BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484844

Length=631
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44280.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   815    0.0  
  AT5G22280.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   147    2e-34


> AT3G44280.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G22280.1); 
Has 82 Blast hits to 82 proteins in 13 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15968593-15971167 
REVERSE LENGTH=766
Length=766

 Score =  815 bits (441),  Expect = 0.0
 Identities = 529/569 (93%), Gaps = 16/569 (3%)
 Strand=Plus/Plus

Query  16   CAA-TCATCATCAGCATCAAATTAAAACCTCAGCTTTTGCATTTCTCTACTAACAC-AAA  73
            ||| |||||||||  ||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct  40   CAATTCATCATCA--ATCAAATAAAAACCTCAGCTTTTGGATTTCTCTACTAACACAAAA  97

Query  74   ACTCTCATTTCGGTGTCTCTGATTGCGAATTTGATCTCAATATTCGATTTTTGAAAGATC  133
            |||||||||||  ||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct  98   ACTCTCATTTCTCTGTTTCTGATTGCGAATTCGATCTCAAAATTCGATTTTTGAAAGATC  157

Query  134  TCTTTCAATTTCACCATTC-CTGGACCCCAAACGGAGGGAGAGTTCGATCATGAAGTTTG  192
            || |||||||||||||||| | |||  || |||||||| |||| ||||||||||||||| 
Sbjct  158  TCGTTCAATTTCACCATTCAC-GGA-ACCTAACGGAGGAAGAGGTCGATCATGAAGTTTC  215

Query  193  GTTATTCCTCTGGTCAAATTCGATTTGTGTTTTAAGCAACTGAAG-------T-AACAAT  244
            ||| |||||||||||||||||||||||||||||||  ||||||||       | ||||||
Sbjct  216  GTTCTTCCTCTGGTCAAATTCGATTTGTGTTTTAA-AAACTGAAGTAAACATTAAACAAT  274

Query  245  GTCGAAACCGATCCTGCTCGTGTGTCTACTAGTTATACTTATAGTTACCTCTCAGTTTGA  304
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  275  GTCGAAACCGGTCCTGCTCGTGTGTCTACTAGTTATACTTATAGTTACCTCTCAGTTTGA  334

Query  305  ATGGAGGCAACCACTTGTTGAGTTAGATACAGCCACCAGCTTGTCTCAGAAACAGCAGCA  364
            |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  335  ATGGAGGCAACCACTTGTTGAGTTAGATACAGCCACTAGCTCGTCTCAGAAACAGCAGCA  394

Query  365  AATTTCAGATAGGGAAGAAGCTGTCAAAGAGAAGATCATCATATCACAAGAGAGACATAT  424
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  395  AATTTCAGATAGGGAAGAAGCTGTCAAAGAGAAGATCATTATATCACAAGAGAGACATAT  454

Query  425  CCAGAGGCTAAATGAGCTTGTCAGGAGTCTTCAATTGCAGTTGCTGCAATGCAAGGGAGA  484
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  455  CCAGAGGCTAAATGAGCTAGTCAGGAGTCTTCAATTGCAGTTGCTGCAATGCAAGGGAGA  514

Query  485  GAATGTGACCCAAAATGCCACCAAAAGCTATCATCTAAACAAACAATTCATTGAGGTCGA  544
            ||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct  515  GAATGAGACCCAAAATGCCACCAAAAGCTATCATATAAATAAACAATTCATCGAGGTCGA  574

Query  545  AAGGAAACAAATCCTGGAAGGCTAAACTC  573
            |||||||||||||||||||||||||||||
Sbjct  575  AAGGAAACAAATCCTGGAAGGCTAAACTC  603


> AT5G22280.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages. | chr5:7373995-7375719 
REVERSE LENGTH=925
Length=925

 Score =  147 bits (79),  Expect = 2e-34
 Identities = 143/174 (82%), Gaps = 4/174 (2%)
 Strand=Plus/Plus

Query  397  AGATCATCATATCACAAGAGAGACATATCCAGAGGCTAAATGAGCTTGTCAGGA-GTCTT  455
            |||||||| | ||||||||||||||||||||||||||||| || ||||| | || |||||
Sbjct  537  AGATCATCTTGTCACAAGAGAGACATATCCAGAGGCTAAACGACCTTGT-ACGAAGTCTT  595

Query  456  CAATTGCAGTTGCTGCAATGCAAGGGAGAGAATGTGACCCAAAATGCCACCAAAAGCTAT  515
            ||| ||||||| | || |||||| |||||||| | ||| | ||| |||||  ||| ||  
Sbjct  596  CAAATGCAGTTACAGCGATGCAAAGGAGAGAACGAGACACGAAACGCCACTGAAACCTCC  655

Query  516  CATC-TAAACAAACAATTCATTGAGGTCGAAAGGAAACAAATCCTGGAAGGCTA  568
            |||  ||| |||||| ||||||||| |||| |||||||| ||| |||||| |||
Sbjct  656  CATAATAA-CAAACAGTTCATTGAGCTCGAGAGGAAACACATCGTGGAAGACTA  708



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30441893082


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5