BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484896

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein | c...   658    0.0  


> AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein | 
chr3:16468961-16470153 REVERSE LENGTH=687
Length=687

 Score =  658 bits (356),  Expect = 0.0
 Identities = 417/447 (93%), Gaps = 1/447 (0%)
 Strand=Plus/Plus

Query  8    AAGCAAATGACAGTTTTGAAAAGGTATGTATTGAGGTTGTTCATGTCGATCAAGTACATA  67
            |||||||||||||||||||||||||| || || ||| |||||||||||||||||||||||
Sbjct  74   AAGCAAATGACAGTTTTGAAAAGGTACGTCTTAAGGCTGTTCATGTCGATCAAGTACATA  133

Query  68   ACAGCAAACGTAGTGGACAGAAACAACGGGAGAATAGTGACTACGGCTTCAACTGTAGAG  127
            ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct  134  ACAGCAAACGTAGTGGACAGAAACAACGGGAGAATAGTGACGACAGCTTCAACCGTAGAG  193

Query  128  CACGCGATCAAGAACTCACTGGAGTGTGGTCGTACTTGCAATGCTAAGGCAGCGGCTATT  187
            ||| ||||||||||||| || |||||||| |||||||||||||||||||| |||||||| 
Sbjct  194  CACACGATCAAGAACTCCCTAGAGTGTGGCCGTACTTGCAATGCTAAGGCGGCGGCTATC  253

Query  188  GTAGGAGAGGTTTTAGCGATGAGGCTGAAAGTGGAAGGGCTTCAAGATGGGCAAGGAAGA  247
            ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct  254  GTAGGAGAGGTTTTAGCAATGAGGCTGAAAGTGGAAGGGCTTCAGGATGGGCAAGGAAGA  313

Query  248  GGTATCCATGCCGATGTTAAGAAAGAAATCGAAAAGAAAGGGTTTAAGAGTCGAACCAAG  307
            || || ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  314  GGAATACATGCTGATGTCAAGAAAGAAATCGAAAAGAAAGGGTTTAAGAGTCGAACTAAG  373

Query  308  GTATGGGCTGTTATTAATTCTCTTAGAAACAATGGTGTTACTCTCATTTTTGACgatgat  367
            ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct  374  GTATGGGCTGTTATTAACTCTCTTAGAAACAATGGTGTTACACTCATTCTTGACGATGAT  433

Query  368  gatgatgatgatgaGTATCGTGATCGTTCTTATGAGGGTCATCAGTGAATTTGCAAGCTT  427
            ||||||||||||||||||||||||||||||| ||||||||||| |||||||  ||| |||
Sbjct  434  GATGATGATGATGAGTATCGTGATCGTTCTTTTGAGGGTCATCGGTGAATTCACAATCTT  493

Query  428  TGTTTTT-ATGTGTCATCTTCTCTAGT  453
            ||||||| |||||| ||||||||||||
Sbjct  494  TGTTTTTTATGTGTTATCTTCTCTAGT  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5