BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484875

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44718.1 | Symbols:  | Plant thionin family protein | chr3:1...   311    2e-84


> AT3G44718.1 | Symbols:  | Plant thionin family protein | chr3:16266111-16266314 
REVERSE LENGTH=204
Length=204

 Score =  311 bits (168),  Expect = 2e-84
 Identities = 194/206 (94%), Gaps = 4/206 (2%)
 Strand=Plus/Plus

Query  1    ATGACAAAATGGAATGTAG-TAATGGTAATATTGTTGGTGATGATTGCTGCGATAGGAGT  59
            |||||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||| 
Sbjct  1    ATGACAAAATCGAATGT-GATAATGGTAATATTGTTGGTGATGATTGCTGCAATAGGAGG  59

Query  60   AGAAGCAAGACATAAACATAGAAAGACTTGGATAGGTTGCTTTCGGTATTGTTCTCGCA-  118
            ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct  60   AGAAGCACGACATAAACATAGAAAGACTTGGATAGGTTGCTTTAGGTATTGTTCTCGCAG  119

Query  119  CTTGCAGCGAGTACGATGGAATTTGCTTTGAAGATTGTAAGATCAAATGTGGTGGTCCTA  178
            | || |||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  120  C-TGTAGCGAGTACGATGGAAATTGCTTTGAACATTGTAAGATCAAATGTGGTGGTCCTA  178

Query  179  CTCCTCCAAAAACTAATTCAAGGTAG  204
            ||||||||||||||||||||||||||
Sbjct  179  CTCCTCCAAAAACTAATTCAAGGTAG  204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5