BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484863
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44510.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1550 0.0
> AT3G44510.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:16108100-16111188 REVERSE LENGTH=1178
Length=1178
Score = 1550 bits (839), Expect = 0.0
Identities = 1043/1137 (92%), Gaps = 32/1137 (3%)
Strand=Plus/Plus
Query 21 ATCCTCAAGGAAGAATCAAAC-TAAGCGATGGTAGATACTTGGCCTACAAGGAAAGAGGT 79
||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 60 ATCTTCAAGGAAGAATCAAACTTCA-CGATGGTAGATACTTGGCCTACAAGGAAAGAGGT 118
Query 80 GTCCCCAAGGATGATGCAAAGTTCATC-ATCGTTCTTGTTCATGGATTTGGTAGCTCCAA 138
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 119 GTCCCCAAGGATGATGCAAAGTTCA-CGATCGTTCTTGTTCATGGATTTGGTAGCTCCAA 177
Query 139 AGATATGAACTTCAATGTCTCACAATTATAATCTCAGGAGTTTGTGAATGAAATTGGGAT 198
|||||||||||||||||||||| | | ||| |||||||||||||||| ||
Sbjct 178 GGATATGAACTTCAATGTCTCAC-------A----A-GAGCTTGTGAATGAAATTGGTAT 225
Query 199 ATACTTTGTGCTATACGATCGAGCTGGTTACGGAGAGAGTGACCCGAATCCGAAACGTTC 258
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 226 ATACTTTGTGCTATATGATCGAGCTGGTTACGGAGAGAGCGACCCGAATCCTAAACGTTC 285
Query 259 GTTGAAGAGTGAAGCAC-ACGATGTTCAAGAACTGGCGGATCGG-TTAGAGATCGGATCC 316
||||||||||||||| | |||||||||| |||||||||||| || |||||||||||||||
Sbjct 286 GTTGAAGAGTGAAGC-CTACGATGTTCAGGAACTGGCGGAT-GGTTTAGAGATCGGATCC 343
Query 317 AGGTTTTATCTCATTGGTATCTCAATGGGTTCATACACTATTTGGAGTTGCCTTAAACAT 376
||||||||| | ||||| || ||||||||||| |||||| ||||||| ||||||||||||
Sbjct 344 AGGTTTTATTTGATTGGAATTTCAATGGGTTCCTACACTGTTTGGAGCTGCCTTAAACAT 403
Query 377 ATTCCTCAAAGGTTAGCAGGAGTGGCAATGGTGGCTCCGATGGTGAATTACCGGTGGCCA 436
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 404 ATTCCTCAAAGGTTAGCAGGAGTGGCAATGGTGGCTCCGGTGGTGAATTTCCGGTGGCCG 463
Query 437 TCGATTCCAAAGAGTCTGATGCAAAAAGACTACAGAAGAGAAGTGGTGAAATGGTCCGTT 496
|| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 464 TCTATTCCAAAGAGTCTGATGCCAAAAGACTACAGAAGAGAAGTGGCGAAATGGTCTGTT 523
Query 497 TGGGTCGCTAACTATTTTCCGGGACTTCTG-AAGTGGTTGGTGACTCAAAACTTATTCTC 555
||| | ||||||||||||||||||||| || || |||||||||||||| ||| | |||||
Sbjct 524 TGGATAGCTAACTATTTTCCGGGACTTTTGCAA-TGGTTGGTGACTCAGAACATGTTCTC 582
Query 556 TACAACTAATTCGATGCTAGAGAAAAACCCTGTTTACTTCAACGACCAAGACATCGAAGT 615
||||||| | | |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 583 TACAACT--TCC-ATGCTAGAGAAAAACCCTGTCTACTTCAACGACCAAGACATTGAAGT 639
Query 616 CCTCAAGCACAACACCAAAGGCTTCCCAATGCTCACTAAGGAGAAGTTACGAGAACGCGG 675
||| ||||||| || || |||||||||||||||||||||||||||||||| || |||||
Sbjct 640 CCTTAAGCACATCA--AA-GGCTTCCCAATGCTCACTAAGGAGAAGTTACGGGAGCGCGG 696
Query 676 CATTTTCGAGACACTGAGAAGCGACTTTTTGGTGGCATTCGGCGACTGGGACTTCGATCC 735
| | |||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 697 CGTCTTCGGGACGCTGAGAAGCGATTTTTTGGTAGCATTCGGCGACTGGGACTTCGATCC 756
Query 736 GGCCGACCTACCGGACCCGTCTCTGTCTCGACCCGAAAAGGGCTCTTTTTCTGTTCACAT 795
||| |||||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 757 GGCAGACCTACCTGACCCGTCTCTGTCTGGACCGGAAAAGGGCTCTTCTTCTGTTCACAT 816
Query 796 ATGGCAAGGCTACGAAGACAAAGTGATGCCATTTCAGCTGCAAAGATGTTTGTGCCGCAA 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 ATGGCAAGGCTACGAAGACAAAGTGATGCCATTTCAGCTGCAAAGATGTTTGTGCCGCAA 876
Query 856 GCTACCGTGGATTAGGTACCATGAGGTCCCTAAAGGAGGACACCTGATCGTGTACTACGA 915
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 877 GCTACCATGGATTAGGTACCATGAGGTCCCTAAAGGAGGCCACCTGATCGTGCACTACGA 936
Query 916 CGGTGTATGCGATGCGATTTTAAAATCACTTCTTTTAGGAGAACATCTCCCAATGTACAA 975
||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 937 CGGCATATGTGATGCGATTTTGAAATCACTTCTTTTAGGAGAAGATCTCCCAATGTACAA 996
Query 976 ACCAAAAGATGTGATCATTGAGCCAGCTTAGAGACTAAGTCACTATTCTTAAATTTTTTC 1035
|||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 997 ACCAAAAGCTGTGATCACTGAGCCAGCTTAGAGACTAAGTTACTATTCTTAA-TTTATTC 1055
Query 1036 GTTTTCTTGCTTGATTCTTTGATTTTGTTTGACAAAAGTCGAATTCTCTTATTTGTAAAA 1095
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1056 GGTTTCTTGCTTGATTCTTTGATTTTGTTTGACAAAAATCGAATTCTCTTATTTGTAAAA 1115
Query 1096 TATATAT--GTACTTATGAATTTTTCATATCTATGACATATTTATTTTATCCATTAC 1150
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1116 TATATATATGTACTTATGAATTTTTCATATCT-TGACATATTTATTTTATCCACTAC 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56425412580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5