BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484880
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44750.1 | Symbols: HD2A, ATHD2A, HDA3, HDT1 | histone deace... 1157 0.0
> AT3G44750.1 | Symbols: HD2A, ATHD2A, HDA3, HDT1 | histone deacetylase
3 | chr3:16297979-16299779 FORWARD LENGTH=998
Length=998
Score = 1157 bits (626), Expect = 0.0
Identities = 806/890 (91%), Gaps = 24/890 (3%)
Strand=Plus/Plus
Query 1 TCTTTCATTTTTAGCTGCTCATAAACCCTAAAAATCCTCTC--TTTCTCAACCTCGATTC 58
|||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 TCTTACATTTTCAGCTGCTCATAAACCCTAAAAATCCTCTCTTTTTCTCAACCTTGATTC 60
Query 59 TTAGCTATGGAGTTCTGGGGAATTGAAGTTAAACCAGGGAAGCCAGTTACAGTGACTCCT 118
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 61 TTAGCCATGGAGTTCTGGGGAATTGAAGTTAAATCAGGAAAGCCAGTTACAGTGACTCCT 120
Query 119 AAAGAAGGCACTCTTATCCACGTTTCTCAGGCATCGCTTGGAGAATGTAAAAACAAGAAG 178
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAGAAGGCATTCTTATCCACGTTTCTCAGGCATCGCTTGGAGAATGTAAAAACAAGAAG 180
Query 179 GGAGAATTTGTGCCTTTACATGTAAAGGTTGGTAACCAGAACTTGGTTCTGGGAACTCTA 238
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GGAGAGTTTGTGCCTTTACATGTAAAGGTTGGGAACCAGAACTTGGTTCTGGGAACTCTA 240
Query 239 TCAACTGAGAACATCCCTCAGCTTTTCTGTGATTTGGTATTCGAAAAGGAGTTTGAGCTT 298
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TCGACTGAGAACATCCCTCAGCTTTTCTGTGATTTGGTATTCGACAAGGAGTTTGAGCTT 300
Query 299 TCTCACACTTGGGGAAAAGGAAGTGTCTACTTTGTTGGATACAAAACTCCCAACA-TCAA 357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 301 TCTCACACTTGGGGAAAAGGAAGTGTTTACTTTGTTGGATACAAAACTCCCAACATTGAG 360
Query 358 ATATCCTTTG-AATTCAGAGGAAGAAGAGGAAGAGGTTGAAGAAGTTCCTGCAGGGAATG 416
| | | |||| ||||||||||||||||| | |||||||||||||| |||||||
Sbjct 361 CCA--CAAGGCTATTCTGAGGAAGAAGAGGAAGAAGAGGAAGAAGTTCCTGCTGGGAATG 418
Query 417 CTGCTAAGGCTGTAGCAAAACCAAAGGCTAAGCCTGCAGAAGTGAAGCCAGCTGCTGAT- 475
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 419 CTGCCAAGGCTGTAGCTAAACCAAAGGCTAAGCCTGCAGAAGTGAAGCCAGCTGTTGATG 478
Query 476 ACTGAAGTGGATGACTCTGATTCCGACGAAATGGATGAAGATGATTCTGATGGTGATGAC 535
| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 479 A-TGAAGAGGATGAGTCTGATTCTGACGGAATGGATGAAGATGATTCTGATGGTGA-G-- 534
Query 536 GATTCAGAGGAAGAAGAGGAGACACCTACTCCTAAGAAGCCTGCATCAAGCAAGAAGAGA 595
||||| ||||||| | | ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 535 GATTCTGAGGAAG-A-A-GAG---CCTACACCTAAGAAGCCTGCATCAAGCAAGAAGAGA 588
Query 596 GCAAATGAGACTGCCCCTAAAGCACCTGTGTCATCAAAGAAGGCGAAAGTAGCAGTTACT 655
|| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 589 GCTAATGAAACTACCCCTAAAGCACCTGTGTCAGCAAAGAAGGCGAAAGTAGCAGTTACT 648
Query 656 CCTCAGAAAACAGGT-A-AAGATATAAAGACCCCCAAGACTGCAACCCAGAGCCCAAAGT 713
||||||||||||| | | |||| | |||| ||| |||||| ||||||||||||||
Sbjct 649 CCTCAGAAAACAGATGAGAAGA-AGAAAGGGGGA-AAGGCTGCAAACCAGAGCCCAAAGT 706
Query 714 CGGCCAGTCAAGTCTCCTGCGGTTCATGCAAAAAGACTTTCAACTCTGGGAATGCACTTG 773
|||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||
Sbjct 707 CGGCCAGTCAAGTCTCATGTGGTTCATGCAAGAAGACTTTCAACTCAGGGAATGCACTTG 766
Query 774 AGGCTCACAACAAGGCCAAGCATTCTGCCGCCAAGTGAAGTGGTTTCTTA---GAGCTTA 830
|| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 767 AGTCTCACAACAAGGCCAAGCACGCTGCTGCCAAGTGAAGTGGTTTCTTATTAGAGCTTG 826
Query 831 TGATATCTTTGGAATTTTGCCTCTAGTCTTTATGAAACCTTCGGATTTTC 880
|||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 827 TGATTTCTATGGAATTTTGCCTGTAGTCTTTATGAAACCTTCGGATTTTC 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5