BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484858
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44370.1 | Symbols: | Membrane insertion protein, OxaA/YidC... 2137 0.0
> AT3G44370.1 | Symbols: | Membrane insertion protein, OxaA/YidC
with tetratricopeptide repeat domain | chr3:16030322-16035161
REVERSE LENGTH=1908
Length=1908
Score = 2137 bits (1157), Expect = 0.0
Identities = 1302/1373 (95%), Gaps = 5/1373 (0%)
Strand=Plus/Plus
Query 273 TCAAACTATGATTATTTAACTCAACCTGTGATTTCGTTGCTTGATTCGTACCATGACATC 332
|||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 354 TCAAACTATGATTACTTGACTCAACCTGTGATCTCGTTGCTTGATTCATACCATGACATC 413
Query 333 ACTGGATTGCCTTGGTGGGTGGTTATTGCTACGTCTACTGTGGCTTTTAGAACGGCTTTG 392
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 414 ACTGGATTGCCTTGGTGGGTGGTTATTGCTACGTCTACTGTGGCATTTAGAACGGCTTTG 473
Query 393 CTTCCTATACTGATTCTGCAACGCAAGCAAACTAGAAGGATCTCACAGTTCTTACCTAAG 452
||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 474 CTTCCTATACTGATTTTGCAACGGAAGCAAACTAAAAGGATCTCACAGTTCTTACCTAAG 533
Query 453 TTACCGCCTTTCTGGCCTCCACAAGGTTCAGGAAGGAGTGTTATTGATCAATTGAAGC-T 511
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 534 CTACCGCATTTCTGGCCTCCACAAGGTTCAGGAAGGAGTGTTCTTGATCAATTGAAGCTT 593
Query 512 TTTCTGGAAGGAAAGAAGAGATAGCGGGTGCCCTTCGTTTTTGTGGTTTCCTGCTTATTT 571
|||| |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct 594 TTTC-GGAAGGAAAGAAAAGATATCGGGTGCCCTTCGTTTTTGTGGGTTCCTGCTTATTT 652
Query 572 CTCCATCCAGATATCATGTTTTTTCTTGTGGATAACTAGCATCAGAAGAATGTCACTTGA 631
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CTCCATCCAGATTTCATGTTTTTTCTTGTGGATAACTAGCATCAGAAGAATGTCACTTGA 712
Query 632 TCATCATCCTGGATTTGATTCGGGTGGAGCTTTATGGTTTCAGAATTTGACCGAAGTTCC 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 713 TCATCATCCTGGATTTGATTCGGGTGGAGCTTTATGGTTTCAGAATTTGACCGAAATTCC 772
Query 692 CAATGGTCTTTATGGTCCTCTTTTCCCCTTTTTAATAGCTGGTTTGCATTACACAAACAC 751
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CAATGGTCTTTATGGTCCACTTTTCCCCTTTTTAATAGCTGGTTTGCATTACACAAACAC 832
Query 752 ACAGATAACTTTTACAGCATCCTCAGTTCACAAAGTTGATAAATTCGCGGAACTGGCAAA 811
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 833 ACAGATAACTTTTACAGCATCCTCAGTTCACAAAGTTGATAAATTCACGGAATTGGCAAA 892
Query 812 AACTTTCAAGATGTTTTTGAATTTTTTGACATTTGCTCTTTATGGCCTTTCATTCCAAAT 871
| ||| ||||| ||| ||||| ||||||||| |||||| ||| |||||||||||||||
Sbjct 893 AGCTTACAAGACATTTCTGAATCTTTTGACATGTGCTCTGTATTTCCTTTCATTCCAAAT 952
Query 872 GCCTCAGGGAAGTCTACTCTACTGGGCTACCAATTTGTCATTCAGCATAGCTCAGCAATC 931
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 953 GCCTCAGGGAAGTCTACTCTACTGGGCTACCAATTTGTCATTCAGCATTGCTCAGCAATC 1012
Query 932 AATCCTTAACCACCCCGTTGTAAGTGCAAAGTTGGGCCTACAAGCAAATGACTCTGTACA 991
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AATCCTTAACCATCCCGTTGTAAGTGCAAAGTTGGGCCTACAAGCAAATGACTCTGTACA 1072
Query 992 GAAAGAGGCTGGCAATCCTATATTAACAAACATTAATGAAGCAAAACTTACTGATTCATC 1051
|||||| ||||||||||||||||||||||| || ||||||| ||||| |||||| ||||
Sbjct 1073 GAAAGAAGCTGGCAATCCTATATTAACAAATATAAATGAAGGGAAACTCACTGATCCATC 1132
Query 1052 CTCAAAAGGACGCTTGATCTCAGGGCATAACTTAACCCCTAAAGAGTTGGTTGCTCTTTC 1111
||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1133 CTCGAAAGGACGGTTGATCTCAGTGCATAACTTAACCCCTAAGGAGTTGGTTGCTCTTTC 1192
Query 1112 TGCCAAATACTTATCCGGAGGGAACAAGGATAAATCAATTCCGCTATTAAGATTGGCATT 1171
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1193 TGCTAAATACTTATCCGGAGGGCACAAGGATAAATCAATTCCGCTATTAAGATTGGCATT 1252
Query 1172 AGAAAAAGATCCTGAATACCTTCAAGCTATGGTTATTCTTGGCCAGGCTTTATATCAGAA 1231
|||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1253 AGAAAAGGATCCTGAATACCTTCAAGCTATGATTATTCTTGGACAGGCTTTATATCAGAA 1312
Query 1232 AGACCAGTTTGCTGAAGCTGCAAAATACTTAGAGCTGGCTGCTTCAAAGCTTCTTGATAC 1291
||||||||| || ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1313 AGACCAGTTCGCGGAAGCTGCAAAATGCTTAGAGCAGGCTGCTTCAAAGCTTCTTGATAC 1372
Query 1292 CAGTCCAACAGAAGTTGAAGAAGTCGATCTTTTAATTGTTGCATCCCAATGGGCAGGTGT 1351
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CAGTCCAACCGAAGTTGAAGAAGTCGATCTTTTAATTGTTGCATCCCAATGGGCAGGTGT 1432
Query 1352 CTCCAATATTCGCCAGGGAAAGACATCGGAAGGAATCACTCACCTTGAAAGAGTAGCAAA 1411
||||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1433 CTCCAATATACGTCAGGGGAAGACATCAGAAGGAATCACACACCTTGAAAGAGTAGCAAA 1492
Query 1412 CATGAAAGAGCCTGACGATCCCAAGAGCAAAGCTCATTACTTGGACGCATTGGTACTCTA 1471
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1493 CATGAAAGAGCCCGACGATCCTAAGAGCAAAGCTCATTACTTGGATGCATTGGTACTCTA 1552
Query 1472 CTCAAGTGCTATATTCAACGAAGGAAGGAGAGAGGAAGCAGCAAAGTATTTGAGAAGAGT 1531
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CTCAAGTGCGATATTCAACGAAGGAAGGAGAGAGGAAGCAGCAAAGTATTTGAGAAGAGT 1612
Query 1532 GGTGGCTTATGATCCTTCCTTCAGTGAATTGTTGAAACAATGCGAAGAAGATAATAATAC 1591
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1613 GGTGGCTTATGATCCTTCCTTCAGTGAATTGTTGAAACAATGCGAAGAAGATGATA---C 1669
Query 1592 CATTCCCACTTCTTCTTCATCTAATTCTGTCAACAAAACTTCATAACtttttt 1644
|||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1670 CATTCCCACTTCTTCTTCATCTAATTCTACCAGCAAAACTTCATAAGTTTTTT 1722
Score = 298 bits (161), Expect = 1e-79
Identities = 212/237 (89%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 1 TTTCCTCACCGGAAATGGCATTTCGTAGGGTTTTACTCTCTAACCTCCGCCGATCTCACC 60
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TTTCTTCACCGGAAATGGCATTTCGTAGGGTTTTACTCTCTCACCTCCGCCGATCTCACC 60
Query 61 ACACTTGCTCCTCTCTCTCCCCTCACCACATCTCCGCCACGACACATCCGTCAATCACGC 120
||||||||||||||||||| |||||||| |||||||||| || || || |||||| |||
Sbjct 61 ACACTTGCTCCTCTCTCTCTCCTCACCATGTCTCCGCCACAACCCAACCTTCAATCGCGC 120
Query 121 TCGGTCTTTTCCAATCCCGCTTCTTTTCCACTCCACCTGACCTCGACTCTGAGCTAACTC 180
||| ||||||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 121 TCGCTCTTTTCCAATCCCGCTTCTTTTCCACTCCATCTGACCTAGATTCTGAGCTAACTC 180
Query 181 GACTCAGAGACGATTCAGTCACTGGATTTGGAACCAATGGTCACGAACT-AGAGTTC 236
|| |||||||||||||| || |||| |||||| ||||| ||| | || |||||||
Sbjct 181 GATTCAGAGACGATTCAATCGCTGGCGTTGGAAGCAATGATCATGG-CTTAGAGTTC 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5