BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484842
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44260.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1332 0.0
AT5G22250.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 678 0.0
> AT3G44260.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:15952045-15953084 REVERSE
LENGTH=1040
Length=1040
Score = 1332 bits (721), Expect = 0.0
Identities = 839/895 (94%), Gaps = 12/895 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATCATCAAATCAAACAC-ATATAACAAACCATGTGGCGGTATCACCGTCGTGAC 59
||||||||||| ||| ||||| | | || |||||| | | |||| |||| ||||||||
Sbjct 30 ATGGCGATCATTAAACCAAAC-CGAGATCTCAAACC--G-GACGGTGTCACAGTCGTGAC 85
Query 60 TCGTGAAGTGTGGGCGGAGAATCTCGAATCAGAATTTGAGTTAATCAGCGAAATCATCGA 119
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 86 TCGTGAAGTCTGGGCGGAGAATCTCGAATCAGAATTTGAACTAATCAGCGAAATCATCGA 145
Query 120 CGATTATCCATTTATCTCAATGGACACTGAATTTCCCGGCGTGATTTTCAAATCCGATCT 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 146 CGATTATCCATTTATCTCAATGGACACAGAATTTCCCGGCGTGATTTTCAAATCCGATCT 205
Query 180 CCGATTTACAAATCCCGCCGATCTCTATAGTCTTCTTAAAGCTAACGTCGACGCGCTTAG 239
||| ||||| ||||||| |||||| |||| |||||||||||||||||||||||| || ||
Sbjct 206 CCGGTTTACGAATCCCGACGATCTTTATACTCTTCTTAAAGCTAACGTCGACGCTCTCAG 265
Query 240 TTTAATCCAAGTCGGTCTCACTCTCTCTGATGCTAACGGTAACCTCCCAGATCTCGGTGA 299
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 266 CTTAATCCAAGTCGGTCTCACTCTCTCTGATGTTAACGGTAACCTCCCAGACCTCGGTGA 325
Query 300 --A-AATCACCGAGGATTCATCTGGGAGTTCAATTTCCGAGACTTTGATGTGGCGCGTGA 356
| |||||||||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 326 CGATCTTCACCGAGGATTCATCTGGGAGTTTAATTTCCGTGACTTCGACGTGGCGCGTGA 385
Query 357 CGCACACGCGCCTGATTCGATCGAGTTACTTCGTCGGCAAGGTATCGATTTCGAGCGGAA 416
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 386 CGCACACGCGCCTGATTCGATCGAGTTGCTTCGTCGGCAAGGTATCGATTTTGAGCGGAA 445
Query 417 TTGTCGCGACGGTGTTGATTCGGAGAGGTTTGCGGAGTTGATGATGTCGTCGGGGCTTGT 476
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 446 TTGTCGCGACGGTGTTGAGTCGGAGAGGTTTGCGGAGCTGATGATGTCGTCGGGGCTTGT 505
Query 477 TTGTAATGAGGATGTGAGCTGGGTGACGTTTCATAGCGCGTACGATTTCGGTTACTTGAT 536
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 506 TTGTAATGAGGAAGTGAGCTGGGTGACGTTTCATAGCGCGTATGATTTCGGTTACTTGAT 565
Query 537 GAAGATTCTCACGCGCCGTGAATTGCCCGGCGCGTTGGGTGAGTTTAAGCGCGTGATGAG 596
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 566 GAAGATTCTCACGCGCCGAGAATTGCCCGGCGCGTTGGGGGAGTTTAAGCGCGTGATGAG 625
Query 597 AGTGTTGTTTGGTGAGCGCGTGTATGATGTGAAGCATATGATGAAGTTTTGTGAGAGGAG 656
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 626 AGTGTTGTTTGGGGAGCGTGTGTATGATGTGAAGCATATGATGAAGTTTTGTGAAAGGAG 685
Query 657 ATTGTTTGGTGGTTTAGACCGGGTTGCTAGGACGCTTGAGGTTAACCGGGCGGTTGGGAA 716
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 686 ATTGTTTGGTGGTTTGGACCGGGTTGCAAGGACGCTTGAGGTTAACCGGGCGGTTGGGAA 745
Query 717 ATGTCATCAAGCCGGTTCGGATAGTTTGCTTACGTGGCATGCGTTTCAGAGGATGAGAGA 776
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 746 ATGTCATCAAGCTGGTTCGGATAGTTTGCTTACGTGGCATGCGTTTCAGAGGATGAGGGA 805
Query 777 TTTGTATTTTGTTCAAGATGGGCCGGAGAAACATGCTGGGGTTTTGTATGGGCTTGAGGT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TTTGTATTTTGTTCAAGATGGGCCGGAGAAACATGCTGGGGTTTTGTATGGGCTTGAGGT 865
Query 837 TTTTTAAGCGGTTTACttttttttttttATAATTCAAATTCAATTAATTAACTCA 891
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 866 TTTTTAAGGGGTTT-CTTTTTTTTT---ATAATTCAAATTCAATTAATTAACTCA 916
> AT5G22250.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:7365532-7366778 REVERSE
LENGTH=1247
Length=1247
Score = 678 bits (367), Expect = 0.0
Identities = 679/825 (82%), Gaps = 40/825 (5%)
Strand=Plus/Plus
Query 53 TCGTGACTCGTGAAGTGTGGGCGGAGAATCTCGAATCAGAATTTGAGTTAATCAGCGAAA 112
|||||| |||||| || ||||| | |||||||| ||||| ||||| ||||||| | ||
Sbjct 372 TCGTGATTCGTGACGTTTGGGCTTATAATCTCGAGTCAGAGTTTGACCTAATCAGAGGAA 431
Query 113 TCATCGACGATTATCCATTTATCTCAATGGACACTGAATTTCCCGGCGTGATTTTCAA-- 170
|| |||| ||||| ||||| ||||||||||| || ||||||||||||||||||| |||
Sbjct 432 TCGTCGAAGATTACCCATTCATCTCAATGGATACAGAATTTCCCGGCGTGATTTACAAGG 491
Query 171 ---ATC-CGA---TCTCCGATTTACAAATCCC-GCCGATCTCTATAGTCTTCTTAAAGCT 222
||| ||| |||||| | ||| ||| ||||||| | |||||| ||| |
Sbjct 492 CGGATCTCGACGTTCTCCGCCGTGGAAA-CCCTAATTATCTCTACAATCTTCTCAAATCC 550
Query 223 AACGTCGACGCGCTT-AGTTTAATCCAAGTCGGTCTCACTCTCTCTGATGCTAACGGTAA 281
||||| ||||| || ||||| |||||||||||||| |||||||| || || |||| ||
Sbjct 551 AACGTTGACGC-TTTAAGTTTGATCCAAGTCGGTCTTACTCTCTCCGACGCCGACGGAAA 609
Query 282 CCTCCCAGATCT---CGGTGAAAATCACCGAGGATTCATCTGGGAGTTCAATTTCCGAGA 338
|||||||||||| |||| |||| |||| ||| ||||||||| ||||||||||| ||
Sbjct 610 CCTCCCAGATCTCGGCGGTCAAAAAAACCGTCGATACATCTGGGAATTCAATTTCCGTGA 669
Query 339 CTTTGATGTGGCGCGTGA-CGCACACGCGCCTGATTCGATCGAGTTACTTCGTCGGCAAG 397
||| || |||| |||||| | ||||||| ||||||||||||||| |||| ||||| || |
Sbjct 670 CTTCGACGTGGAGCGTGATC-CACACGCTCCTGATTCGATCGAGCTACTCCGTCGTCACG 728
Query 398 GTATCGATTTCGAGCGGAATTGTCGCGACGGTGTTGATTCGGAGAGGTTTGCGGAGTTGA 457
| ||||||||||||||||| ||||||| |||||||| ||||||||||| |||||| |||
Sbjct 729 GGATCGATTTCGAGCGGAACCGTCGCGAAGGTGTTGAATCGGAGAGGTTCGCGGAGCTGA 788
Query 458 TGATGTCGTCGGGGCTTG-TTTGTAATGAGGATGTGAGCTGGGTGACGTTTCATAGCGCG 516
||||||| |||||| ||| | ||||| ||| ||||||||||||||||||||| ||||||
Sbjct 789 TGATGTCATCGGGG-TTGATCTGTAACGAGTCTGTGAGCTGGGTGACGTTTCACAGCGCG 847
Query 517 TACGATTTCGGTTA-CTTGATGAAGATTCTCACGCGCCGTG-A-ATTGCCCGG-CGCGTT 572
|| ||||| ||||| |||| ||||||||||||||||||| | | || |||| |||||
Sbjct 848 TATGATTTTGGTTACCTTG-TGAAGATTCTCACGCGCCG-GCAGCTT--CCGGTGGCGTT 903
Query 573 GGGTGAG-TTTAAGCGCG-TGATGAGAG-TGTTGTTTGGTGAGCGCGTGTATGATGTGAA 629
| ||||| ||| || | | || | |||| | || || ||||| | || |||||||||||
Sbjct 904 GCGTGAGTTTTTAG-G-GTTGCTTAGAGCT-TTCTTCGGTGATAGGGTTTATGATGTGAA 960
Query 630 GCATATGATGAAGTTTTGTGAG-AGGAGATTGTTTGGTGGTTTAGACCGGGTTGCTAGGA 688
||||| |||| |||||||||| | |||||||| ||||||||| |||||||||||| ||
Sbjct 961 ACATATTATGAGGTTTTGTGAGCA-GAGATTGTATGGTGGTTTGGACCGGGTTGCTCGGT 1019
Query 689 CGCTTGAGGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGGTTCGGATAGTTTGCTTA 748
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 CTCTTGAAGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGGTTCGGATAGTTTGCTGA 1079
Query 749 CGTGGCATGCGTTTCAGAGGATGAGAGATTTGTATTTTGTTCAAGATGGGCCGGAGAAAC 808
||||||| ||||||||||||||||| ||||||||||| ||| | |||||| |||||||||
Sbjct 1080 CGTGGCAGGCGTTTCAGAGGATGAGGGATTTGTATTTCGTTGAGGATGGGGCGGAGAAAC 1139
Query 809 ATGCTGGGGTTTTGTATGGGCTT-GAGGTTTTTTAAGCGG-TTTA 851
| || || ||||||||||| || |||||||||| || || ||||
Sbjct 1140 ACGCCGGAGTTTTGTATGGT-TTAGAGGTTTTTTGAG-GGATTTA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5