BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484870 Length=493 Score E Sequences producing significant alignments: (Bits) Value AT3G44590.2 | Symbols: | 60S acidic ribosomal protein family |... 717 0.0 > AT3G44590.2 | Symbols: | 60S acidic ribosomal protein family | chr3:16163850-16164931 FORWARD LENGTH=651 Length=651 Score = 717 bits (388), Expect = 0.0 Identities = 463/498 (93%), Gaps = 10/498 (2%) Strand=Plus/Plus Query 1 AAAGCTTGTAGCTTCTTGCTCCTCAAATCTTCTTG--G-AAAATGAAGGTTGCCGCTGCT 57 ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| Sbjct 1 AAAGCTTGTAGCTTCCTGCTCCTCAAATCTTCTTGCAGAAAAATGAAGGTTGCCGCTGCT 60 Query 58 TTTCTCCTCGCTGTTTTGGGCGGAAACGCTAATCCTTGTGCTGAGAATATCAAAGATATC 117 || |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 61 TTCCTCCTCGCCGTTTTGGGCGGAAACGCTAATCCTTCTGCTGATAATATCAAAGATATC 120 Query 118 ATCGGAGCTGTTGGTGCTGATGTTGATGGAGAAAGCATTGAGCTTCTTTTGAAAGAAGTG 177 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 121 ATCGGAGCTGTTGGTGCTGATGTTGATGGAGAGAGCATTGAGCTTCTATTGAAAGAAGTG 180 Query 178 AGTGGTAAGGATATTGCTGAGCTGATTGCTTCTGGTAGGGAGAAGTTGGCGTCTGTGCCA 237 |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 AGTGGTAAAGACATTGCTGAGCTGATTGCTTCTGGTAGGGAGAAGTTAGCGTCTGTGCCA 240 Query 238 TCTGGTGGTGGTG-GCGCTGTTTCAGCTGTTCCGTCAAGTGGTGGTGGTGGTGCTCCTGC 296 ||||||||||||| | ||||||||||||| ||| ||||| ||||||||||||||| |||| Sbjct 241 TCTGGTGGTGGTGTG-GCTGTTTCAGCTGCTCCATCAAGCGGTGGTGGTGGTGCTGCTGC 299 Query 297 AGCTGCGGagaagaaagaagctaagaaggaagagaaagaagaGTCCGATGATGACATGGG 356 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 300 CCCTGCGGAGAAGAAAGAAGCCAAGAAGGAAGAGAAAGAAGAGTCTGATGATGACATGGG 359 Query 357 ATTCAGTCTCTTCGAGTAAGATTTTCGTCCC-ACCGAAATGAGTCGGAGATTTGATTTTT 415 |||||||||||||||||||| |||| ||||| || |||| |||||| ||||||||||||| Sbjct 360 ATTCAGTCTCTTCGAGTAAGGTTTTTGTCCCCACGGAAAGGAGTCG-AGATTTGATTTTT 418 Query 416 TGTTCTCTTAGTGGATCTGGTTTTTGATTCTTGGATTACGAATTTTACTC---AGTTAAT 472 |||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||| Sbjct 419 TGTTCTCTTAGTGGTTCTGGTTTTTGCTTCTTGGATTACGAATTTTACTCCTTAGATAAT 478 Query 473 GAAGCAAGAAGAGTTTTT 490 |||||||||||||||||| Sbjct 479 GAAGCAAGAAGAGTTTTT 496 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23509580796 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5