BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484859
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44380.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1027 0.0
> AT3G44380.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:16036183-16036880
REVERSE LENGTH=698
Length=698
Score = 1027 bits (556), Expect = 0.0
Identities = 613/641 (96%), Gaps = 1/641 (0%)
Strand=Plus/Plus
Query 1 AAAATCGAAGTTCTCCTCCACGAATCACAAGGACATAGACTGTAATTTTGCGATGGGGTC 60
||||||||| |||||||| | |||| ||||| ||||||||||||||| | |||||||||
Sbjct 15 AAAATCGAACTTCTCCTCTTCAAATCGCAAGGGCATAGACTGTAATTTCGAGATGGGGTC 74
Query 61 AAGGGACCAAAAGGTAAAATGGAGCTGGAGCTCAGCCTTAATCGGAGCAGCATCAGCAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AAGGGACCAAAAGGTAAAATGGAGCTGGAGCTCAGCCTTAATCGGAGCAGCATCAGCAAC 134
Query 121 AGCAGCAGCTTCTCTCCTAAGTGCCAAGCCAAAAGATCCAACATTCCACCTTATCTCCAT 180
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 135 AGCAGCAGCTTCACTCCTAAGCGCCAAGCCAAAAGATCCAACATTCCACCTTATCTCCAT 194
Query 181 AGACCTAACCTCACTGAAACTAAACCTCCCTGTCCTCGACGCAGAGCTAATGCTTACCGT 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 AGACCTTACCTCACTGAAACTAAACCTCCCTGTCCTCGACGCAGAGCTAATGCTTACCGT 254
Query 241 ACACGTCACTAACCCTAACGTCGCACCCATCCGTTACTCCTCCACCACCATGACAATCCT 300
||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||
Sbjct 255 ACACGTCACTAACCCTAACATCGCAGCCATCCATTACTCCTCCACCAAGATGACAATCCT 314
Query 301 CTACGATGGCACGGTTCTTGGCTCGGCTGAGGTCAAAGCTGGCTCGCAACCGGCGAGATC 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 315 CTACGATGGCACGGTTCTTGGCTCAGCTGAGGTCAAAGCTGGCTCGCAACCGGCGAGATC 374
Query 361 TTGCCAGCTTCTCCGGTTACCGGCGCGTCTCGATGGTATGGAGCTTGCGCAGCACGCGCG 420
||| |||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 375 TTGTCAGCTTCTCCGGCTACCGGCGCGTCTGGACGGTATGGAGCTTGCGCAACACGCGCG 434
Query 421 GCAGTTCTTTTCTGACGTGGCGAAGAGAGAGATGAAACTTGAGGCTAAGCTTACTATTGA 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 435 GCAGTTCTTTTCTGACGTGGCGAATAGAGAGATGAAACTTGAGGCTAAGCTTACTATTGA 494
Query 481 AGGAGCGGCTAAGGTTATGTGGTGGGATCATAGTTTTAGGGTTCACGTGGATAGTTTTGT 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 AGGAGCGGCTAAGGTTTTGTGGTGGGATCATAGTTTTAGGGTTCACGTGGATAGTTTTGT 554
Query 541 TACCGTTGATCCTGTTTTTCTTGATGTTATTGGTCAAGAGAATAAGTCTCAGATGGATTT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CACCGTTGATCCTGTTTTTCTTGATGTTATTGGTCAAGAGAATAAGTCTCAGATGGATTT 614
Query 601 GTTTCTTACTTAAAAGATAAATTATTATTGTACCATTTTTA 641
||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 615 GTTTCTTACTTAAAAAATAA-TTATTGTTGTACCATTTTTA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5