BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484867
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44550.1 | Symbols: FAR5 | fatty acid reductase 5 | chr3:161... 2383 0.0
AT3G44560.1 | Symbols: FAR8 | fatty acid reductase 8 | chr3:161... 1685 0.0
> AT3G44550.1 | Symbols: FAR5 | fatty acid reductase 5 | chr3:16138017-16141546
FORWARD LENGTH=1671
Length=1671
Score = 2383 bits (1290), Expect = 0.0
Identities = 1479/1572 (94%), Gaps = 5/1572 (0%)
Strand=Plus/Plus
Query 1 GTCAAGACAATGGAACTCAATTGTGTTCAATTTCTTCAAAACAAGACGATTCTTGTCACC 60
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 35 GTCCAGACAATGGAACTCAATTGTGTTCAATTTCTTCGAAACAAGACGATTCTTGTCACC 94
Query 61 GGCGCTACTGGTTTCCTTGCCAAGGTTTTTGTGGAGAAAATTCTGAGAGTACAACCAAAT 120
|| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 95 GGAGCTACCGGTTTCCTTGCGAAGGTTTTTGTGGAGAAAATTCTGAGAGTGCAACCAAAT 154
Query 121 GTGAAGAAGCTGTACCTTTTGGTGAGAGCATCTGACAATGAAGCTGCGACTAAACGGTTA 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 155 GTGAAGAAGCTGTACCTTTTGGTGAGAGCATCTGACAATGAAGCTGCCACTAAACGCTTA 214
Query 181 CACATGGAGGTATTTGAGAAAGATCTTTTTAAGGTGTTGAGAGAGAATCTTGGCGATGAG 240
| || ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 215 CGCACAGAGGTATTTGAGAAAGAACTTTTTAAGGTATTGAGACAGAATCTTGGCGATGAG 274
Query 241 AAATTAAATACATTGTTGTACGAAAAAGTTGTTTCGGTCCCAGGTGATATAGCGACTGAT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 275 AAATTAAATACATTGTTGTACGAAAAAGTTGTTTCGGTCCCGGGTGATATAGCGACTGAT 334
Query 301 CAGTTAGGCATTAATGACTCTGATCTTAAAGAACGTATGCGAAAAGAAATCGATATTGTT 360
|| |||||||| ||||||||| |||||| ||||||||||| ||||||||| |||||||||
Sbjct 335 CAATTAGGCATAAATGACTCTCATCTTAGAGAACGTATGCAAAAAGAAATAGATATTGTT 394
Query 361 GTCAATGTTGCAGCTACAACAAACTTTGACGAAAGATATGATGTTGGGCTTGGGATCAAC 420
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GTCAATGTTGCAGCCACAACAAACTTTGACGAAAGATATGATGTTGGGCTTGGGATCAAT 454
Query 421 ACATTTGGAGCTCTCAACGTCCTTAACTTTGCCAAAAAATGTGTTAAAGTTCAACTGGTT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 455 ACATTTGGAGCTCTCAACGTCCTTAACTTTGCCAAAAAATGTGTTAAAGTTCAATTGCTT 514
Query 481 CTCCATGTCTCAACTGCTTATGTTTGCGGAGAAAAGCCAGGTCTCATACCTGAAAAACCA 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 515 CTCCATGTCTCAACTGCTTATGTTTGTGGAGAAAAGCCAGGTCTCATACCTGAAAAACCA 574
Query 541 TTCATCATGGAAGATATTCGTAACGATAATGGTCTTCAATTGGATATAAATCTTGAAAGG 600
|||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 575 TTCATCATGGAAGAGATTCGTAACGAGAATGGTCTTCAATTGGATATTAACCTTGAAAGG 634
Query 601 GAGCTTATGAAGCAAAGACTGAAAGAACTTAATGAACAAGATTGTTCCGAAGAAGACATT 660
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 635 GAGCTTATGAAGCAAAGATTGAAAGAACTCAATGAACAAGATTGTTCCGAAGAAGACATT 694
Query 661 ACTCTCTCCATGAAAGAACTCGGAATGGAAAGGGCAAAGCGTCATGGATGGCCAAACACA 720
||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 695 ACTCTTTCCATGAAAGAACTCGGAATGGAAAGGGCCAAGCTTCATGGATGGCCTAACACA 754
Query 721 TATGTTTTCACCAAATCAATGGGAGAAATGCTTCTTGGTAACCACAAAGAAAATCTTCCC 780
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 755 TATGTTTTCACCAAATCAATGGGAGAAATGCTTCTTGGTAAGCATAAAGAAAATCTCCCC 814
Query 781 CTCGTTATCATCCGTCCCACGATGATCACTAGCACTCTTTCGGAACCTTTTCCTGGTTGG 840
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 815 CTCGTCATCATCCGTCCCACGATGATCACTAGTACTCTTTCGGAACCTTTTCCTGGTTGG 874
Query 841 ATCGAAGGCTTAAAAACTGTCGACAGCGTGATTATTGCATACGGAAAGGGAGTGCTCAAG 900
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 875 ATCGAAGGCTTGAGAACTGTCGACAGCGTGATTATTGCATATGGAAAGGGAGTGCTCAAG 934
Query 901 TGTTTTCTTGTCGATGTAAACTCGGTCTGCGATATGATACCAGTGGATATGGTAGCAAAC 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 935 TGTTTTCTTGTCGATGTTAACTCGGTCTGCGATATGATACCAGTGGATATGGTGGCAAAC 994
Query 961 GCAATGATCACGGCTGCAGCCAAACACGCTGGAGGTTCAGGGGTTCACATGGTGTATCAT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 995 GCAATGATCACGGCTGCAGCCAAACACGCTGGAGGTTCAGGGGTTCACATGGTGTACCAT 1054
Query 1021 GTCGGCTCCTCTCATCAGAACCCAGTGACATTTGGAGAGATTCATGAGATTGCGGCTCGT 1080
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1055 GTCGGCTCATCTCACCAGAACCCAGTCACATTTGGAGAGATTCATGAGATTGCGGTTCGT 1114
Query 1081 TACTTCATAAAAAACCCTTTGCGCAGTCGCAATGGCTCGCTCATAACCGTCTCGAAACTG 1140
||||| | |||||||||||||| |||||||||||||| |||||||||||||| ||| ||
Sbjct 1115 TACTTTACGAAAAACCCTTTGCGAAGTCGCAATGGCTCACTCATAACCGTCTCAAAAGTG 1174
Query 1141 AGGTTCATATCAACCATGGCTTTGTTCAGTCTCTACATGACCTTACGTTACAAACTACCT 1200
||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1175 AGGTTCATACCAACCATGGCTTTGTTCAGCCTCTACATGACCCTACGTTACAAACTACCT 1234
Query 1201 CTCCAGTTGTTAAAA-TTGATTGATATAATATATCCTTGGAGAAACGGAGACAAATATGG 1259
|||||||| |||||| | | |||| |||||||||||||||||||||||||| ||||||||
Sbjct 1235 CTCCAGTTATTAAAACTAG-TTGACATAATATATCCTTGGAGAAACGGAGATAAATATGG 1293
Query 1260 AGACAAGAACCGCAAAATTGAGGTGGTGATGAGATTGGTAGAGCTTTATGAGCCGTATGT 1319
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1294 AGACAAGAACCGCAAAATCGAGTTGGTGATGAGATTGGTAGAGCTTTATGAGCCTTATGT 1353
Query 1320 ACTTTTCAAGGGAATATTCGACGATAGAAATACAAAGAGTTTATGCGCAAACCAGAAGGA 1379
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 ACTCTTCAAGGGAATATTCGACGATAGAAATACAAAGAGTTTATGCGCAAACCAGAAGGA 1413
Query 1380 AGAGGAGAGCAAAAATACAGAAAAAATGATGTTTGATTTCGACCCAAAAGGCATTAATTG 1439
|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1414 AGAGGAGATCAAAAATACAGAAAAATTGATGTTTGATTTCGACCCAAAAGGAATTAATTG 1473
Query 1440 GGGGGATTATCTCACAAATATACATTTTTCTGGTCTCATCACCCACGTACTTAAAAAGTA 1499
||| |||||||||||||||||||| ||||||| ||| |||| ||||| ||||| ||||
Sbjct 1474 GGGAGATTATCTCACAAATATACACATTTCTGGACTCGTCACACACGTGCTTAAGAAGTG 1533
Query 1500 AAATTTTATTAAATTCCGCATGTATCA-CTAATAAAACAGCTCATGATAGAAAAGTATTA 1558
|||||||||| | ||| ||||||||| | |||||||||| ||||||| ||||| ||||
Sbjct 1534 AAATTTTATTTATTTCTGCATGTATCTGC-AATAAAACAGATCATGATGGAAAA-TATTG 1591
Query 1559 TTTGTTTGTACG 1570
||||||||||||
Sbjct 1592 TTTGTTTGTACG 1603
> AT3G44560.1 | Symbols: FAR8 | fatty acid reductase 8 | chr3:16151136-16154397
FORWARD LENGTH=1532
Length=1532
Score = 1685 bits (912), Expect = 0.0
Identities = 1312/1507 (87%), Gaps = 19/1507 (1%)
Strand=Plus/Plus
Query 3 CAAGACAATGGAACTCAATTGTGTTCAATTTCTTCAAAACAAGACGATTCTTGTCACCGG 62
||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 36 CAA-ACAATGGAATTCAGTTGTGTTCATTTTCTTCAAAACAAGACGATTCTTGTCACAGG 94
Query 63 CGCTACTGGTTTCCTTGCCAAGGTTTTTGTGGAGAAAAT-TCTGAGAGTACAACCAAATG 121
||| || |||||||||||||| ||||||||||||||||| | ||||||| ||||||||||
Sbjct 95 CGCAACCGGTTTCCTTGCCAAAGTTTTTGTGGAGAAAATAT-TGAGAGTGCAACCAAATG 153
Query 122 TGAAGAAGCTGTACCTTTTGGTGAGAGCATCTGACAATGAAGCTGCGACTAAACGGTTAC 181
|||| ||||||||||| ||||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct 154 TGAATAAGCTGTACCTCGTGGTGAGAGCATCCGACAATGAAGCCGCGACGAAACGCTTAC 213
Query 182 ACATGGAGGTATTTGAGAAAGATCTTTTTAAGGTGTTGAGAGAGAATCTTGGCGATGAGA 241
|| |||| ||| |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 214 GCACAGAGGCATTCGAGAAAGATCTTTTCAAGGTGTTAAGAGATAATCTTGGCGATGAGA 273
Query 242 AATTAAATACATTGTTGTACGAAAAAGTTGTTTCGGTCCCAGGTGATATAGCGACT-GAT 300
|||| ||||||||||||| |||||||||||| ||||| |||||||||| |||| | |||
Sbjct 274 AATTGAATACATTGTTGTCCGAAAAAGTTGTCCCGGTCGCAGGTGATATCGCGA-TGGAT 332
Query 301 CAGTTAGGCATTAATGACTCTGATCTTAA-AGAACGTATGCGAAAAGAAATCGATATTGT 359
|| |||||||| || |||||| ||| ||| ||||||||||| ||||||||||||||||||
Sbjct 333 CATTTAGGCATGAAGGACTCTAATC-TAAGAGAACGTATGCAAAAAGAAATCGATATTGT 391
Query 360 TGTCAATGTTGCAGCTACAACAAACTTT-GACGAAAGATATGATGTTGGGCTTGGGATCA 418
||||||||| ||||||||||| || ||| ||||| ||||||||| |||| ||||| || |
Sbjct 392 TGTCAATGTCGCAGCTACAACTAA-TTTCGACGAGAGATATGATATTGGTCTTGGAATAA 450
Query 419 ACACATTTGGAGCTCTCAACGTCCTTAACTTTGCCAAAAAATGTGTTAAAGTTCAACTGG 478
||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||
Sbjct 451 ACACATTTGGAGCTCTCAATGTCCTTAACTTCGCCAAAAAATGTGTTAAAGCTCAATTGC 510
Query 479 TTCTCCATGTCTCAACTGCTTATGTTTGCGGAGAAAAGCCAGGTCTCATACCTGAAAAAC 538
|||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 511 TTCTCCATGTTTCAACTGCTTATGTTTGCGGAGAAAAACCAGGTCTCCTACCTGAAAAAC 570
Query 539 CATTCATCATGGAAGATATTCGTAACGATAATGGTCTTCAATTGGATATAAATCTTGAAA 598
| ||| |||||||||| ||| |||| || ||||||||||||||||||||||| |||||||
Sbjct 571 CGTTCGTCATGGAAGAGATTTGTAATGAGAATGGTCTTCAATTGGATATAAACCTTGAAA 630
Query 599 GGGAGCTTATGAAGCAAAGACTGAAAGAACTTAATGAACAAGATTGTTCCGAAGAAGACA 658
||||||| ||||| |||||| |||||||||| |||||||||| |||||| ||||||| ||
Sbjct 631 GGGAGCTGATGAAACAAAGATTGAAAGAACTCAATGAACAAGGTTGTTCAGAAGAAGGCA 690
Query 659 TTACTCTCTCCATGAAAGAACTCGGAATGGAAAGGGCAAAGCGTCATGGATGGCCAAACA 718
|||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 691 CTACTTTCTACATGAAAGAACTCGGCATGGAAAGGGCAAAGCTTCATGGATGGCCAAACA 750
Query 719 CATATGTTTTCACCAAATCAATGGGAGAAATGCTTCTTGGTAACCACAAAGAAAATCTTC 778
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 751 CATATGTTTTCACCAAATCGATGGGAGAGATGCTTCTTGGTAACCATAAAGAAAATCTTC 810
Query 779 CCCTCGTTATCATCCGTCCCACGATGATCACTAGCACTCTTTCGGAACCTTTTCCTGGTT 838
| ||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 811 CTCTCGTCATTATCCGTCCCACGATGATCACTAGCACTCTTTTTGAACCATTTCCTGGTT 870
Query 839 GGATCGAAGG-CTTAAAAACTGTCGACAGCGTGATTATTGCATACGGAAAGGGAGTGCTC 897
|||| ||||| | ||| |||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 871 GGATTGAAGGAC-TAAGAACTGTAGACAGTGTAATTATTGCGTACGGAAAGGGAGTGCTC 929
Query 898 AAGTGTTTTCTTGTCGATGTAAACTCGGTCTGCGATATGATACCAGTGGATATGGTAGCA 957
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 930 AAGTGTTTTCTTGTCGATGTAAACTCGGTTTGCGATATGATACCAGCGGATATGGTGGCA 989
Query 958 AACGCAATGATCACGGCTGCAGCCAAACACGCTGGAGGTTCAGGGGTTCACATGGTGTAT 1017
||||| |||||| | |||||||||| ||| |||||||||||| |||||||||||||||
Sbjct 990 AACGCGATGATCGCAGCTGCAGCCACACATGCTGGAGGTTCAAAGGTTCACATGGTGTAC 1049
Query 1018 CATGTCGGCTCCTCTCATCAGAACCCAGTGACATTTGGAGAGATTCATGAGATTGCGGCT 1077
|| || || || ||||| || |||||| | | || ||||||||| | ||| ||| | |
Sbjct 1050 CAAGTTGGTTCATCTCACCAAAACCCAATAATATATGGAGAGATCCGTGAAATTTTGTTT 1109
Query 1078 CGTTACTTCATAAAAAACCCTTTGCGCAGTCGCAATGGCTCGCTCATAACCGTCTCGAAA 1137
||||||||| |||||| | |||||||||||||||||||| | ||||| |||||||||
Sbjct 1110 TGTTACTTCACCAAAAACTCGTTGCGCAGTCGCAATGGCTCAATGATAACTGTCTCGAAA 1169
Query 1138 CTGAGGTTCATATCAAC-CATGGCTTTGTTCAGTCTCTACATGACCTTACGTTACAAACT 1196
||| | | ||| |||| | ||||||||||||| |||||||||||| |||||||||||||
Sbjct 1170 ATGAAGCTGATACCAACTC-TGGCTTTGTTCAGCCTCTACATGACCATACGTTACAAACT 1228
Query 1197 ACCTCTCCAGTTGTTAAAATTGATTGATATAATATATCCTTGGAGA-AACGGAGACAAAT 1255
|||| ||||||| ||||||||| |||||||||||||||||| ||| || |||||| |||
Sbjct 1229 ACCTGTCCAGTTATTAAAATTGGTTGATATAATATATCCTTCGAGGGAA-GGAGACGAAT 1287
Query 1256 ATGGAGACAAGAACCGCAAAATTGAGGTGGTGATGAGATTGGTAGAGCTTTATGAGCCGT 1315
| | |||| |||||||| || || ||||||||||||||||| ||||||| ||||| |
Sbjct 1288 ACAAAAACAAAAACCGCAAGATCGATATGGTGATGAGATTGGTAAAGCTTTACGAGCCTT 1347
Query 1316 ATGTACTTTTCAAGGGAATATTCGACGATAGAAATAC-AAAGAGTTTATGCGCAAACCAG 1374
| ||||| |||||||| |||||||||||||| ||||| ||| | || |||||| || |||
Sbjct 1348 ACGTACTCTTCAAGGGCATATTCGACGATAGGAATACTAAAAACTT-ATGCGCCAAGCAG 1406
Query 1375 AAGGAAGAGGAGAGCAAAAATACAGAAAAAATGATGTTTGATTTCGACCC-AAAAGGCAT 1433
|| |||||||| | || |||| ||||||| | ||||||||||||||||| |||| |||
Sbjct 1407 AAAGAAGAGGACAACAGAAATTCAGAAAATTTTATGTTTGATTTCGACCCTAAAAT-CAT 1465
Query 1434 TAATTGGGGGGATTATCTCACAAATATACATTTTTCTGGTCTCATCACCCACGTACTTAA 1493
||| ||| |||||||| | |||| |||| || |||| |||||||| ||||| |||||
Sbjct 1466 TAAATGGAAAGATTATCTTATAAATGTACACATTCCTGGCCTCATCACTCACGTGCTTAA 1525
Query 1494 AAAGTAA 1500
||||||
Sbjct 1526 GAAGTAA 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5