BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484861

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44450.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   872    0.0  


> AT3G44450.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G52740.1); 
Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16074096-16074678 
REVERSE LENGTH=583
Length=583

 Score =  872 bits (472),  Expect = 0.0
 Identities = 550/586 (94%), Gaps = 12/586 (2%)
 Strand=Plus/Plus

Query  1    TATTTCTCTCTAAATCTCAACATTTTTATATATACAACACACACGTTGAAACCAATAAAA  60
            |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct  1    TATTTCTCTCTAAATCTCAACATTTTTATATATACAACACACACGTCGAAGCCAATAAAA  60

Query  61   ATCTCTATTGC--aa--aaaaaTACAGAAAAGAGTTCAAAATGAAGAACACCCATTTGCC  116
            ||||||| | |  ||  ||||||| ||||||||||||||||||||||||||| |||||||
Sbjct  61   ATCTCTACTACAAAAGTAAAAATAAAGAAAAGAGTTCAAAATGAAGAACACCAATTTGCC  120

Query  117  TGAAGAATCCAAGGAACCAATCTCTCCGGGATCTTCTCACCGGAAACAAAACAAGACAGC  176
            ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct  121  TGAAGAAACCAAGGAACCAATCTCTCCAGGATCTTCTCACCGGAAACAAAACAAGACAGG  180

Query  177  CACGAAA-ACATGTTTGCCGGAAACAACGGTGTTGTCGGGACGTGAGAGGCTAAAGAGAC  235
             || ||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct  181  TAC-AAAGACATGTTTCCCGGAAACAACGGTGTTGTCAGGACGTGATAGGCTAAAGAGAC  239

Query  236  ATAGAGAAGAGGTTGCCGGAAAAGTTCCTATACCGGAGAGTTGGGGAAAAGAAGGATTAC  295
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  240  ATAGAGAAGAGGTTGCCGGAAAAGTTCCTATACCGGATAGTTGGGGAAAAGAAGGATTGC  299

Query  296  TTATGGGATGGATGGATTTTTCGACCTTCGACGCTGCTTTTACTTCGAGCCAGATTGTTT  355
            ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct  300  TTATGGGATGGATGGATTTTTCGACCTTCGACGCTGCTTTTACGTCTAGCCAGATTGTCT  359

Query  356  CTGCTCGAGCTGCGCTAATGGCTGACGCCGGAGACGATGCCGGCA-CTAGAGGAAGTAGG  414
            |||||||||||||| ||||||||||| | |||||||||||||| | ||||||||||||||
Sbjct  360  CTGCTCGAGCTGCGTTAATGGCTGACTCAGGAGACGATGCCGG-AGCTAGAGGAAGTAGG  418

Query  415  CCTCAACGCCTTCGAGTTGAGAGTTCTTGTTGATTTCATTGTCTTAGAGAAATGTTTATG  474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  419  CCTCAACGCCTTCGAGTTGAGAGTTCTTGTTGATTTCATTGTCTTAGAGAAATGTTTATG  478

Query  475  CAAATAATACCTCTCGTCATGATTTTGAATGTT-T-ATTAGATACCTTATCTTCACATTG  532
             ||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct  479  -AAATAATAC-TCTCATCATGATTTTGAATGTTATTATTAGATACCTTATCTTCACATTG  536

Query  533  ATTTTGGAATTTTGAACTATTGATACAATTATTCAAAGTTTCATAT  578
            |||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct  537  ATTTTGAAATTTTGAACCATTGATACAATTATTCAAAGTTTCATAT  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27779483291


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5