BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484870
Length=493
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44590.2 | Symbols: | 60S acidic ribosomal protein family |... 717 0.0
> AT3G44590.2 | Symbols: | 60S acidic ribosomal protein family
| chr3:16163850-16164931 FORWARD LENGTH=651
Length=651
Score = 717 bits (388), Expect = 0.0
Identities = 463/498 (93%), Gaps = 10/498 (2%)
Strand=Plus/Plus
Query 1 AAAGCTTGTAGCTTCTTGCTCCTCAAATCTTCTTG--G-AAAATGAAGGTTGCCGCTGCT 57
||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1 AAAGCTTGTAGCTTCCTGCTCCTCAAATCTTCTTGCAGAAAAATGAAGGTTGCCGCTGCT 60
Query 58 TTTCTCCTCGCTGTTTTGGGCGGAAACGCTAATCCTTGTGCTGAGAATATCAAAGATATC 117
|| |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 61 TTCCTCCTCGCCGTTTTGGGCGGAAACGCTAATCCTTCTGCTGATAATATCAAAGATATC 120
Query 118 ATCGGAGCTGTTGGTGCTGATGTTGATGGAGAAAGCATTGAGCTTCTTTTGAAAGAAGTG 177
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 ATCGGAGCTGTTGGTGCTGATGTTGATGGAGAGAGCATTGAGCTTCTATTGAAAGAAGTG 180
Query 178 AGTGGTAAGGATATTGCTGAGCTGATTGCTTCTGGTAGGGAGAAGTTGGCGTCTGTGCCA 237
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AGTGGTAAAGACATTGCTGAGCTGATTGCTTCTGGTAGGGAGAAGTTAGCGTCTGTGCCA 240
Query 238 TCTGGTGGTGGTG-GCGCTGTTTCAGCTGTTCCGTCAAGTGGTGGTGGTGGTGCTCCTGC 296
||||||||||||| | ||||||||||||| ||| ||||| ||||||||||||||| ||||
Sbjct 241 TCTGGTGGTGGTGTG-GCTGTTTCAGCTGCTCCATCAAGCGGTGGTGGTGGTGCTGCTGC 299
Query 297 AGCTGCGGagaagaaagaagctaagaaggaagagaaagaagaGTCCGATGATGACATGGG 356
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CCCTGCGGAGAAGAAAGAAGCCAAGAAGGAAGAGAAAGAAGAGTCTGATGATGACATGGG 359
Query 357 ATTCAGTCTCTTCGAGTAAGATTTTCGTCCC-ACCGAAATGAGTCGGAGATTTGATTTTT 415
|||||||||||||||||||| |||| ||||| || |||| |||||| |||||||||||||
Sbjct 360 ATTCAGTCTCTTCGAGTAAGGTTTTTGTCCCCACGGAAAGGAGTCG-AGATTTGATTTTT 418
Query 416 TGTTCTCTTAGTGGATCTGGTTTTTGATTCTTGGATTACGAATTTTACTC---AGTTAAT 472
|||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 419 TGTTCTCTTAGTGGTTCTGGTTTTTGCTTCTTGGATTACGAATTTTACTCCTTAGATAAT 478
Query 473 GAAGCAAGAAGAGTTTTT 490
||||||||||||||||||
Sbjct 479 GAAGCAAGAAGAGTTTTT 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23509580796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5