BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484892
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44940.1 | Symbols: | Protein of unknown function (DUF1635)... 1587 0.0
> AT3G44940.1 | Symbols: | Protein of unknown function (DUF1635)
| chr3:16413334-16415266 REVERSE LENGTH=1412
Length=1412
Score = 1587 bits (859), Expect = 0.0
Identities = 1094/1198 (91%), Gaps = 53/1198 (4%)
Strand=Plus/Plus
Query 71 ATCATGGACCAAAGCAATGCTCTTCTTAGCTGGACTTACTTCTCTCATGGAAAGACAACG 130
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATCATGGACCAAAGCAATTCTCTTCTTAGCTGGACTTACTTCTCTCATGGAAAGACAACG 189
Query 131 GAAGAGCTAAGACAGACTCTTGTGTACACAACAATGGAGCTAGAACAAACAAAGCTGGTG 190
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 190 GAAGAGCTAAGACAGACTCTCGTGTACACAACAATGGAGTTAGAACAAACAAAGCTTGTG 249
Query 191 GCTCAAGAGGAACTAAGGAAGAGAGATGAACAATTGATCCATCTAGAAGATGTTTTAACC 250
||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 250 GCTCACGAGGAGCTAAGGAAGAGAGATGAACAACTGATCCACCTAGAAGATGTTTTAACC 309
Query 251 AAAACCCTCAAAGAAAGAGACGAAGCTCTAGAGAAATGTCATCATCTCCTCCTAAACAGT 310
||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| | |
Sbjct 310 AAAACCCTCAAAGAAAGAGACGAAGCTCTAGAGAAATATAATCATCTCCTCTTAAATAAT 369
Query 311 CTCTTACTTCAACAGAAACAGCAACAGAATCAGAA--A----CAAGAACTTATCACTCCT 364
||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||
Sbjct 370 CTCTTACTTCAACAGAAGCAGCAACAGAATCAGAATCAGAAACAAGAACTTGTCACTCCT 429
Query 365 CCTTTATCAGGAGCTTCAAGCATTATTGAAGACGAGCAAGTACAGCCACAGCAGCCGCAG 424
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 430 CCTTTATCAGGAGCTTCAAGTATTATTGAAGACGAGCAAGTTCAGCCACAGCAGCCGCAG 489
Query 425 CTTAACTCAAACAAGAGCTTTTCATCTTCAGACACCGAAGAAAGCATCATGTCACCATCA 484
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 490 CTTAACTCAAACAAGAGCTTTTCGTCTTCAGACACTGAAGAAAGCATCATGTCACCATCA 549
Query 485 GTGATTGATCCGGTGACGATGAACCAACAGATTGAAGTCTCAGGAGATGAGTTGATGGCT 544
||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 550 GTGATTGATCCAGTGACGATGAACCAACAGATTGAAGTCTCAGGAGATGAGATGTTGGCT 609
Query 545 ACATTGTTGCCTGA-AAAGCCACTGCCTGAAAAGGGAAAACTCTTACAAGCTGTTATCAA 603
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 610 ACATTGTTGCCTGACAAA-CCACTGCCTGAAAAGGGAAAACTCTTACAAGCTGTTATCAA 668
Query 604 GGCAGGTCCTTTGCTTCAAACACTTCTCGTAGCCGGTCCTCTGCCTCAATGGCGCCACCC 663
|||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 669 GGCAGGTCCTTTGCTTCAGACACTTCTCTTAGCTGGTCCTCTGCCTCAATGGCGCCACCC 728
Query 664 ACCGCCTCCACTCGAGACCTCCGAGATTCCTCCTGTCACCATCCCACCACTTCAGTTTCT 723
|||||||||||| |||||||| ||||| |||||||||||||| |||| || ||||||||
Sbjct 729 ACCGCCTCCACTTGAGACCTCTGAGATCCCTCCTGTCACCATTCCACTACCTCAGTTTCA 788
Query 724 GAACAATGGTTGTGGGAACTCCAACAAGAAAAGGGCATTCTCAATCACAGATGAAACTTA 783
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 789 GAACAATGGCTGTGGGAACTCCAACAAGAAAAGGGCATTCTCAATCTCAGATGAAACTTA 848
Query 784 TTCAGAGACTAAGTATCAGAAACTTCTTCTCCATTAACCTGCTACTGATCTTTG-ATCCT 842
|||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 849 TTCAGAGACTAAGTATCAGAAAGTTCTTCTCCATTAACCGGCTACTGATCTTTTTATCCT 908
Query 843 TACTCAACAAAATACTAATATATAGTCTTTC-------C-AATATAC----CA-TTTTCA 889
||||||||||||||||||||||||||||||| | ||||||| || ||||||
Sbjct 909 TACTCAACAAAATACTAATATATAGTCTTTCTAATATACCAATATACAGATCACTTTTCA 968
Query 890 GTATTAATCTCACTTAGGGTACTAGTGAGAGTGATCTTTTTAGTCAGTTT-TCTGTAGAT 948
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 969 GTATTAATCTCACTTAGGGTACTAGTGAGAGTGATCTTTTTAGTCAGTTTGT-TGTAGAT 1027
Query 949 AGAGCTTGATTTAAAGTTGTGGAGAGTGAATCTGATCCATTTAGGGTTTAGATTTAGAGA 1008
|||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1028 AGAGCTTGATTTGAATTTGTGGAGAGTGAATCTGATCCATTTAGGGTTTAGATCTAGAGA 1087
Query 1009 GTGATGGGAATGAAACTCCCCCTGGTTTAACTCATACTCAAACATGAGt-tttttt--ac 1065
||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||
Sbjct 1088 GTGATGGGAATGAAACTCCCC-TGGTTTAACTCATACTCGAACATGAGTGTTTTTTTTAC 1146
Query 1066 caagtgagagagttttactatttacttttcttttgtt-t--tt-t-g-ttt-t------- 1111
|||||||||||||||| |||||| ||||||||||||| | || | | ||| |
Sbjct 1147 CAAGTGAGAGAGTTTTGCTATTTGCTTTTCTTTTGTTGTGCTTATTGATTTCTTGTTTTG 1206
Query 1112 ---C-TAAACCCAATGTCACATTCATGTTTTGGCTCCATGAATGTAAAACTG-TTGGAGT 1166
| |||||||||| | |||||||||||||||||||||||||||||| || |||| ||
Sbjct 1207 TTTCCTAAACCCAATTTTACATTCATGTTTTGGCTCCATGAATGTAAA-CTTATTGGGGT 1265
Query 1167 GTTTTGTCTTTCtttt-tt--t--GTAATCCATTTTCACCTTGGTGTAAAATAGTAAA 1219
||||||| ||| |||| || | |||||||| |||||||||||||||||||| ||||
Sbjct 1266 GTTTTGTGTTTTTTTTCTTCCTTTGTAATCCAATTTCACCTTGGTGTAAAATACTAAA 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59889250185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5