BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484862
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44460.1 | Symbols: DPBF2, AtbZIP67 | Basic-leucine zipper (... 1796 0.0
> AT3G44460.1 | Symbols: DPBF2, AtbZIP67 | Basic-leucine zipper
(bZIP) transcription factor family protein | chr3:16079976-16081906
REVERSE LENGTH=1232
Length=1232
Score = 1796 bits (972), Expect = 0.0
Identities = 1159/1244 (93%), Gaps = 33/1244 (3%)
Strand=Plus/Plus
Query 1 TTTTAAAAGTATCAGTTTCCACTGACACAATCCTTAACTATTTTCCTTTGTTCTTCTTCA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTTAAAAGTATCAGTTTACACTGACACAATCCTTAACTATTTTCCTTTGTTCTTCTTCA 61
Query 61 TCTTTATTACACAAtttttttCAAGGTAACAAATTACCAAACGATGTCGGTTTTTGAATC 120
|||||||||||| |||||||||||||| | |||||||||||||||||||| |||||
Sbjct 62 TCTTTATTACAC-ATTTTTTTCAAGGT--C----TACCAAACGATGTCGGTTTTCGAATC 114
Query 121 CGAGACTTCGACCTTCCACGTCTACAACAACCACGAAATCCAAACACAACCGCAGATGCA 180
|||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 115 GGAGACTTCGAACTTCCACGTCTACAACAACCACGAAATCCAAACGCAACCGCAAATGCA 174
Query 181 AACGTTTCTGTCGGAGGAGGAACCGGTAGGGAGACAAAACTCGATTTTGTCACTAACTCT 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 175 AACGTTTCTGTCGGAGGAGGAACCGGTAGGGAGACAGAACTCGATTTTGTCACTAACTCT 234
Query 241 TGACGAAATTCAGATGAAAAGTGGTAAGAGCTTTGGAGCGATGAACATGGACGAGTTCCT 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 235 TGACGAAATTCAGATGAAAAGCGGTAAGAGCTTTGGAGCGATGAACATGGACGAGTTCCT 294
Query 301 AGCGAACTTATGGACAACCGTTGAAGAAAACGACAACAACGGAA-GAGGTGGGCCCCACC 359
||||||||| |||||||||||||||||||||| ||||| ||| |||||||| | |||
Sbjct 295 AGCGAACTTGTGGACAACCGTTGAAGAAAACG---ACAAC-GAAGGAGGTGGGGCTCACA 350
Query 360 ACGACCGAGAGAAACCGGCGGTGCTTCCACGTCAAGGGTCGTTGTCCCTCCCCGTGCCTT 419
||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 351 ACGACGGAGAGAAGCCGGCGGTGCTGCCACGTCAAGGGTCGTTGTCCCTCCCTGTGCCTT 410
Query 420 TATGCAAGAAAACCGTGGACGAGGTTTGGCTAGAGATACAAAACGGCGTACAACAACATC 479
||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 411 TATGCAAGAAAACGGTCGACGAGGTTTGGCTCGAGATACAAAACGGTGTACAACAACATC 470
Query 480 CACCGTCGTCAAATTCCGGTCAAAACTCCGACGAAGATATTCGCCGGCAACAAACTCTTG 539
|||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 471 CACCGTCGTCGAATTCCGGTCAAAACTCCGCCGAAAATATTCGCCGGCAACAAACCCTTG 530
Query 540 GTGAGATCACGCTCGAGGATTTTCTTGTTAAAGCTGGTGTTGTACAAGAACCATTGAAGA 599
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 531 GTGAGATCACTCTCGAGGATTTTCTTGTTAAGGCTGGTGTTGTACAAGAACCGTTGAAGA 590
Query 600 CAACGATGAGGATGTCGAGTTCTGATTTTGGTTATAACCCGGAGTTTGGAGTTGGTTTAC 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 591 CAACGATGAGGATGTCGAGTTCTGATTTTGGTTATAACCCCGAGTTTGGAGTTGGTTTAC 650
Query 660 ATTGTCAGAACCAAAACAATTATGGTGATAACCGGTCGGTTTATAGTGATAACCGGCCGT 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 651 ATTGTCAGAACCAAAACAATTATGGTGATAACCGGTCGGTTTATAGTGAAAACCGACCGT 710
Query 720 TTTACTCGGTTTTGGGGGAATCTTCAAGCTGTATGACCGGGAATGGGAGAAGTAATCAGT 779
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 711 TTTACTCGGTTTTGGGAGAATCTTCAAGCTGTATGACCGGGAATGGGAGGAGTAATCAGT 770
Query 780 ATTTAACCGGTTTAGATGCTTTTCGGATCAAGAAACGGATAATTGATGGTCCACCTGAAA 839
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 ATCTGACCGGTTTAGATGCTTTTCGGATCAAGAAACGGATAATTGATGGTCCACCTGAAA 830
Query 840 TTTTGATGGAGCGGAGACAACGGCGGATGATTAAAAACCGTGAATCTGCGGCTCGGTCTC 899
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 831 TTTTGATGGAGCGGAGACAACGGCGAATGATTAAAAACCGCGAATCTGCGGCTCGGTCTC 890
Query 900 GAGCCCGGAGACAGGCTTATACTGTTGAATTGGAGTTGGAACTGAACAACCTCACGGAAG 959
||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 891 GAGCCCGGAGACAAGCTTATACTGTGGAACTGGAGTTGGAATTGAACAACCTCACGGAAG 950
Query 960 AAAACACAAAGCTGAAGGAAATTGTGGAGGAAAATgaaaagaaaagaaggcaagagataa 1019
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 951 AAAACACGAAGCTGAAGGAAATTGTGGAGGAAAATGAGAAGAAAAGAAGACAAGAGATAA 1010
Query 1020 taaatagaagcaaacaagtgactaaagagaagaaaggagaCAAATTGAGAAAGATTCGGA 1079
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1011 TAAGTAGAAGCAAACAAGTGACTAAAGAGAAGAGCGGAGACAAATTGAGAAAGATTCGGA 1070
Query 1080 GGATGGCTAGTGCAGGGTGGTAAATAGATATGAGAGTTTGTGTAATTTGCATATAATAT- 1138
||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1071 GGATGGCCAGTGCCGGGTGGTAAATAGATATGAGAGTTTGTGTAATTTACATATGATATT 1130
Query 1139 --ATT-AT-------A-C-ATA----TAAATATTTGTATCTAttttttttATTTTGAGAC 1182
||| || | | ||| ||||||||||||||||| || | ||||||||||
Sbjct 1131 TTATTGATCGTTTCTATCTATACACATAAATATTTGTATCTATATTAT--ATTTTGAGAC 1188
Query 1183 AAA-AGTGGAATTTGTGTATATAGGATCATTTCTTTTTATATAT 1225
||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1189 AAACA-TGGAATTTGTGTATATAGGATCATTTCTTTTTATATAT 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5