BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484877
Length=3507
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44730.1 | Symbols: ATKP1, KP1 | kinesin-like protein 1 | ch... 5600 0.0
> AT3G44730.1 | Symbols: ATKP1, KP1 | kinesin-like protein 1 |
chr3:16285741-16291048 FORWARD LENGTH=3607
Length=3607
Score = 5600 bits (3032), Expect = 0.0
Identities = 3353/3510 (96%), Gaps = 13/3510 (0%)
Strand=Plus/Plus
Query 1 AGCTCTGAGAAGGTACCAAGCGGTGGCATGGCTGAGACAGATGGACCAAGGCGCGGCGGA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 108 AGCTCTGAGAAGATACCAAGCGGTGGCATGGCTGAGACAGATGGACCAAGGCGCGATGGA 167
Query 61 GTCACTCCCGGAAAAACCGTCGGAAGACGAGTTCTCCCTCATTCTCCGCAACGGTCTCAT 120
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 168 GACACTCCCGGAAAAACCGTCGGAAGACGAGTTCTCCCTCGCCCTCCGCAACGGCCTCAT 227
Query 121 TCTCTGCAACGTCCTCAACAAAGTCAATCCCGGTTCTGTTCTCAAGGTGGTGGAGAATCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TCTCTGCAACGTCCTCAACAAAGTCAATCCCGGTTCTGTTCTCAAGGTGGTGGAGAATCC 287
Query 181 GATTACGCCAGCTGTTCAGTACGCCGAGGGAGCGGCGCAATCCGCAATTCAATATTTTGA 240
||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 288 GATTACGCCAGCTATTCAGTACGCGGATGGAGCGGCGCAATCGGCAATTCAATATTTTGA 347
Query 241 GAACATGAGGAACTTTCTTAAAGCTGTAGAGGATATGCAGCTTTTAACATTTGGAGCTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GAACATGAGGAACTTTCTTAAAGCTGTAGAGGATATGCAGCTTTTAACATTTGGAGCTTC 407
Query 301 TGATCTCGAAAAGGGAGGATCGTCGAATAAAGTAGTAGATTGCATTTTGTGTTTGAAAGG 360
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 408 TGATCTCGAGAAGGGAGGATCGTCGAACAAAGTAGTAGATTGTATTTTGTGTTTGAAAGG 467
Query 361 GTTTTACGAGTGGAAACAAGCGGGTGGAGTGGGAGTATGGAGGTATGGAGGGACTGTGAG 420
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 468 TTTTTACGAGTGGAAACAAGCGGGTGGAGTTGGAGTATGGAGGTATGGAGGGACTGTGAG 527
Query 421 GATAGTCTCTTTCAATCCAAAAGGCAGCTCTCCGCCGCAGTATGGGATTGGTAGTGAAAG 480
|||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 528 GATAGTATCATTCAATCGAAAAGGCAGTTCTCCGCCGCAGTATGGGATTGGTAGTGAAAG 587
Query 481 CACTACCGATGAGTCTGTTTCTTTGGACGAATCTGAGTCTTCTCAGTATGACCAGCTTTT 540
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 588 TACTACCGATGAGTCTGTTTCTTTGGATGAATCTGAGTCTTCTCAGTATGACCAGCTTTT 647
Query 541 GGATTTTCTTCACCTTTCTAATGAGATTTCAACTGAGGAATCTGAAACTGCAATCTCCAT 600
|||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 648 GGATTTTCTTCATCTTTCTAATGAGATCTCAGCTGAGGAATCTGAAACTGCAATCTCCTT 707
Query 601 GGCCTTTCTTTTTGATCATTTTGCGCTTCAGCTTCTACATGGTTATATCAAAGAGAGTGA 660
||| ||||||||||||||||| ||||||||||||||||||||||| | || ||||||||
Sbjct 708 GGCTTTTCTTTTTGATCATTTCGCGCTTCAGCTTCTACATGGTTACCTTAAGGAGAGTGA 767
Query 661 TGGGATCAACGATATGCCTTTAAATGAAATGGTGATTGATACATTGCTCAACAGGGTAGT 720
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 768 TGGGATCAATGATATGCCTTTAAATGAAATGGTGATTGATACATTGCTGAACAGGGTAGT 827
Query 721 TAAGGATTTCTCTGCAATACTAGTTTCTCAGGGTGCTCAGTTGGGTTCGTTTCTAAAGAA 780
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 828 TAAGGATTTCTCTGCAATACTAGTTTCTCAGGGAGCTCAGCTGGGTTCGTTTCTAAGGAA 887
Query 781 GATACTGAAATGTGATAACGGGGATCTGTCAAGATCAGAGTTTTTAGCAGCAGTCTTCAG 840
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 888 AATACTGAAATGTGATAACGGGGATCTGTCAAGATCAGAGTTTCTAGCAGCAGTCTTCAG 947
Query 841 ATACCTTCAGCACAGAAAAGATTTGGTGTCGAAGGAGTTTTCAAAGTTTTGTAAATGTGG 900
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 948 ATACCTTCAGCACAGAAAAGATTTGGTGTCAAAGGAGTTTTCAAAGTTTTGTAAATGTGG 1007
Query 901 CGGAAAGCTTGAGTTTATTAGACCAAACGTCAGCGAGTTTTCTCCTGGTCATGCAGAAGC 960
||||||||||||||||| ||||| ||||| | |||| |||||||| ||||||| ||||||
Sbjct 1008 CGGAAAGCTTGAGTTTAGTAGACTAAACGCCCGCGAATTTTCTCCGGGTCATGTAGAAGC 1067
Query 961 TATTGGTCTTCAACAGAAAGAGCTTGAGGATGTAAAATCAAATTTTGTGGAAACAAGAAG 1020
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1068 TATTGGTCTTCAACAGAAAGAGCTGGAGGAAGTTAAATCAAATTTTGTGGAAACAAGAAG 1127
Query 1021 CCAAGTTAAACAAATGCAGTCAGAATGGCAGAAAGAGCTTCAAAGGATAGTCCATCACGT 1080
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1128 CCAAGTTAAACAAATGCAGTCAGAATGGCAGAAAGAGCTTCAGAGGATAGTCCATCACGT 1187
Query 1081 TAAGGCCATGGAAGTTACATCTTCTTCTTACCACAAGATTCTGGAGGAAAATCGCTTACT 1140
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1188 TAAGGCCATGGAAGTTACATCTTCTTCTTACCACAAGGTTCTGGAGGAAAATCGCTTACT 1247
Query 1141 TTACAATGAGGTCCAAGATCTCAAAGGGACCATTAGAGTCTACTGCAGAGTCAGACCTTT 1200
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1248 TTACAATGAGGTTCAAGATCTCAAAGGCACCATTAGAGTTTACTGCAGAGTCAGACCTTT 1307
Query 1201 CTTACAAGGACAAAAAGATATGCAATCAACCGTTGATTATATTGGAGAAAATGGTAATAT 1260
||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1308 CTTCCAAGAACAAAAAGATATGCAATCAACTGTGGATTATATTGGAGAAAATGGTAATAT 1367
Query 1261 TATAATTAATAATCCTTTCAAGCAGGAAAAAGATGCACGAAAAATATTTGCCTTCAACAA 1320
||| ||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 1368 TATCATTAACAATCCTTTCAAGCAGGAGAAAGATGCACGGAAAATATTTTCCTTCAACAA 1427
Query 1321 AGTATTTGGACAGAATGTCTCACAAGAGCAAATCTACATTGACACTCAGCCGGTAATAAG 1380
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1428 AGTATTTGGACAGACTGTCTCACAAGAGCAAATCTACATTGACACTCAACCGGTAATAAG 1487
Query 1381 GTCCGTCCTTGACGGATTCAATGTTTGTATCTTCGCGTATGGGCAAACCGGTTCAGGGAA 1440
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GTCCGTCCTCGACGGATTCAATGTTTGTATCTTCGCGTATGGGCAAACCGGTTCAGGGAA 1547
Query 1441 AACGTATACGATGAGTGGGCCAGATCTGATGACTGAAACAACTTGGGGCGTGAATTACCG 1500
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1548 AACGTATACGATGAGTGGGCCAGATCTGATGACGGAGACAACTTGGGGCGTGAACTACCG 1607
Query 1501 AGCTCTACGTGATCTCTTCCAGCTTTCAAATGCCAGAACACATGTGGTGACTTATGAAAT 1560
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1608 AGCTCTACGCGATCTCTTCCAGCTTTCAAATGCAAGAACACATGTGGTGACTTATGAAAT 1667
Query 1561 TGGAGTCCAAATGATAGAAATATATAATGAACAAGTTAGAGATTTACTAGTCAGTGATGG 1620
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1668 TGGAGTCCAAATGATCGAAATATATAATGAACAAGTTAGAGATCTACTAGTCAGTGATGG 1727
Query 1621 TTCCTCCAGAAGATTAGACATACGCAATAATTCTCAACTCAATGGCCTTAATGTACCCGA 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 TTCCTCCAGAAGATTAGACATACGCAATAATTCTCAACTCAATGGCCTTAATGTACCCGA 1787
Query 1681 CGCAAGCTTGATTCCAGTTTCTAATACTCGAGATGTTCTTGATTTGATGAGGATTGGCCA 1740
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1788 TGCAAACTTGATTCCAGTTTCTAATACTCGAGATGTCCTTGATTTGATGAGGATTGGCCA 1847
Query 1741 AAAGAATCGTGCAGTGGGTGCCACTGCTTTGAATGAGAGGAGCAGTCGTTCTCATAGTGT 1800
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1848 AAAGAATCGTGCTGTGGGTGCCACTGCTTTGAATGAGAGGAGCAGCCGTTCTCATAGTGT 1907
Query 1801 CTTAACCGTTCACGTCCAAGGAAAAGAATTGGCCTCAGGGTCCATTTTAAGAGGCTGCCT 1860
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1908 ATTAACTGTTCACGTCCAAGGAAAAGAATTGGCCTCAGGATCCATTTTAAGAGGCTGCCT 1967
Query 1861 TCATTTAGTGGATTTGGCTGGAAGTGAAAGAGTAGAAAAATCCGAAGCTGTAGGCGAGAG 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 TCATTTAGTGGATTTGGCTGGAAGTGAAAGAGTAGAAAAATCCGAAGCTGTAGGCGAGAG 2027
Query 1921 ACTCAAAGAAGCTCAACACATAAACAAATCGTTGTCTGCATTAGGAGATGTCATCTATGC 1980
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2028 ACTCAAAGAAGCTCAACACATAAACAAATCGTTGTCTGCATTAGGAGATGTCATTTATGC 2087
Query 1981 ACTTGCACAAAAGAGTTCCCACGTTCCCTACAGAAATAGCAAGCTTACACAAGTTCTGCA 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 ACTTGCACAAAAGAGTTCCCACGTTCCCTACAGAAATAGCAAGCTTACACAAGTTCTGCA 2147
Query 2041 AGATTCCTTAGGTAAAATACTAAGACAAGCCAAAACTTTAATGTTTGTGCATATTAACCC 2100
|| ||||||||| | | ||| ||| ||| ||||||||||||| |||||||| ||
Sbjct 2148 GGACTCCTTAGGTGGA---C-AAG-CAA---AAA-CTTTAATGTTTGTACATATTAATCC 2198
Query 2101 TGAAGTTAACGCGGTAGGAGAGACTATAAGCACCCTTAAGTTTGCCCAAAGGGTTGCATC 2160
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2199 TGAAGTTAATGCGGTAGGGGAGACTATCAGCACCCTTAAGTTTGCCCAAAGGGTTGCATC 2258
Query 2161 TATTGAACTTGGAGCAGCTCGATCAAACAAGGAAACCGGTGAAATTCGAGATCTTAAGGA 2220
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 CATTGAGCTTGGAGCAGCTCGATCAAACAAGGAAACCGGTGAAATTCGAGATCTTAAGGA 2318
Query 2221 TGAGATATCAAGCCTTAAATCTGCGATGGAGAAGAAGGAAGCAGAGCTGGAACAATTGCG 2280
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2319 TGAGATATCCAGCCTTAAATCGGCCATGGAGAAGAAGGAAGCAGAGCTGGAACAATTGCG 2378
Query 2281 ATCAGGTAGCATTCGGAACACAACTGAATGTCAGAGAGCAAGAGCAGTTTCTCCTTTCCA 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2379 ATCAGGTAGCATTCGGAACACAACTGAATGTCAGAGAGCAAGAGCAGTTTCTCCTTTCCA 2438
Query 2341 TCTCCCAAGAACTGGTAACGGTGCTGGAACAAAGGCTGAGGCAAGTCCACAGCCAAATGA 2400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2439 TCTCCCAAGAACTGGTAACGGTGCTGGAACAAAGGCTGAGGCAAGTCCACAGCCAAACGA 2498
Query 2401 CAGTACCAGAAGCTACGAGACCAGAAGTTGCTCAACTGGCAAACAGAGAAAGTCAGGGTT 2460
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2499 CGGTACCAGAAGCTACGAGACCAGAAGTTGCTCAACTGGCAAGCAGAGAAAGTCAGGGTT 2558
Query 2461 TCCGTCTGCACTGAGAAACAGAGAAGCAAGCCCGAGGATGCCGAATCTAGCAGAAGAGAG 2520
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2559 TCCGTCTGCACTGAGAAATAGAGAAGCAAGCCCGAGGATGCCGAATCTAGCAGAAGAGAG 2618
Query 2521 GTTAAATCCGAGTCCGAGTAGGAGATCACTATCCACAGATAGAGCATCTGCCATCAAAAG 2580
||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2619 GTTAAATCCGAGTCCAAGTAGGAGATCACTATCCACAGACAGAGCATCAACCATCAAAAG 2678
Query 2581 TAGGAATAAGCCCGACGTTACTCAAAACCTTCCAGTTTCAAGAACACCTTTTCCAGCTAG 2640
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2679 TAGGAATAAGCCCGACGTTACCCAAAACCTTCCGGTTTCAAGAACACCTTTTCCAGCTAG 2738
Query 2641 AGTACCAGTAGCCAAATCCTTTTCAACTGTTCCATTGAACCCATCAGCAGAAAACAACCC 2700
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2739 AGTACCAGTAGTCAAATCCTTTTCAACTGTTCCATTGAACCCATCAGCAGAAAATAACCA 2798
Query 2701 CAGGCATCAAACAGATAACACTTCAGAGACATTTCACAATCATCAGAAGTTAAGCGCTCG 2760
||||| ||| || |||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 2799 CAGGCTTCACACTGATAACTCTTCAGAGGCATTTCAAAATCATCAGAAGTTAAGCGCTCG 2858
Query 2761 AAAGCTCTTCCCTGAGATCGAGGAGGAACACATTAGGCATGCACTTCACATACGTCAAGG 2820
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2859 AAAGCTCTTCCCTGAGATCGAGGAGGAACACATAAGGCATGCACTACACATACGTCAAGG 2918
Query 2821 TGGTGTTAAGAAGACCAGAGCCGAGAGCAGTAAAGCCAAGGCAAAGCAACCATCGCCAGC 2880
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2919 TGGTGTTAAGAAGACCAGAGCCGAGAGCAGTAAAGCCAAGGCAAAGCAACCATCACCAGC 2978
Query 2881 TAGGTTTCAGAAACTCGATGTTGGGATCAGTTTGCGTTCTGAGGCAGATTCTGAAGCAAA 2940
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2979 TAGGTTTCAGAAACTCGATGTTGGGATCAGTTTGCGTTCTGATGCAGATTCTGAAGCAAA 3038
Query 2941 GGTAGGAAATTATCAGACCCAAAAGGGGAACAACAACCACAATGTGATACACTCAAGATT 3000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3039 GGTAGGAAATTATCAGACCCAAAAGGGGAACAACAACCACAATGTGATACACTCAAGATT 3098
Query 3001 CCAAAACTTCGACGTGGGTATCAGCCTGTTCTCTGACCTCTGTGCCGGTGACAAATCAGA 3060
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 3099 CCAAAACTTCGACGTGGGTATCAGCCTATTCTCTGACCTTTGTGCCGGTGACAAATCAGA 3158
Query 3061 TTCAACACTCAAGAGTGATTCCTCAGAGACAGACAACGAACCACCCTCGAAATCTAAGAA 3120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3159 TTCAACACTCAAGAGTGATTCCTCAGAGACAGACAACGAACCACCCTCGAAATCTAAGAA 3218
Query 3121 TGCCCAAAGAAACGCGTCCAAAAACTCCCTCAACCACAAACTAAGGACGATTTATGCTCA 3180
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3219 TGCCCAAAGAAACTCGTCCAAAAACTCCCTCAACCACAAACTAAGGACGATCTATGCTCA 3278
Query 3181 TGAGGGCACTTCACTCATGGACGACAAGCCTTCAAATGATACAGCCCATATCAAAGAAGG 3240
||||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct 3279 TGAGGACACTTCACTCGTGGACGACAAGCCTTCTAATGGTACAGCCCATATCAAAGAAGG 3338
Query 3241 TAATAATAATATATCCATGCCTGAGTTCAGAAGAAGTCGTTCAACGCATCATGCAAGGTT 3300
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 3339 TAATAATAATATATCTATGCCTGAGTTCAGGAGAAGTCGTTCAACACATCATGCAAGGTT 3398
Query 3301 CATGGTACCATAGAAACATATCCAAGACTACAAAATATTTATCTCACAAATCCATCACAC 3360
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 3399 CATGGTACCATAGAAACATATCCAAGACTACAAAATATTTATCTCACACATCCGTCACAC 3458
Query 3361 ATCATATCCTTTGTACATTTTGAAGTTGGGGTTTCTGGA-CTTTTTCATGTCCTTATACT 3419
|||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| ||||
Sbjct 3459 ATCATATCCTTTGTACATTTTGAAGTTGGGTTTTCTGGATCTTTT-CATGTTCTTTTACT 3517
Query 3420 ACATAGTT-GTGACTGAGATTGAACTGTTTATCCTAA-GAACGAGTGTCCCACGTCGTAA 3477
|| |||| |||||||||||||||| ||||||| ||| |||||||||||||| |||| ||
Sbjct 3518 CCAGAGTTTGTGACTGAGATTGAACCGTTTATCATAAAGAACGAGTGTCCCATGTCGCAA 3577
Query 3478 AAGATATATTTATTCTTCTTGAGGTTCTTC 3507
||| ||||||||||||||||||||||||||
Sbjct 3578 AAGTTATATTTATTCTTCTTGAGGTTCTTC 3607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 174580961640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5