BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484851
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44326.1 | Symbols: | F-box family protein | chr3:16000879-... 1066 0.0
> AT3G44326.1 | Symbols: | F-box family protein | chr3:16000879-16002118
REVERSE LENGTH=1240
Length=1240
Score = 1066 bits (577), Expect = 0.0
Identities = 711/775 (92%), Gaps = 12/775 (2%)
Strand=Plus/Plus
Query 359 CCGTTGATATGACGGAGTTAATCTCAGCCGTTGATATTTTCTACAAAGATAAAGTGATTT 418
||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 426 CCGTTGATACCTCGGAGTTAATCTCAGCCGTTGATATATTCTACAAAGATGACGTGATTT 485
Query 419 TCTCAAGGGTTCATGTGACAGAGACAGTCTCTGGGTGGTTCCTTTGTTCACCTATGCGTG 478
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 486 TCTCAAGGGTTCATGTTACAGAGACAGTCTCTGGTTGGTTCCTTTGCTCACCTATGCGTG 545
Query 479 TCGATCTTGTCGAACCGAAAGAACTAATTTCGACAAAAGTTTCAGTGGTCA---ACCAAT 535
||||||||||||||||||||||||||||| |||| | ||||| |||| | ||||||
Sbjct 546 TCGATCTTGTCGAACCGAAAGAACTAATTCCGACCAGAGTTT---TGGTTACGGACCAAT 602
Query 536 GGGAAG-ATGACACGTGGAAAAATGACTTGGAAAAGGATCTCTCCTTGAGCTGGATACTC 594
| ||| ||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 603 GT-AAGGATGACACGTGGAAAAGTGACTTGGAAGAGAATCTCTCCTTGAGCTGGATACTC 661
Query 595 ATTGACCAGACCGGTAAACGTGCGGCGGATGTATCAACCCGTAAACCCGTCTCGGTGCAA 654
||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 662 ATTGACCCGACATGTAAACGTGCGGCGGATGTATCAACCCGTAAACCTGTCTCGGTGCAC 721
Query 655 CGTCATTGGTTAACCGGAGAAGTTCACGTAAAATTCTCAACTATTTTTGTCGTGGGCAAC 714
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 722 CGTCATTGGTTAACCGGAGAAGTCCACGTAAAATTCTCCTCTATTTTTGTCGTGGGCAAC 781
Query 715 AAGAAAAGGTCAGAGCAAGTGGAGTTCACGGTGACGGTGGTTCTGGCGGCGTTTAACCGG 774
||||||||||| ||||||||||||||||| || |||||||| ||||||| ||||||||||
Sbjct 782 AAGAAAAGGTCGGAGCAAGTGGAGTTCACTGTAACGGTGGTGCTGGCGGTGTTTAACCGG 841
Query 775 AGGGAAGAGGAAACAGCGGTAATGCAGATAAGAGAGGTGAGCCTAGTAGCAGAGGACAAA 834
||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 842 AGGGAAGAGGAGACAGCAGTGATGCAGATAAGAGAGGTGAGCCTAGTAGCAGAGGACAAG 901
Query 835 GATGGGAAAAATTTAGGAGGGAATGGT-AGTTTGGTAATTTTGGCGGCGGCCATGGGGAG 893
||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||||||||
Sbjct 902 GATGGGAGGAATTTAGGAGGGAA-GGTTAGTTTGGAAATTTTGGTGGCGGCCATGGGGAT 960
Query 894 GAAGCGTCGGTTTAGGGCGGGAGGGGAAGGAGGAGGGAAAGAGAAGTACTTAGAAT-TCA 952
||| ||| ||||||||||||||||||||| || |||||||||||||||| |||||| | |
Sbjct 961 GAAACGTAGGTTTAGGGCGGGAGGGGAAGAAGAAGGGAAAGAGAAGTACATAGAATAT-A 1019
Query 953 TGGAGAGGAAGACCGCGAAGGCGGAGATGAAGTGGCGTCGAGGGAAAGAAACGGCAATGG 1012
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1020 TGGAGAGGAAGACCGCGAAGGCGGAGATGAAGTGGCGGCGAGGGAAAGAAACGGCTATGG 1079
Query 1013 AGACGGCGGCGTGTTGGATCGCCGTCCTTTTACTTGGTTTTCTTTTGTGTTTTTATCTGT 1072
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1080 AGACGGCGGCGTGCTGGATCGCCGTCCTCTTACTTGGTTTCCTTTTGTGTTTTTATCTGT 1139
Query 1073 TTATACATAAAAATATGGTAGCTATTATGAAAAAACTAATAAAATAGTTAAATAA 1127
|||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTATGCATAAAAATTTAGTAGCTATTATGAAAAAACTAATAAAATAGTTAAATAA 1194
Score = 508 bits (275), Expect = 3e-143
Identities = 338/369 (92%), Gaps = 2/369 (1%)
Strand=Plus/Plus
Query 1 ATGCTTTCGTCTTCTTCTTCGTTGACGGTGGAGCAACCATCACGTACCGGAAGTTCGGGG 60
|||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 95 ATGCTTTCGTCTTCGTCTTCGTCAACGGTGGAGCAACCATCACGTGGCGGAAGTCCGGGA 154
Query 61 ATCAACGCCGTGTCCTCCGACGTTTTACGGTCTAACATCCTCACCCGCCTCGACGGTGCT 120
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 155 ATCAACGCCGTGTCCTCCGATGTTTTACGGTCTAACATCCTAACCCGCCTCGACGGTTCC 214
Query 121 TCACTTGCCGCCCTAAGCTGCACTTGCTCCAACCTAAACTCTTTTTGCTCGGACGAGTCC 180
|| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 215 TCTCTCGCCGCCCTAAGCTGCACGTGCTCCAACCTAAACTCTTTTTGCTCCGACGAGTCC 274
Query 181 CTATGGATGCAACAATGTTCCGCCACATGGCCTTCTACCTTAGATACACGTGTCCAAAGC 240
|| |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 275 CTCTGGAGGCAACAATGTTCCGCTACATGGCCTTCTACCTCGGATACACGTGTCCAAAGC 334
Query 241 ATCATCTCAACGTTCCCCGCCGGTCACCGG-CAGTTTTTCTCTGATTCCTTTCCGTTTCT 299
||||||||||||||||||| |||||||||| | |||||| || |||||||||||||||||
Sbjct 335 ATCATCTCAACGTTCCCCGACGGTCACCGGAC-GTTTTTTTCCGATTCCTTTCCGTTTCT 393
Query 300 TGAACATGATGGTGTGATTAATCTCCCACCGTCCGTTGATATGACGGAGTTAATCTCAGC 359
||||||||||| || ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 394 TGAACATGATGTTGGGATCAATCTCCCACCGTCCGTTGATACCTCGGAGTTAATCTCAGC 453
Query 360 CGTTGATAT 368
|||||||||
Sbjct 454 CGTTGATAT 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55270800045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5