BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484841 Length=3272 Score E Sequences producing significant alignments: (Bits) Value AT3G44200.1 | Symbols: ATNEK6, NEK6, IBO1 | NIMA (never in mito... 5077 0.0 > AT3G44200.1 | Symbols: ATNEK6, NEK6, IBO1 | NIMA (never in mitosis, gene A)-related 6 | chr3:15906440-15911474 FORWARD LENGTH=3328 Length=3328 Score = 5077 bits (2749), Expect = 0.0 Identities = 3148/3330 (95%), Gaps = 69/3330 (2%) Strand=Plus/Plus Query 1 ACTCTGCAACAAGTGAACTAAACACagaagaagaagaagaagaaga--agaagacgaga- 57 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | Sbjct 1 ACTCTGCAACAAGTGAACTAAACACAGAAGAAGAAGAAGAAGAAGACGAGACGACGA-AT 59 Query 58 cgacgaatccaga-a-ata--gagagacCTTTGAATATCTTCTTTGTACACAATCTTCTT 113 | | ||| |||| | | | |||||| ||||||||||||| ||||||||||||||||| Sbjct 60 CCA-GAA-ACAGAGAGAGAGGGAGAGAGCTTTGAATATCTT-ATTGTACACAATCTTCTT 116 Query 114 CGCATGG-A-A-----G------G----T-T--TATCCAAAAATGTCTGGATCCGATTTT 153 ||||||| | | | | | | |||||||||||||||||||| |||||| Sbjct 117 CGCATGGAAGATTTCTGTTTCTCGTCACTCTGATATCCAAAAATGTCTGGATCTGATTTT 176 Query 154 GATTTCGCGGCGTTTCGAGTTCAATGCTAAACCATCG-AGCGGTTTCGAATCTCTAG-GA 211 ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | || Sbjct 177 GATTTCGCGGCGTTTCGAGTTCAATGCTAAAACATCGAAGCGGTTTCGAATCTCT-GAGA 235 Query 212 ATCGAAGGAAAACGAAGCGTGTAGGTTAGGGAAATTAAGATTACGTTGAAGAGAAGCAAG 271 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 236 ATCGAAGGAAAACGAAGCGTGTAGGTTAGGGAACTTAAGATTACGTTGAAGAGAAGCAAG 295 Query 272 TTTCTCTTAAATCG---C-------AA----C--------TTTTTGGTAAAGCGATGGAG 309 ||||||||||||| | || | |||||||||||||||||||| Sbjct 296 -TTCTCTTAAATCGCAACTTTGGAGAAGTTTCGTTGTTGGTTTTTGGTAAAGCGATGGAG 354 Query 310 TCACGAATGGATCAGTATGAGCTTATGGAACAGATCGGGAGAGGAGCGTTTGGTGCTGCT 369 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 355 TCACGAATGGATCAGTACGAGCTTATGGAACAGATCGGGAGAGGAGCGTTTGGTGCTGCT 414 Query 370 ATTTTAGTTCATCATAAAGCTGAGAGAAAGAAGTATGTTTTGAAGAAGATCAGATTAGCT 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 ATTTTAGTTCATCATAAAGCTGAGAGAAAGAAGTATGTTTTGAAGAAGATCAGATTAGCT 474 Query 430 AGGCAAACGGAACGTTGCCGGAGATCTGCTCATCAAGAGATGTCTTTGATTGCGAGAGTT 489 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 475 AGACAAACGGAACGTTGCCGGAGATCTGCTCATCAAGAGATGTCTTTGATTGCAAGAGTT 534 Query 490 CAACATCCTTATATTGTGGAGTTTAAAGAAGCTTGGGTTGAGAAAGGTTGCTATGTTTGT 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 CAACATCCTTATATTGTGGAGTTTAAAGAAGCTTGGGTTGAGAAAGGTTGCTATGTTTGT 594 Query 550 ATTGTCACTGGATACTGTGAAGGAGGAGACAGGGCTGAGTTGATGAAAAAGTCAAATGGT 609 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 595 ATTGTCACTGGATACTGTGAAGGAGGAGACATGGCTGAGTTGATGAAAAAGTCAAATGGT 654 Query 610 GTTTATTTTCCTGAGGAGAAACTTTGCAAGTGGTTTACTCAATTATTATTAGCTGTTGAG 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 GTTTATTTTCCTGAGGAGAAACTTTGCAAGTGGTTTACTCAATTATTATTAGCTGTTGAG 714 Query 670 TATCTGCATTCTAACTATGTTCTACATCGTGATCTAAAGTGTTCCAACATTTTCCTTACA 729 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 715 TATCTGCATTCTAACTATGTTCTACATCGGGATCTAAAGTGTTCCAACATTTTCCTTACA 774 Query 730 AAAGATCAAGACGTCCGCCGTGGGGACTTTGGGCTTGCCAAAACATTGAAGGCGGATGAC 789 ||||||||||| || |||| |||||||||||| ||||||||||| ||||||||||||||| Sbjct 775 AAAGATCAAGATGTTCGCCTTGGGGACTTTGGTCTTGCCAAAACTTTGAAGGCGGATGAC 834 Query 790 CTAACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCTGAACTGCTTGCTGATATC 849 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 835 CTAACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCGGAACTGCTTGCTGATATC 894 Query 850 CCTTATGGTTTTAAGTCTGATATCTGGTCACTT-GGCTGTTGTATATATGAGATGGCTGC 908 ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 895 CCTTATGGTTTTAAGTCAGATATCTGGTC-CTTAGGCTGTTGTATATATGAGATGGCTGC 953 Query 909 GTATCGGCCTGCTTTCAAAGCTTTTGATATGGCAGGGCTTATAAGCAAGGTTAATCGCTC 968 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 GTATCGACCTGCTTTCAAAGCTTTTGATATGGCAGGGCTTATAAGCAAGGTTAATCGCTC 1013 Query 969 CTCAATTGGTCCGTTGCCTCCGTGCTATTCACCATCTTTAAAAGCACTCATCAAGGGAAT 1028 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 CTCAATTGGTCCGTTGCCTCCGTGCTATTCACCATCTTTAAAAGCACTCATCAAGGGAAT 1073 Query 1029 GTTAAGGAAGAACCCCGAGTATCGGCCAAACGCCTCCGAGATTTTGAAGCATCCTTATTT 1088 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1074 GTTAAGGAAGAACCCCGAGTATCGGCCAAACGCCTCCGAGATTTTGAAGCATCCTTATCT 1133 Query 1089 GCAGCCATATGTAGAGCAGTACCGTCCAGCCCTGTCTGCAGCGTCTATAACTCCAGAAAA 1148 |||||||||||| ||||||||||||||| | || ||||| |||||||||||||||||||| Sbjct 1134 GCAGCCATATGTTGAGCAGTACCGTCCAACGCTTTCTGCGGCGTCTATAACTCCAGAAAA 1193 Query 1149 GCCTCTCAATTCTCGCGAGGGTCGGAGGAGTATGGCTGAAAGTCAGAACAGCAATAGTTC 1208 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1194 GCCTCTCAATTCTCGCGAGGGTCGGAGGAGTATGGCTGAAAGTCAGAATAGCAATAGTTC 1253 Query 1209 AAGTGAAAAAGATAACTTCTACGTGAGTGaaaaaaaTATCCGATATGTGGTTCCAAGTAA 1268 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1254 AAGTGAAAAAGATAACTTCTACGTGAGTGACAAAAATATCCGATATGTGGTTCCAAGTAA 1313 Query 1269 TGGTAATAAAGTCACTGAGACCGATTCAGGTTTTATCGATGATGAAGACATCCTT-GACC 1327 |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| Sbjct 1314 TGGTAATAAAGTCACTGAGACCGATTCAGGTTTTGTCGATGATGAAGACATC-TTAGACC 1372 Query 1328 ATGTGCAACAATCAGCTGAAAATGGTAATCTCCAGAGCGTTTCAGCAACAAAACCAGATA 1387 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1373 ATGTGCAACAATCAGCTGAAAATGGTAATCTCCAGAGTGTTTCAGCAACAAAACCAGATG 1432 Query 1388 GCCATGGGATTTTAAAGCCCGTACACAGTGACCATCGACCAGACGTTATTCAACCAAGGC 1447 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1433 GCCATGGGATTTTAAAGCCCGTACACAGTGACCAGCGACCAGACGTTATTCAACCAAGGC 1492 Query 1448 ACCCAAAAACTATCAGAAACATCATGATGGTTTTGAAAGAAGAGAAAGCTCGAGAAAATG 1507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1493 ACCCAAAAACTATCAGAAACATCATGATGGTTTTGAAAGAAGAGAAAGCTCGAGAAAATG 1552 Query 1508 GTTCACCCATGAGATCTAATCGAAGTAGACCTTCTAGTGTTCCGACACAGAAGAATAATA 1567 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1553 GTTCACCCATGAGATCTAATCGAAGTAGACCTTCTAGTGTTCCGACACAGAAGAATAATG 1612 Query 1568 TTGAAACTCCATCAAAGATTCCCAAACTCGGTGACATTGCTCATAGCTCCAAGACTAACG 1627 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1613 TTGAAACTCCATCAAAGATTCCCAAACTTGGTGACATTGCTCATAGCTCCAAGACTAACG 1672 Query 1628 CAAATATGCCTATTCCACCATCAAAGCTGGCCTCTGATTCCGCAAGGACACCAGGATCAT 1687 ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1673 CAAGTACGCCTATTCCACCATCAAAGCTGGCCTCTGATTCCGCAAGGACTCCAGGATCAT 1732 Query 1688 TTCCACCGAAGCATCACATGCCAATGATTGACTCTTCTCCAAAACTTAAGCCTAGAAATG 1747 ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| | Sbjct 1733 TTCCACCAAAGCATCATATGCCAGTGATTGACTCTTCTCCAAAACTTAAGCCTAGAAACG 1792 Query 1748 ACAGAATTTCACCTTCTCCTGCTGCTAAACATGAGGCTGAAGAGGCAATGTCAGTTAAGC 1807 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1793 ACAGAATTTCACCTTCTCCTGCTGCTAAACATGAGGCTGAAGAGGCGATGTCAGTTAAGC 1852 Query 1808 GTAGGCAAAGAACACCTCCTACTTTGCCAAGAAGAACGTCTTTGATAGCGCACCAGTCTA 1867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1853 GTAGGCAAAGAACACCTCCTACTTTGCCAAGAAGAACGTCTTTGATAGCGCACCAGTCGA 1912 Query 1868 GACAATTAGGAGCAGATATTCCAAATATGGCAGCCAAGGAAACCGCGAAGCTACATCCAT 1927 ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1913 GACAACTAGGAGCAGATATTTCAAATATGGCAGCAAAGGAAACCGCGAAGCTACATCCAT 1972 Query 1928 CTGTGCCATCAGAGTCTGAAACTAATTCTCATCAATCTCGTGTCCATGCTTCTCCTGTGA 1987 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1973 CTGTGCCATCAGAGTCTGAAACTAATTCTCATCAATCTCGTGTTCATGCTTCTCCTGTGA 2032 Query 1988 GTACGACGCTGGAGCCAAAGAGAACCTCTGTTGGATCTTCCAAAGGAATGCAGAGTGAAA 2047 ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2033 GTACGACGCCAGAGCCAAAGAGAACCTCTGTTGGATCTGCCAAAGGAATGCAGAGTGAAA 2092 Query 2048 GCAGCAATTCTATCTCATCGTCGTTGTCCATGCAGGCATTTGAGCTCTGTGATGATGCTT 2107 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2093 GCAGCAACTCTATCTCGTCGTCGTTGTCCATGCAGGCATTTGAGCTCTGTGATGATGCTT 2152 Query 2108 CCACCCCATATGTCGACATGACAGCACATACAACTCCTGATGACCACAGAAGATCCTGTC 2167 ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2153 CCACCCCATATATTGACATGACAGAACATACAACTCCTGATGACCACAGAAGATCCTGTC 2212 Query 2168 ACAGTGAATACTCGTATTCATTTCCAGATATCTCCTCAGAGATGATGATCCGCAGAGAAG 2227 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 2213 ACAGTGAATACTCATATTCATTTCCAGATATCTCCTCAGAGATGATGATCCGTAGAGATG 2272 Query 2228 AACACAGAACCAGTATGCGGCTGACTGAAATTCCCGACTCTGTTTCTGGTGTTCAAAACA 2287 |||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 2273 AACATAGCACCAGTATGCGGCTGACTGAAATTCCCGACTCTGTTTCCGGTGTACAAAACA 2332 Query 2288 CCATTGCCCATCATCAGCCGGAAGGAGAGCAAGGAAGCTCTCCCATTGTGCCCAAAGATG 2347 ||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||| Sbjct 2333 CCATTGCCCATCATCAGCCAGAAAGAGAGCAAGGAAGCTGTCCCACTGTGCTCAAAGATG 2392 Query 2348 ATAGCCCTACCACATTACAGAGCTACGAGCCTAACGCATCACAACGA-CAACATGGTGAT 2406 |||| ||| | |||||||||||||||||||||||| ||||||||| | ||||| |||||| Sbjct 2393 ATAGTCCTGCAACATTACAGAGCTACGAGCCTAACACATCACAAC-ATCAACACGGTGAT 2451 Query 2407 GACAAATTCACAGTCAAAGAATTCGTCTCCTCTGTTCCCGGAGCCGCACCAATGCCTTTG 2466 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 2452 GACAAATTCACAGTCAAAGAATTCGTCTCCTCTGTTCCCGGACCCGCACCATTGCCTTTG 2511 Query 2467 CATGTTGAACCATCCCACCAAGTGAATTCCCACTCGGATAACAAAACAAGCGTAGTGTCT 2526 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2512 CATGTTGAACCATCACACCAAGTGAATTCCCACTCGGATAACAAAACAAGCGTAATGTCT 2571 Query 2527 CAGAACTCAGCTCTTGAGAAGAACAACAACCCTTCCCATCTTCATCCTGTGGTTGATGAT 2586 |||||||||||||||||||||||||||| | |||||||| |||||| |||||||||||| Sbjct 2572 CAGAACTCAGCTCTTGAGAAGAACAACAGTCATTCCCATCCTCATCCCGTGGTTGATGAT 2631 Query 2587 GTCATACATGTTATCCGTCACAGCAGTTTCCGGGTAGGGAGCGACCAGCCGGTCATGGAA 2646 |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 2632 GTCATACATGTTATTCGCCACAGCAGTTTCCGAGTAGGGAGCGACCAGCCGGTCATGGAA 2691 Query 2647 AGTGTTGAAGTCGGTGTCCAGAACGTCGACATGGGGAAACTCATAAACGTGGTGAGAGAT 2706 |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 2692 AGTGTTGAAGTCGGTGTCCAAAACGTCGATATGGGGAAACTCATAAACGTTGTGAGAGAT 2751 Query 2707 GAAATGGAAGTGAGAAAAGTAGCCACTCCCTCTGAATCACCCACCACGAGATCAATCATC 2766 ||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||| Sbjct 2752 GAAATGGAAGTGAGAAAAGGAGCCACTCCCTCAGAATCACCCACCACAAGATCGATCATC 2811 Query 2767 TCAGAGCCTGACTCAAGAACCGAGCCCCGTCCTGAAGAACCTGACCCCATCACCAATTAC 2826 |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| Sbjct 2812 TCAGAGCCTGACTCAAGAACCGAGCCTCGTCCTAAAGAACCAGACCCCATCACCAATTAC 2871 Query 2827 TCAGAAACAAAGAGCTTTAACTCCTGCTCTGATTCTTCACCAGCTGAGACAAGATCTAAC 2886 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct 2872 TCAGAAACAAAGAGCTTTAACTCCTGCTCGGATTCTTCACCAGCTGAGACCAGAACTAAC 2931 Query 2887 TCATTCGTGCCTGAAGAGGAAACAACTCCGACTCCACCTGTGAAAGAGACGTTGGACATC 2946 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2932 TCATTCGTGCCTGAAGAGGAAACAACTCCGACTCCACCTGTTAAAGAGACGTTGGACATC 2991 Query 2947 AAGTCGTTCAGACAGAGAGCAGAGGCGCTTGAAGGTTTATTGGAACTATCTGCGGATTTG 3006 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 2992 AAGTCGTTCAGACAGAGAGCAGAAGCGCTTGAAGGTCTATTGGAACTATCTGCGGATTTG 3051 Query 3007 CTGGAACAGAGCAGGCTCGAAGAGTTAGCCATCGTGTTGCAGCCGTTTGGGAAGAACAAA 3066 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 3052 CTGGAACAGAGCAGGCTCGAAGAGCTAGCCATTGTGTTGCAGCCGTTTGGGAAGAACAAA 3111 Query 3067 GTTTCGCCTAGAGAAACCGCTATTTGGTTGGCAAAGAGTTTGAAAGGAATGATGATCGAA 3126 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 3112 GTTTCGCCTCGAGAAACCGCTATTTGGTTGGCCAAGAGTTTGAAAGGAATGATGATCGAA 3171 Query 3127 GACATCAATAATAATAATAGCAGTGGAAGCTCAAGGAATTGTTCATGAAGGTAAATTATC 3186 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 3172 GACATCAATAATAATAATAGCAGTGGCAGCTCCAGGAATTGTTCATGAAGGTAAATTATC 3231 Query 3187 ATACAAGCATTTTCAACCAAACTCTA----GTGTTACAttttttttCTCTAAAACGTTTA 3242 |||||||||||| |||||||||||| ||||||| ||||||| ||||| ||| |||| Sbjct 3232 ATACAAGCATTTGCAACCAAACTCTCTTCTGTGTTAC-TTTTTTT-CTCTATAACATTTA 3289 Query 3243 TATTGTCATAAAATAACAATTCTTTCATTA 3272 ||||||| |||||||||||||||||||||| Sbjct 3290 TATTGTCGTAAAATAACAATTCTTTCATTA 3319 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 162791730035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5