BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484893
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44990.1 | Symbols: XTR8, ATXTR8, XTH31 | xyloglucan endo-tr... 1838 0.0
> AT3G44990.1 | Symbols: XTR8, ATXTR8, XTH31 | xyloglucan endo-transglycosylase-related
8 | chr3:16446975-16448764 REVERSE
LENGTH=1273
Length=1273
Score = 1838 bits (995), Expect = 0.0
Identities = 1198/1290 (93%), Gaps = 38/1290 (3%)
Strand=Plus/Plus
Query 1 ATTCATTTCATACATATTTGTCTCTCTTAAATGTGTTTATTCCCCCTTTTGTAGTAACCA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATTCATTTCATACATATTTGTCTCTCTTAAATGTGTTTATTTCCCCTTTTGTAGTAACCA 60
Query 61 CTCAAAAGGCTTTAGTTCACTTTAGAAATGGCTTTGTCTCTTATCTTTCTAGCTCTCTTG 120
||||||||| |||| ||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 61 CTCAAAAGGTTTTACTTCAC-TCAAAAATGGCTTTGTCTCTTATCTTTCTAGCTCTCTTA 119
Query 121 GTGTTGTGCCCTAGTAGTGGTCACAGCCAGGGTTCTCCTTCACCCGGATACTACCCGAGT 180
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 120 GTGTTGTGCCCTAGTAGTGGTCACAGCCAACGTTCTCCTTCACCGGGATACTACCCGAGT 179
Query 181 TCCCGAGTAGCGACTTCATCTTTTGATCGTGAATTCCGTACTTTATGGGGCTCTCAACAC 240
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCCGAGTACCGACTTCACCTTTTGATCGTGAATTCCGTACTTTATGGGGCTCTCAACAC 239
Query 241 CAACGTAGAGAGCAAGACGTTATCACTCTTTGGCTCGACAAATCCACTGGGAGTGGGTTC 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAACGTAGAGAGCAAGACGTTGTCACTCTTTGGCTCGACAAATCCACTGGGAGTGGGTTC 299
Query 301 AAGTCTCTTCGTCCATACCGGTCGGGCTACTTTGGTGCTTCCATTAAGCTCCAACCAGGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAGTCTCTTCGTCCATACCGGTCGGGCTACTTTGGTGCTTCCATTAAGCTCCAACCAGGC 359
Query 361 TTCACGGCTGGAGTTGATACATCCCTCTACCTCTCAAACAACCAAGAGCATCCTGGAGAC 420
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 TTCACTGCTGGAGTGGATACATCCCTCTATCTCTCAAACAACCAAGAGCATCCTGGAGAC 419
Query 421 CACGACGAGGTTGATATCGAGTTTCTAGGGACGACGCCAGGGAAGCCTTATTCTCTTCAA 480
||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 420 CACGATGAGGTCGATATCGAGTTTCTAGGGACAACGCCAGGGAAGCCTTATTCCCTTCAA 479
Query 481 ACGAATGTATTCGCTAGAGGAAGTGGCGACCGAAATGTCATTGGAAGAGAAATGAAATTT 540
|||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACGAATGTCTTCGTTAGGGGAAGTGGCGACCGAAATGTCATTGGAAGAGAAATGAAATTT 539
Query 541 ACCTTGTGGTTTGACCCTACTCAAGATTTTCACCATTACGCAATTTTGTGGAATCCTAAC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 ACCTTGTGGTTTGACCCTACTCAAGATTTTCACCATTACGCAATTTTGTGGAACCCTAAC 599
Query 601 GAAATTGTATTCTTCGTAGACGATATACCGATACGTACATATAATAGAAAGAATGAAGCT 660
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 CAAATTGTATTCTTTGTAGACGATGTACCGATACGTACATATAATAGAAAGAATGAAGCT 659
Query 661 ACGTTCCCCACTAGACCGATGTGGGTGTATGGATCTATATGGGATGCATCGGACTGGGCC 720
| |||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 660 ATATTCCCCACAAGACCGATGTGGGTTTACGGATCGATATGGGATGCATCGGACTGGGCC 719
Query 721 ACGGAAAATGGAAGGATTAAAGCCGACTATCGGTACCAACCATTTGTGGCTAAGTACAAA 780
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 ACAGAAAATGGAAGGATCAAAGCCGACTATCGATACCAACCATTTGTGGCTAAGTACAAA 779
Query 781 AACTTTAAGCTAGCCGGATGCACAGCGGATAGCTCTAGCTCATGCAGACCGCCATCGCCT 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACTTTAAGCTAGCGGGATGCACAGCGGATAGCTCTAGCTCATGCAGACCGCCATCGCCT 839
Query 841 GCACCAATCCTTAACCAAGGGTTGAGCCGGCAGCAGATGGCGGCATTGGCATGGGCACAG 900
||||| || | |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 GCACCCATGCGCAACCGCGGGTTGAGCCGGCAGCAGATGGCGGCATTGACATGGGCACAG 899
Query 901 AGGAACTTCTTGGTCTATAACTATTGCCATGACCCGAAAAGAGACCATACCCAAACACCA 960
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 900 AGGAACTTCTTGGTCTATAACTATTGCCATGATCCGAAAAGAGACCATACCCAAACACCA 959
Query 961 GAATGCTAAAACAAACAAACAAA-------TT-T--TA-TTTT-----GAATTATAAAAC 1004
||||| ||||||||||||||||| || | || |||| | ||||| ||||
Sbjct 960 GAATGTTAAAACAAACAAACAAAAGAAAGGTTATAATAATTTTATTTTGCATTATCAAAC 1019
Query 1005 ATACATTTAAGTTAATAATGGGAGGTCTTGTGACGGGTCCACACTGGAAACTAAATTGAA 1064
|||||| || | ||| ||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 ATACATG-AA-T-AAT--TGG-AGGTCTTGTGACGGGTCCACACTGGAAACTATATTGAA 1073
Query 1065 GCAGTTGAGCGTCCGGTCCTCTATGATTTGAGATTAAAACGAAAAAGGTTTTGttttttt 1124
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1074 GCAGTTGAGCGTCCGGTCCTCTATGATTTGAGATTAAAAAGAAAA-GGTTTTGTTTTT-- 1130
Query 1125 CAATACTTTGTAATGTT-CCATTTCGTATATTTCTTATAATTGTTGCAATATTGTGTGAT 1183
||||||||||||||||| |||||| |||| |||||||||||||| |||||||||||||
Sbjct 1131 CAATACTTTGTAATGTTTCCATTTGGTATCTTTCTTATAATTGT---AATATTGTGTGAT 1187
Query 1184 CACatatatatatatatatatGGTATTGTATTGTTGTGTGAACCaaaaaagaaa-aagaa 1242
||||||||| || |||| | ||||||||||||||||||||||||||||||||| || ||
Sbjct 1188 CACATATAT-TA-ATATCT--GGTATTGTATTGTTGTGTGAACCAAAAAAGAAAGAAAAA 1243
Query 1243 -a--GGAAGTTGTTCTTTCGAAGGTGGCTT 1269
| ||||||||||||||||||||||||||
Sbjct 1244 GAATGGAAGTTGTTCTTTCGAAGGTGGCTT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5