BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484876
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44720.1 | Symbols: ADT4 | arogenate dehydratase 4 | chr3:16... 2001 0.0
AT1G08250.1 | Symbols: ADT6 | arogenate dehydratase 6 | chr1:25... 497 9e-140
> AT3G44720.1 | Symbols: ADT4 | arogenate dehydratase 4 | chr3:16271652-16273344
FORWARD LENGTH=1693
Length=1693
Score = 2001 bits (1083), Expect = 0.0
Identities = 1233/1308 (94%), Gaps = 0/1308 (0%)
Strand=Plus/Plus
Query 49 TTTGTCTTACCATCATTACCAAATCATGCAAGCCGCTACGTCGTGTGATCTCAAGTTCCG 108
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 83 TTTGTCTTACCATCATTACCAAACCATGCAAGCCGCAACGTCGTGTGATCTCAAGTTCCG 142
Query 109 ATCAACAAATCCGACGGCTAGGAACAAATGTTTCTCTCACGCGATTCCAAAGCGCGTGGC 168
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 143 ATCAACAGATCCGACGTCTAGGAACAAATGTTTCTCCCACGCGATTCCAAAGCGCGTGGC 202
Query 169 TGTTACGTGCGGTTATAGGTCGGAGTCGTTTAGCTTCCCTAACGGTGTCTCCGTGAGTCG 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TGTTACGTGCGGTTATAGGTCGGAGTCGTTTAGCTTCCCTAACGGTGTCTCCGTGAGTCG 262
Query 229 ATCTGATTGGCAAAGCTCATGTGCCATTTTATCTAGCAAAGTTGCTTCTGTTGAAAATCC 288
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 263 ATCTGATTGGCAAAGCTCATGTGCCATTTTATCTAGTAAAGTTGCTTCTGTTGAAAATAC 322
Query 289 CGGTGGTTTAGCCGACAAGATCGCCGCCGTTAATGGTCACACGAACGGCTCTGTTAATCT 348
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 323 CGGTGGTTTAGCGGACAAAATCGCCGCCGTTAATGGTCACACGAACGGCTCTGTGAATCT 382
Query 349 TGGTATCGTCGCCGTTGAGTCTACTAACGGAAAATTAGCTCCGGTTCAGCCGTTGACTAT 408
|||| |||||||||||||||| ||||||||||| |||||||| | |||||||||||||||
Sbjct 383 TGGTCTCGTCGCCGTTGAGTCAACTAACGGAAAGTTAGCTCCTGCTCAGCCGTTGACTAT 442
Query 409 TACGGATCTATCTCCGGCACCGTTGCATGGTTCTAGTCTACGTGTAGCTTATCAAGGTGT 468
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 443 TACTGATCTATCTCCGGCACCGTTGCATGGTTCTAGTCTACGTGTAGCTTACCAAGGCGT 502
Query 469 TCCCGGTGCTTACTCGGAGGCAGCCGCCGGAAAAGCTTATCCCAATTGCGATGCTATTCC 528
|||||| ||||||||||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct 503 TCCCGGAGCTTACTCGGAAGCAGCTGCCGGAAAAGCTTATCCCAATTGCGACGCCATTCC 562
Query 529 TTGTGACCAGTTCGACGTTGCTTTTCAGGCGGTGGAGCTTTGGATCGCTGATAGAGCTGT 588
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 563 TTGTGACCAGTTTGACGTTGCTTTTCAGGCGGTGGAGCTTTGGATCGCTGATCGAGCTGT 622
Query 589 GCTTCCGGTGGAGAACTCACTCGGTGGTTCCATTCATCGGAACTATGATCTCCTCCTCCG 648
|||||||||||||||||||||||||||||| || ||||| ||||||||||| || |||||
Sbjct 623 GCTTCCGGTGGAGAACTCACTCGGTGGTTCGATCCATCGAAACTATGATCTTCTTCTCCG 682
Query 649 TCACCGTCTTCATATTGTTGGAGAAGTTCAGATTCCGGTTCACCATTGCCTCCTTGCACT 708
|||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 683 TCACCGTCTTCACATCGTTGGAGAAGTTCAGATTCCGGTCCACCATTGCCTCCTCGCACT 742
Query 709 CCCGGGAGTCCGAACGGATTGTGTTTCGCGGGTGATCTCTCACCCGCAAGCGCTAGCCCA 768
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 743 CCCGGGAGTCCGAACTGACTGTGTTTCGCGGGTGATCTCTCACCCGCAAGCCCTAGCGCA 802
Query 769 AACAGAACACTCCCTCGATGTTCTCACTCCACATGCGGCGCGTGAGGCTTTCCACGACAC 828
|| |||||||||||||| || || || |||||||| ||||||||||||||||| |||||
Sbjct 803 GACGGAACACTCCCTCGACGTCCTTACACCACATGCAGCGCGTGAGGCTTTCCATGACAC 862
Query 829 AGCGGCTGCTGCGGAATACATCGCAGCTAACGACCTACATGACACGGCGGCTGTAGCCAG 888
||||||||||||||| || ||| ||||||||||||||||||||||||||||||| || ||
Sbjct 863 AGCGGCTGCTGCGGAGTATATCTCAGCTAACGACCTACATGACACGGCGGCTGTGGCGAG 922
Query 889 CGCACGCGCCGCTGAGCTCTACAACCTCCAGATATTAGCTGATGGAATTCAAGACGACCC 948
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 923 CGCACGCGCCGCTGAGCTTTACAACCTCCAGATATTAGCGGATGGGATTCAAGACGACCC 982
Query 949 GGGGAACGTCACGCGCTTCCTAATGTTAGCGCGTGAGCCGATAATCCCACGCACGGACCG 1008
|||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 983 GGGGAACGTCACTCGTTTCCTAATGTTGGCGCGTGAGCCTATAATCCCACGCACGGACCG 1042
Query 1009 GCCATTCAAGACTAGCATAGTCTTTGCTGCCCAAGAGCACAAAGGAACTAGTGTTCTCTT 1068
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1043 GCCATTCAAGACTAGCATCGTCTTTGCTGCCCAAGAGCACAAAGGAACTAGCGTCCTCTT 1102
Query 1069 CAAAGTCCTCTCGGCCTTCGCTTTCAGAGACATTAGCCTGACCAAGATCGAGTCCCGGCC 1128
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TAAAGTCCTCTCGGCTTTCGCTTTCAGAGACATTAGCCTGACCAAGATCGAGTCCCGGCC 1162
Query 1129 TCATCACAACCGCCCACTCAGGGTCGTTGGTGACGGGAGCTTCGGGACATCGAAGAACTT 1188
||| || |||||||| || ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1163 TCACCATAACCGCCCGCTTAGGGTTGTTGGTGACGGGAGCTTTGGGACGTCGAAGAACTT 1222
Query 1189 CGAGTACATGTTTTACGTGGATTTTGAAGCGTCGATGGCGGAGCCGCGTGCACAGAACGC 1248
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1223 CGAGTACATGTTTTACGTGGATTTTGAGGCATCGATGGCTGAGCCGCGTGCACAGAACGC 1282
Query 1249 GCTTGCGGAGGTTCAAGAGTACACGTCGTTCCTAAGGGTGTTGGGAAGTTACCCCATGGA 1308
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1283 GCTTGCGGAGGTTCAAGAGTACACGTCGTTCCTAAGGGTGCTGGGAAGTTACCCCATGGA 1342
Query 1309 TATGACACCATGGTCCATGACATCCACAGAAGACGCATGACCCCATCG 1356
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1343 TATGACACCATGGTCCATGACATCCACAGAAGAAGCATGACCCCATCG 1390
> AT1G08250.1 | Symbols: ADT6 | arogenate dehydratase 6 | chr1:2588857-2590301
REVERSE LENGTH=1445
Length=1445
Score = 497 bits (269), Expect = 9e-140
Identities = 717/931 (77%), Gaps = 40/931 (4%)
Strand=Plus/Plus
Query 410 ACGGATCTATCTCCGGCACCGTTGCATGGTTCTAGTCTACGTGTAGCTTATCAAGGTGTT 469
|||||||| || ||||| ||| |||| || |||| |||||| || |||||||||||||||
Sbjct 376 ACGGATCTCTCGCCGGCTCCGATGCACGGATCTAATCTACGCGTCGCTTATCAAGGTGTT 435
Query 470 CCCGGTGCTTACTCGGAGGCAGCCGCCGGAAAAGCTTATCCCAATTG-CGATGCTATTCC 528
|||||||||||||| || |||||||| || ||||||||||| ||||| | | ||||| ||
Sbjct 436 CCCGGTGCTTACTCTGAAGCAGCCGCTGGTAAAGCTTATCCTAATTGTCAA-GCTATACC 494
Query 529 TTGTGACCAGTTCGACGTTGCTTTTCAGGCGGTGGAGCTTTGGATCGCTGATAGAGCTGT 588
||| || || || || ||||| ||||| |||||||||||||||||||| ||| | |||||
Sbjct 495 TTGCGATCAATTTGAGGTTGCGTTTCAAGCGGTGGAGCTTTGGATCGCAGATCGTGCTGT 554
Query 589 GCTT-CCGGTGGAGAACTCACTCGGTGGTTCCATTCATCGGAACTATGATCTCCTCCTCC 647
|| |||||||||||||| ||||| ||||| || || || || || |||||||||||||
Sbjct 555 T-TTACCGGTGGAGAACTCTCTCGGCGGTTCTATCCACCGTAATTACGATCTCCTCCTCC 613
Query 648 GTCACCGTCTTCATATTGTTGGAGAAGTTCAGATTCCG-GTTCACCATTGCCTCCTTGCA 706
|||||||||||||||| || || |||||||| | ||| ||||| || || | || ||
Sbjct 614 GTCACCGTCTTCATATAGTCGGCGAAGTTCA-ACTCCCTGTTCATCACTGTTTACTGGCT 672
Query 707 CT-CCCGGGAGTCCG-AACG-GATTGTGTTTCGCGGGTGATCTCTCACCCGCAAGCG-CT 762
|| ||||| || || || | | || | | | || |||||||| ||||| |||| | ||
Sbjct 673 CTTCCCGGC-GTTCGTAAAGAG-TT-TCTCACACGTGTGATCTCACACCCTCAAG-GTCT 728
Query 763 AGCCCAAACAGAACACTCCCTCG-AT-GTTCTCACTCCACATG-CGGCGCGTGAGGCT-T 818
|| || || ||| | ||| | | || ||| | ||| || | |||||||| |
Sbjct 729 CGCTCAGTGTGAGCACACGCTCACAAAGCTCGGACTT-A-ATGTCG-CACGTGAGGCAGT 785
Query 819 TCCACGACACAGC-GGCTGCTGCGGAATACATCGCAGCTAACGACCTACATGACACGGCG 877
| | ||||| || || || || || | |||||| ||||| |||| | ||||| ||
Sbjct 786 TG-ATGACACCGCAGGA-GCCGCTGAGTTCATCGCCTCTAACAACCTCCGCGACACAGCC 843
Query 878 GCTGTAGCCAGCGCACGCGCCGCTGAGCTCTACAACCTCCAGATATTAGCTGATGGAATT 937
||| | || || ||||||||||| ||| | ||| | |||| || | ||||| |||
Sbjct 844 GCTATCGCGAGTGCACGCGCCGCCGAGATATACGGGTTGGAGATTTTGGAAGATGGGATT 903
Query 938 CAAGACGACCCGGGGAACGTCACGCGCTTCCTAATGTTAGCGCGTGAGCCGATAATCCC- 996
|| |||||| | | ||||| ||||||||| | ||| | ||||||||||| || || ||
Sbjct 904 CAGGACGACGTGAGTAACGTGACGCGCTTCGTGATGCTGGCGCGTGAGCCAATCATACCT 963
Query 997 ACGCACGGACCGGCCATTCAAGACTAGCATAGTCTTTGCTGCCCAAGAGCACAAAGGAAC 1056
| | || || | || |||||||||||||| |||||||| || | ||| | || |||||
Sbjct 964 A-GAACAGATAGACCGTTCAAGACTAGCATTGTCTTTGC-GCAC--GAG-A-AA-GGAAC 1016
Query 1057 TAGTGTTCTCTTCAAAGTCCTCTCGGCCTTCGCTTTCAGAGACATTAGCCTGACCAAGAT 1116
|| || || ||||| || ||||| || ||||| ||||||||||||||| |||| |||||
Sbjct 1017 CAGCGTGCTTTTCAAGGTGCTCTCTGCTTTCGCCTTCAGAGACATTAGCTTGACGAAGAT 1076
Query 1117 CGAGTCCCGGCCTCATCACAACCGCCC-ACTCAGGGTCGTTGG-TGACGGGAGCT-TCGG 1173
||| || |||| |||||||||| || | |||||||||| || ||| | | | ||||
Sbjct 1077 CGAATCGAGGCCGAATCACAACCGTCCGA-TCAGGGTCGT-GGATGATGCCAA-TGTCGG 1133
Query 1174 GACATCGAAGAACTTCGAGTACATGTTTTACGTGGATTTTGAAGCGTCGATGGCGGAGCC 1233
||| ||||| | || |||||||||||||| || || || || || |||||||||||| |
Sbjct 1134 GACGGCGAAGCATTTTGAGTACATGTTTTATGTTGACTTCGAGGCCTCGATGGCGGAGGC 1193
Query 1234 GCGTGCACAGAACGCGCTTGCGGAGGTTCAAGAGTACACGTCGTTCCTAAGGGTG-TTGG 1292
|||||| |||||||||||||| |||||||| |||| || |||||| | ||||| ||||
Sbjct 1194 GCGTGCTCAGAACGCGCTTGCCGAGGTTCAGGAGTTTACATCGTTCTTGCGGGTGCTTGG 1253
Query 1293 GAAGTTACCCCATGGATATGACACCATGGTC 1323
|| |||| |||||||||||||| || |||||
Sbjct 1254 GA-GTTATCCCATGGATATGACTCCTTGGTC 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5