BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484888
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44890.1 | Symbols: RPL9 | ribosomal protein L9 | chr3:16386... 1123 0.0
> AT3G44890.1 | Symbols: RPL9 | ribosomal protein L9 | chr3:16386434-16388466
FORWARD LENGTH=920
Length=920
Score = 1123 bits (608), Expect = 0.0
Identities = 815/906 (90%), Gaps = 50/906 (6%)
Strand=Plus/Plus
Query 1 ACTAAAACTGTGCGCTC---TTATCTCTGCTTTGAACTGAACTCAGCATTT-GCAATGGC 56
|||| |||||||||||| |||||||||||||||| |||| ||||| ||| || |||||
Sbjct 18 ACTACAACTGTGCGCTCTTGTTATCTCTGCTTTGAAGTGAAATCAGC-TTTGGCTATGGC 76
Query 57 TTCTTCTACAGCTTTGTCTCTCTCATGGAGTTCCTCTCCTTGTTGGTCACACAGCTTCAA 116
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 77 TTCTTCGACAGCTTTGTCTCTCTCATGGAGCTCCTCTCCTTGTTGGTCACACAGCTTCAA 136
Query 117 TGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTC 196
Query 177 CCAGAAGAAAGCTAAGAAACTTCGAAAGGTAATCTTGAAAGAGGATGTGACGGATTTGGG 236
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 197 CCAGAAGAAAGCTAAGAAACTTCGCAAGGTAATTTTGAAAGAGGATGTGACGGATTTGGG 256
Query 237 TAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTTTTGCCTAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 257 TAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTCTTGCCTAC 316
Query 297 GGGAAAGGCTCAGCTTATGACTCCTCTTCTGCTCAAGGAATTGAAGATGGAAGAAGAACG 356
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 317 TGGAAAGGCTCAGCTTATGACTCCACTTCTGCTCAAGGAATTGAAGATGGAAGACGAACG 376
Query 357 GATAGAGGCAGAAAAGCAAAGGGTGAAAGAAGAAGCACAACAACTGGCAATGGTATTTGA 416
||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 377 GATTGAGGCAGAGAAGCAAAGGGTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCA 436
Query 417 GACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGTGGTAAAGGCAAACTGATATTTGGATC 476
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 437 AACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC 496
Query 477 TGTCACAGCACAAGACCTCGTCGACATCATCAAAGCGCAGCTTCAAAGAG-ACATAGACA 535
||||||||| |||||||||||||||||||||||| | ||||| |||| || |||| ||||
Sbjct 497 TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAA-AGGACATCGACA 555
Query 536 AACGCCTTGTCTCTCTCCCGGAAATACGTGAAACAGGAGAATACATAGCCGAACTCAAGC 595
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 556 AACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGAATACATAGCCGAACTCAAGC 615
Query 596 TTCATCCCGATGTCACAGCTCGAGTTAGGATCAACGTTTTCGCCAACTAACCCTTCAATG 655
|||| ||||||||||| |||||||||| |||||| |||||||| |||||| ||||||| |
Sbjct 616 TTCACCCCGATGTCACTGCTCGAGTTAAGATCAATGTTTTCGCTAACTAAACCTTCAACG 675
Query 656 ATTCAAGACTCCTACTGCATCCCAAGAAACGCAGATAGAGAGGGAAAAGAGAGTCGTCTC 715
|||||||||||||||||||||||||| |||| | ||||||||||||||||||| | |||
Sbjct 676 ATTCAAGACTCCTACTGCATCCCAAGGAACGTA--TAGAGAGGGAAAAGAGAGTAGCCTC 733
Query 716 TTG-----AGG-TTG----T-G--AAGTTTTTTCTTGTAGATC-TTTGATGCATTTGTAT 761
||| ||| ||| | | |||||||| ||| ||||| ||||||||||||||||
Sbjct 734 TTGTGGTGAGGATTGAAGGTTGTGAAGTTTTTCCTT-TAGATTGTTTGATGCATTTGTAT 792
Query 762 TTTTGCTTATTTTTG-AATCTGGAAAC---AA--GT-TA-T-T--------A--T-AT-- 799
||||||| ||||||| ||||||||||| || || || | | | | ||
Sbjct 793 TTTTGCT-ATTTTTGGAATCTGGAAACGCTAAAAGTATAATATTCTCTTGCAAGTTATGA 851
Query 800 T-TT--CTTGAAGTTATATTGTATTCATTTGTCTGTTGAAGTGATGAGAATGCTTAAATT 856
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TATTTACTTGAAGTTATATTGTATTCATTTGTCTGTTGAAGTGATGAGAATGCTTAAATT 911
Query 857 AACACT 862
||||||
Sbjct 912 AACACT 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5