BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484882
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44820.1 | Symbols: | Phototropic-responsive NPH3 family pr... 1247 0.0
> AT3G44820.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:16361370-16364610 REVERSE LENGTH=2649
Length=2649
Score = 1247 bits (675), Expect = 0.0
Identities = 733/762 (96%), Gaps = 0/762 (0%)
Strand=Plus/Plus
Query 153 TTGGTTTTGCAAAACAGGACTGTCAAGTGATATCACTGTTGTTGTTGATGATGTGAAGTT 212
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TTGGTTTTGCAAGACAGGACTGTCAAGTGATATCACTGTTGTTGTTGATGATGTGAAGTT 306
Query 213 CCATCTTCATAAGTTTCCATTGGTTTCTAAATGTGGAAAGCTAGCACGGATGTATGAAGA 272
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 307 CCATCTTCATAAGTTTCCATTGGTTTCAAAATGTGGAAAGCTAGCAAGGATGTATGAAGA 366
Query 273 TTCTAAAAGCACTGATAAGCAATCTCTCTGGACAACAGTGCTTGAAGAGTTCCCTGGTGG 332
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 367 TTCTAAAAGCACTGATAAGCAATCTCTCTGGACAACAGTCCTTGAAGAGTTCCCTGGTGG 426
Query 333 CGCAGACAATTTCTTGATAGTTGCGAGATTCTGTTACGGGACTCGAGTAGATATCACCTC 392
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 427 TGCAGACAATTTCTTGATAGTTGCGAGATTCTGTTACGGGGCTCGAGTAGATATCACCTC 486
Query 393 GAAAAACTTAGTTTCCATACACTGTGCAGCTGAGTACCTTGAAATGACAAATGAATATGG 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GAAAAACTTAGTTTCCATACACTGTGCAGCTGAGTACCTTGAAATGACAAATGAATATGG 546
Query 453 GGAAGATAACTTAATTTCCCAAGTTGAAACATTTTTGCACAAGCATGTGCTTCGCAATTG 512
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 547 GGAAGATAACTTGATTTCCCAAGTTGAAACTTTTTTGCACAAGCACGTGCTTCGCAATTG 606
Query 513 GAAAGACTGTATCTTGGCGTTACAAAGTTCTAACCCGGTGTTGAAGAGTGCAGAAAAGCT 572
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 607 GAAAGACTGTATCTTGGCGTTACAAAGCTCTAGTCCGGTGTTGAAGAGTGCAGAAAAGCT 666
Query 573 TCAGATGATACCCAAACTCATGAACGCTGTGTCCACGATGGTGTGTACTGACCCAAGTTT 632
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 667 TCAGATGATACCAAAACTCATGAACGCTGTGTCCACAATGGTGTGTACTGACCCGAGTTT 726
Query 633 GTTTGGATGGCCCATGATGATGTATGGTACATTGCAGAGTCCGGGTGGAAGCATTTTATG 692
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 727 ATTTGGATGGCCAATGATGATGTATGGTACATTGCAGAGTCCAGGTGGAAGCATTTTATG 786
Query 693 GAATGGAATAAACACGGGGGCGCGAATGAGAAGCTCGGGTTCGGATTGGTGGTATGAAGA 752
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 787 GAATGGAATAAACACGGGGGCGCGAATGAGAAGCTCAGGTTCGGATTGGTGGTATGAAGA 846
Query 753 TATCTCTTATCTTAGTGTAGATTTGTTTAAAAGGCTCATCAAGACGATGGAAACGAAAGG 812
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 847 TATCTCTTATCTTAGTGTAGATTTGTTTAAAAGACTCATCAAGACAATGGAAACAAAAGG 906
Query 813 TATACGTGCTGAAAGTTTAGCCGGTGCGATGATGTATTATGCGAGAAAGTACTTGCCGGG 872
|||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 907 TATACGTGCTGAAAGTTTAGCCGGCGCTATGATGTACTATGCGAGAAAGTACTTACCGGG 966
Query 873 TTTGGGACGGTGGCAGAGCGGAACAAGTGACAGCAGCAAAAG 914
||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 967 TTTAGGACGGTGGCAGAGTGGAACAAGTGACAGTAGCAAAAG 1008
Score = 1103 bits (597), Expect = 0.0
Identities = 678/718 (94%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 1027 GATAGCTACATGGCTGAGGTTGCTTCCGATGTGAATCTAAAACCGGATACGATGCGGTCT 1086
|||||||||||||| || || ||||| ||||||||||| |||||||||| |||||||||
Sbjct 1439 GATAGCTACATGGCAGAAGTCGCTTCTGATGTGAATCTGAAACCGGATAAAATGCGGTCT 1498
Query 1087 CTTGCAGCAGCTCTTCCAGAGTCTTCAAGACCCTTGTATGATGGTCTATACAGAGCATTT 1146
|||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| |||
Sbjct 1499 CTTGCAGCAGCTCTTCCAGAATCTTCAAGACCGTTGTATGATGGTTTATACAGAGCGTTT 1558
Query 1147 GATATCTATTTCAAGGAGCATCCATGGCTATCAGATAAAGACAAGGAACAACTCTGCAAC 1206
||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1559 GATATTTATTTCAAGGAGCATCCATGGCTATCAGATAGAGACAAGGAACAACTATGCAAC 1618
Query 1207 ATCATGGACTATCAAAGACTCTCTATAGACGCTTGCGCTCATGCTTCCCATAACGATAGG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ATCATGGACTATCAAAGACTCTCTATAGACGCTTGCGCTCATGCTTCCCATAACGATAGG 1678
Query 1267 TTACCACTCAGAGTTGTTCTTCAAGTCCTCTTCTTTGAACAAATGCATCTCAGAACCGCT 1326
||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1679 TTACCGCTTAGAGTTGTTCTCCAAGTACTCTTCTTTGAACAAATGCATCTCAGAACCGCT 1738
Query 1327 CTTGCAGGCGGTCTCAATGTTGCAAACACCGAAACAGCTCATGCACTGACGATCCCTGGT 1386
|||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1739 CTTGCAGGTGGTCTAAATGTTGCAAACACCGAAACAGCTCATGCAGTGACGATCCCTGGT 1798
Query 1387 CGAAGAACTGGACAGGAGATAGTTCAGCGAGATGGTTGGGTGACTGTTGTGCGCCAAAAC 1446
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1799 GGAAGAACAGGACAGGAGATAGTTCAGAGAGATGGTTGGGTGACTGTTGTGCGCCAAAAC 1858
Query 1447 CAGGTTTTAAAAGTTGATATGCAGAAAATGAGGTCACGGGTTGGAGAATTAGAAGAGGAG 1506
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1859 CAGGTTTTGAAAGTTGATATGCAGAAAATGAGGTCAAGGGTTGGAGAACTAGAAGAGGAG 1918
Query 1507 TTTCAGAGTATCAAGCAGGAGATGAAGAAGAGAGTGAGCAAGTCCTCTAGCTCAATGGGC 1566
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 1919 TTTCAGAGTATTAAGCAGGAGATGAAGAAGAGAGTTAGTAAGTCCTCTAGCTCAATGAGC 1978
Query 1567 TCGCCTCGTCTGGTCAAGCTCGGCTGTAAGTTTCTTCTTCCACGAGCCTCTGATGCCAAG 1626
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1979 TCGCCTCGTCTGGTCAAGCTCGGCTGTAAGTTTCTTCTTCCACGAGCTTCTGATGCTAAG 2038
Query 1627 AATGATACAGTCCAGAACTCAGTGTCCAGCACTCCTAGATCTGCTGCCGCTGACCACGCA 1686
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 2039 AATGATACAGTCCAGAACTCAGTGTCCAGCACTCCTAGATCAGCTACCGCTGACCATACA 2098
Query 1687 CTCCCTCGTTCCTCCCGCCATTCCAAACACCGCAAAAGCTTCTCCTTT-TTCGGATAA 1743
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 2099 CTCCCTCGTTCCTCCCGCCATTCCAAACACCGTAAAAGCTTCTC-TTTCTTCGGATAA 2155
Score = 176 bits (95), Expect = 6e-43
Identities = 103/107 (96%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 914 GAATGCAGTTGGAGCTCGCAACGCTCGAGAATCTTCTGATTCTGAACTATTCTGATTCAG 973
|||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1221 GAATGCAGTTGGAGCTAGCAACGCTCGATAATCTTCTGATTTTGAACTATTCTGATTCAG 1280
Query 974 AGACGTTGTACAATGTAGATTGTGTAGAACGAATAGTCCGTCATTTT 1020
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1281 AGACGTTGTACAATGTAGATTGTGTAGAACGAATAGTCCGCCATTTT 1327
Score = 97.1 bits (52), Expect = 5e-19
Identities = 52/52 (100%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1 ATGTCACCTGTTGCTAAAGTCTCTGAGTTTCACAGAGAAGGGAACGATTGGT 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 ATGTCACCTGTTGCTAAAGTCTCTGAGTTTCACAGAGAAGGGAACGATTGGT 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5