGTTTCGAATCTCTAG-GA 211
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||
Sbjct 177 GATTTCGCGGCGTTTCGAGTTCAATGCTAAAACATCGAAGCGGTTTCGAATCTCT-GAGA 235
Query 212 ATCGAAGGAAAACGAAGCGTGTAGGTTAGGGAAATTAAGATTACGTTGAAGAGAAGCAAG 271
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 236 ATCGAAGGAAAACGAAGCGTGTAGGTTAGGGAACTTAAGATTACGTTGAAGAGAAGCAAG 295
Query 272 TTTCTCTTAAATCG---C-------AA----C--------TTTTTGGTAAAGCGATGGAG 309
||||||||||||| | || | ||||||||||||||||||||
Sbjct 296 -TTCTCTTAAATCGCAACTTTGGAGAAGTTTCGTTGTTGGTTTTTGGTAAAGCGATGGAG 354
Query 310 TCACGAATGGATCAGTATGAGCTTATGGAACAGATCGGGAGAGGAGCGTTTGGTGCTGCT 369
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCACGAATGGATCAGTACGAGCTTATGGAACAGATCGGGAGAGGAGCGTTTGGTGCTGCT 414
Query 370 ATTTTAGTTCATCATAAAGCTGAGAGAAAGAAGTATGTTTTGAAGAAGATCAGATTAGCT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ATTTTAGTTCATCATAAAGCTGAGAGAAAGAAGTATGTTTTGAAGAAGATCAGATTAGCT 474
Query 430 AGGCAAACGGAACGTTGCCGGAGATCTGCTCATCAAGAGATGTCTTTGATTGCGAGAGTT 489
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 475 AGACAAACGGAACGTTGCCGGAGATCTGCTCATCAAGAGATGTCTTTGATTGCAAGAGTT 534
Query 490 CAACATCCTTATATTGTGGAGTTTAAAGAAGCTTGGGTTGAGAAAGGTTGCTATGTTTGT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CAACATCCTTATATTGTGGAGTTTAAAGAAGCTTGGGTTGAGAAAGGTTGCTATGTTTGT 594
Query 550 ATTGTCACTGGATACTGTGAAGGAGGAGACAGGGCTGAGTTGATGAAAAAGTCAAATGGT 609
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 595 ATTGTCACTGGATACTGTGAAGGAGGAGACATGGCTGAGTTGATGAAAAAGTCAAATGGT 654
Query 610 GTTTATTTTCCTGAGGAGAAACTTTGCAAGTGGTTTACTCAATTATTATTAGCTGTTGAG 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTTTATTTTCCTGAGGAGAAACTTTGCAAGTGGTTTACTCAATTATTATTAGCTGTTGAG 714
Query 670 TATCTGCATTCTAACTATGTTCTACATCGTGATCTAAAGTGTTCCAACATTTTCCTTACA 729
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 715 TATCTGCATTCTAACTATGTTCTACATCGGGATCTAAAGTGTTCCAACATTTTCCTTACA 774
Query 730 AAAGATCAAGACGTCCGCCGTGGGGACTTTGGGCTTGCCAAAACATTGAAGGCGGATGAC 789
||||||||||| || |||| |||||||||||| ||||||||||| |||||||||||||||
Sbjct 775 AAAGATCAAGATGTTCGCCTTGGGGACTTTGGTCTTGCCAAAACTTTGAAGGCGGATGAC 834
Query 790 CTAACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCTGAACTGCTTGCTGATATC 849
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 835 CTAACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCGGAACTGCTTGCTGATATC 894
Query 850 CCTTATGGTTTTAAGTCTGATATCTGGTCACTT-GGCTGTTGTATATATGAGATGGCTGC 908
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 895 CCTTATGGTTTTAAGTCAGATATCTGGTC-CTTAGGCTGTTGTATATATGAGATGGCTGC 953
Query 909 GTATCGGCCTGCTTTCAAAGCTTTTGATATGGCAGGGCTTATAAGCAAGGTTAATCGCTC 968
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GTATCGACCTGCTTTCAAAGCTTTTGATATGGCAGGGCTTATAAGCAAGGTTAATCGCTC 1013
Query 969 CTCAATTGGTCCGTTGCCTCCGTGCTATTCACCATCTTTAAAAGCACTCATCAAGGGAAT 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTCAATTGGTCCGTTGCCTCCGTGCTATTCACCATCTTTAAAAGCACTCATCAAGGGAAT 1073
Query 1029 GTTAAGGAAGAACCCCGAGTATCGGCCAAACGCCTCCGAGATTTTGAAGCATCCTTATTT 1088
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1074 GTTAAGGAAGAACCCCGAGTATCGGCCAAACGCCTCCGAGATTTTGAAGCATCCTTATCT 1133
Query 1089 GCAGCCATATGTAGAGCAGTACCGTCCAGCCCTGTCTGCAGCGTCTATAACTCCAGAAAA 1148
|||||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||||
Sbjct 1134 GCAGCCATATGTTGAGCAGTACCGTCCAACGCTTTCTGCGGCGTCTATAACTCCAGAAAA 1193
Query 1149 GCCTCTCAATTCTCGCGAGGGTCGGAGGAGTATGGCTGAAAGTCAGAACAGCAATAGTTC 1208
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1194 GCCTCTCAATTCTCGCGAGGGTCGGAGGAGTATGGCTGAAAGTCAGAATAGCAATAGTTC 1253
Query 1209 AAGTGAAAAAGATAACTTCTACGTGAGTGaaaaaaaTATCCGATATGTGGTTCCAAGTAA 1268
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1254 AAGTGAAAAAGATAACTTCTACGTGAGTGACAAAAATATCCGATATGTGGTTCCAAGTAA 1313
Query 1269 TGGTAATAAAGTCACTGAGACCGATTCAGGTTTTATCGATGATGAAGACATCCTT-GACC 1327
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1314 TGGTAATAAAGTCACTGAGACCGATTCAGGTTTTGTCGATGATGAAGACATC-TTAGACC 1372
Query 1328 ATGTGCAACAATCAGCTGAAAATGGTAATCTCCAGAGCGTTTCAGCAACAAAACCAGATA 1387
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1373 ATGTGCAACAATCAGCTGAAAATGGTAATCTCCAGAGTGTTTCAGCAACAAAACCAGATG 1432
Query 1388 GCCATGGGATTTTAAAGCCCGTACACAGTGACCATCGACCAGACGTTATTCAACCAAGGC 1447
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1433 GCCATGGGATTTTAAAGCCCGTACACAGTGACCAGCGACCAGACGTTATTCAACCAAGGC 1492
Query 1448 ACCCAAAAACTATCAGAAACATCATGATGGTTTTGAAAGAAGAGAAAGCTCGAGAAAATG 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 ACCCAAAAACTATCAGAAACATCATGATGGTTTTGAAAGAAGAGAAAGCTCGAGAAAATG 1552
Query 1508 GTTCACCCATGAGATCTAATCGAAGTAGACCTTCTAGTGTTCCGACACAGAAGAATAATA 1567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GTTCACCCATGAGATCTAATCGAAGTAGACCTTCTAGTGTTCCGACACAGAAGAATAATG 1612
Query 1568 TTGAAACTCCATCAAAGATTCCCAAACTCGGTGACATTGCTCATAGCTCCAAGACTAACG 1627
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1613 TTGAAACTCCATCAAAGATTCCCAAACTTGGTGACATTGCTCATAGCTCCAAGACTAACG 1672
Query 1628 CAAATATGCCTATTCCACCATCAAAGCTGGCCTCTGATTCCGCAAGGACACCAGGATCAT 1687
||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1673 CAAGTACGCCTATTCCACCATCAAAGCTGGCCTCTGATTCCGCAAGGACTCCAGGATCAT 1732
Query 1688 TTCCACCGAAGCATCACATGCCAATGATTGACTCTTCTCCAAAACTTAAGCCTAGAAATG 1747
||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1733 TTCCACCAAAGCATCATATGCCAGTGATTGACTCTTCTCCAAAACTTAAGCCTAGAAACG 1792
Query 1748 ACAGAATTTCACCTTCTCCTGCTGCTAAACATGAGGCTGAAGAGGCAATGTCAGTTAAGC 1807
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1793 ACAGAATTTCACCTTCTCCTGCTGCTAAACATGAGGCTGAAGAGGCGATGTCAGTTAAGC 1852
Query 1808 GTAGGCAAAGAACACCTCCTACTTTGCCAAGAAGAACGTCTTTGATAGCGCACCAGTCTA 1867
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1853 GTAGGCAAAGAACACCTCCTACTTTGCCAAGAAGAACGTCTTTGATAGCGCACCAGTCGA 1912
Query 1868 GACAATTAGGAGCAGATATTCCAAATATGGCAGCCAAGGAAACCGCGAAGCTACATCCAT 1927
||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1913 GACAACTAGGAGCAGATATTTCAAATATGGCAGCAAAGGAAACCGCGAAGCTACATCCAT 1972
Query 1928 CTGTGCCATCAGAGTCTGAAACTAATTCTCATCAATCTCGTGTCCATGCTTCTCCTGTGA 1987
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1973 CTGTGCCATCAGAGTCTGAAACTAATTCTCATCAATCTCGTGTTCATGCTTCTCCTGTGA 2032
Query 1988 GTACGACGCTGGAGCCAAAGAGAACCTCTGTTGGATCTTCCAAAGGAATGCAGAGTGAAA 2047
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2033 GTACGACGCCAGAGCCAAAGAGAACCTCTGTTGGATCTGCCAAAGGAATGCAGAGTGAAA 2092
Query 2048 GCAGCAATTCTATCTCATCGTCGTTGTCCATGCAGGCATTTGAGCTCTGTGATGATGCTT 2107
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2093 GCAGCAACTCTATCTCGTCGTCGTTGTCCATGCAGGCATTTGAGCTCTGTGATGATGCTT 2152
Query 2108 CCACCCCATATGTCGACATGACAGCACATACAACTCCTGATGACCACAGAAGATCCTGTC 2167
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2153 CCACCCCATATATTGACATGACAGAACATACAACTCCTGATGACCACAGAAGATCCTGTC 2212
Query 2168 ACAGTGAATACTCGTATTCATTTCCAGATATCTCCTCAGAGATGATGATCCGCAGAGAAG 2227
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2213 ACAGTGAATACTCATATTCATTTCCAGATATCTCCTCAGAGATGATGATCCGTAGAGATG 2272
Query 2228 AACACAGAACCAGTATGCGGCTGACTGAAATTCCCGACTCTGTTTCTGGTGTTCAAAACA 2287
|||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2273 AACATAGCACCAGTATGCGGCTGACTGAAATTCCCGACTCTGTTTCCGGTGTACAAAACA 2332
Query 2288 CCATTGCCCATCATCAGCCGGAAGGAGAGCAAGGAAGCTCTCCCATTGTGCCCAAAGATG 2347
||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||
Sbjct 2333 CCATTGCCCATCATCAGCCAGAAAGAGAGCAAGGAAGCTGTCCCACTGTGCTCAAAGATG 2392
Query 2348 ATAGCCCTACCACATTACAGAGCTACGAGCCTAACGCATCACAACGA-CAACATGGTGAT 2406
|||| ||| | |||||||||||||||||||||||| ||||||||| | ||||| ||||||
Sbjct 2393 ATAGTCCTGCAACATTACAGAGCTACGAGCCTAACACATCACAAC-ATCAACACGGTGAT 2451
Query 2407 GACAAATTCACAGTCAAAGAATTCGTCTCCTCTGTTCCCGGAGCCGCACCAATGCCTTTG 2466
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2452 GACAAATTCACAGTCAAAGAATTCGTCTCCTCTGTTCCCGGACCCGCACCATTGCCTTTG 2511
Query 2467 CATGTTGAACCATCCCACCAAGTGAATTCCCACTCGGATAACAAAACAAGCGTAGTGTCT 2526
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2512 CATGTTGAACCATCACACCAAGTGAATTCCCACTCGGATAACAAAACAAGCGTAATGTCT 2571
Query 2527 CAGAACTCAGCTCTTGAGAAGAACAACAACCCTTCCCATCTTCATCCTGTGGTTGATGAT 2586
|||||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct 2572 CAGAACTCAGCTCTTGAGAAGAACAACAGTCATTCCCATCCTCATCCCGTGGTTGATGAT 2631
Query 2587 GTCATACATGTTATCCGTCACAGCAGTTTCCGGGTAGGGAGCGACCAGCCGGTCATGGAA 2646
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2632 GTCATACATGTTATTCGCCACAGCAGTTTCCGAGTAGGGAGCGACCAGCCGGTCATGGAA 2691
Query 2647 AGTGTTGAAGTCGGTGTCCAGAACGTCGACATGGGGAAACTCATAAACGTGGTGAGAGAT 2706
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 2692 AGTGTTGAAGTCGGTGTCCAAAACGTCGATATGGGGAAACTCATAAACGTTGTGAGAGAT 2751
Query 2707 GAAATGGAAGTGAGAAAAGTAGCCACTCCCTCTGAATCACCCACCACGAGATCAATCATC 2766
||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||
Sbjct 2752 GAAATGGAAGTGAGAAAAGGAGCCACTCCCTCAGAATCACCCACCACAAGATCGATCATC 2811
Query 2767 TCAGAGCCTGACTCAAGAACCGAGCCCCGTCCTGAAGAACCTGACCCCATCACCAATTAC 2826
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 2812 TCAGAGCCTGACTCAAGAACCGAGCCTCGTCCTAAAGAACCAGACCCCATCACCAATTAC 2871
Query 2827 TCAGAAACAAAGAGCTTTAACTCCTGCTCTGATTCTTCACCAGCTGAGACAAGATCTAAC 2886
||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 2872 TCAGAAACAAAGAGCTTTAACTCCTGCTCGGATTCTTCACCAGCTGAGACCAGAACTAAC 2931
Query 2887 TCATTCGTGCCTGAAGAGGAAACAACTCCGACTCCACCTGTGAAAGAGACGTTGGACATC 2946
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2932 TCATTCGTGCCTGAAGAGGAAACAACTCCGACTCCACCTGTTAAAGAGACGTTGGACATC 2991
Query 2947 AAGTCGTTCAGACAGAGAGCAGAGGCGCTTGAAGGTTTATTGGAACTATCTGCGGATTTG 3006
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2992 AAGTCGTTCAGACAGAGAGCAGAAGCGCTTGAAGGTCTATTGGAACTATCTGCGGATTTG 3051
Query 3007 CTGGAACAGAGCAGGCTCGAAGAGTTAGCCATCGTGTTGCAGCCGTTTGGGAAGAACAAA 3066
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 3052 CTGGAACAGAGCAGGCTCGAAGAGCTAGCCATTGTGTTGCAGCCGTTTGGGAAGAACAAA 3111
Query 3067 GTTTCGCCTAGAGAAACCGCTATTTGGTTGGCAAAGAGTTTGAAAGGAATGATGATCGAA 3126
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3112 GTTTCGCCTCGAGAAACCGCTATTTGGTTGGCCAAGAGTTTGAAAGGAATGATGATCGAA 3171
Query 3127 GACATCAATAATAATAATAGCAGTGGAAGCTCAAGGAATTGTTCATGAAGGTAAATTATC 3186
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 3172 GACATCAATAATAATAATAGCAGTGGCAGCTCCAGGAATTGTTCATGAAGGTAAATTATC 3231
Query 3187 ATACAAGCATTTTCAACCAAACTCTA----GTGTTACAttttttttCTCTAAAACGTTTA 3242
|||||||||||| |||||||||||| ||||||| ||||||| ||||| ||| ||||
Sbjct 3232 ATACAAGCATTTGCAACCAAACTCTCTTCTGTGTTAC-TTTTTTT-CTCTATAACATTTA 3289
Query 3243 TATTGTCATAAAATAACAATTCTTTCATTA 3272
||||||| ||||||||||||||||||||||
Sbjct 3290 TATTGTCGTAAAATAACAATTCTTTCATTA 3319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162791730035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5