BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484897
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45040.1 | Symbols: | phosphatidate cytidylyltransferase fa... 2900 0.0
> AT3G45040.1 | Symbols: | phosphatidate cytidylyltransferase
family protein | chr3:16472662-16475753 REVERSE LENGTH=1900
Length=1900
Score = 2900 bits (1570), Expect = 0.0
Identities = 1760/1854 (95%), Gaps = 3/1854 (0%)
Strand=Plus/Plus
Query 1 TAAAACAACAAATCTCCGGCGAAATCATCATCATCTCCGGCGATGAAGACGACGGCGACG 60
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 10 TAAAACAACGAATCTCCGGCGAAATCATCATCTTCTCCGGCGATGAAGACGACGGCGACG 69
Query 61 TCGTTTGTAACAGGAGAGAGAGTTGTAG-TAGCAGTCGTGGTTtctcgtattctcttatc 119
||||||||||| |||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 70 TCGTTTGTAACGGGAGAGAGAGTTGTAGTTTTC-GTCGTGGTTTCTCGTATTCTCTTATC 128
Query 120 tctccctctatcacttatctcccatggcttctccctcttcctcctctctctctccgcctt 179
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TCTTCCTTTATCACTTATCTCCCATGGCTTCTCCCTCTTCCTCCTCTCTCTCTCCGCCTT 188
Query 180 cctcatcgagatccgcgccgagacttctccgtttcttctctctcGTTTCAGCTCCAGACG 239
|||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 189 CCTCGTCGAGATCCGCGTCGAGACTTCTCCGTTTCTTCTCTCTCATTTCAGCTCCAGACG 248
Query 240 TGGTGCTTCTTCAGGGATATTATTAGGAGCTGTAACACTTCCTTCTGTTATGATTTCTAA 299
||||| ||||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 249 CGGTGCGTCTTCAGGGATATTACTAGGAGCTGTGACACTTCCTTCTGTTATGATATCTAA 308
Query 300 GTTGGTTCAGCTTTCAAGAGCTATCTCAATCCATGAAGCTGAACAAGATGAGCTTGCACA 359
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 309 GTTAGTTCAGCTTTCAAGAGCTATTTCAATCCATGAAGCTGAACAAGATGAGCTTGCACA 368
Query 360 TGTGACAATGCAGTATTGGGCAGCATCGGCTAGTTGTTGTGCTATACTTATATATCTATC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TGTGACAATGCAGTATTGGGCAGCATCGGCTAGTTGTTGTGCTATACTTATATATCTATC 428
Query 420 AGTGATTATGTCACAAGCGAGAAATGCTGAATCTTTGTCATCGTCGTCTGTTTGGCTTAT 479
||||||||||||||||| |||||| | |||||||||||| || |||||| |||||||||
Sbjct 429 AGTGATTATGTCACAAGTGAGAAAAGATGAATCTTTGTCGTCATCGTCTATTTGGCTTAC 488
Query 480 GAGAGTTAGCTTGACTGGGACAGTGTTGTATGGAGTAGCATGTTTTGTCTCACTTTCCAT 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 489 GAGAGTTAGCTTGACTGGGACAGTGTTGTATGGAGTAGCATGTTTTGTTTCACTTTCCAT 548
Query 540 GATTTCACACACTGGTTTGAATACTTCATTGAAAATGTTGTGGATGTTATTTCACGGCCT 599
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 549 GATTTCACACACTGGCTTGAATACGTCATTGAAAATGTTGTGGATGTTATTTCATGGACT 608
Query 600 TGCAGCTTTGAAGTTAATTCAACATTTGCTTTGCACCTTCCCTTCTTGTGCTTCAATCGG 659
||||||| ||||||| |||| ||||||||||||||| ||||| || |||||||| || ||
Sbjct 609 TGCAGCTGTGAAGTTGATTCGACATTTGCTTTGCACTTTCCCATCGTGTGCTTCGATAGG 668
Query 660 GGAAGCGCTTCTTGTGACTAGTGGTCTTGTTCTATATTTTGGCGACTTTTTGGCATGCAC 719
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 669 GGAAGCACTTCTTGTGACCAGTGGTCTTGTTCTCTATTTTGGCGACTTTTTGGCATGCAC 728
Query 720 AATTGCAAAGATTTTCGAGAAATTGATACCTGTAGATCTTGTCTCAATAAGCTATGGAAT 779
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 729 AATTGCAAAGATTTTTGAGAAATTGATACCTGTGGATCTTGTCTCAATAAGCTATGGAAT 788
Query 780 AAGGAGGACTGAAACCGGCATAATCGTCCAGGGTCTGCTGTTGGGCCTTCTACTTTTCCC 839
|| ||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 789 AAAGAGAACGGAAACCGGCATAATCGTTCAGGGTCTACTGTTGGGCCTTCTACTTTTCCC 848
Query 840 GATAGTGTTCAGAATCGTTCTGCATATATATGAAAGCTCCTTGAGAAAGAGAGATGCTCG 899
||| ||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 849 GATGGTGTTTAGATTTGTTCTGCATATATATGAAAGCTCTTTGAGAAAGAGAGATGCTCG 908
Query 900 ACAAAGAAACTGCAGTGATACTGCAAAATCTATCTTATTCTTTGTTTCACTTCTATTTTT 959
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 909 ACAAAGAAACTGCAGTGATGCTGCAAAATCTGTCTTATTCTTTGTTTCACTTCTATTTTT 968
Query 960 TATGATCGTGACTGTTCCTTCTTGGATGCAGTTTGTACACGATTTCGACCAGCATCCCTT 1019
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 969 TATGGTCGTGGCTGTTCCTTCTTGGATGCAGTTTGTACACGATTTCAACCAGCATCCCTT 1028
Query 1020 CTTATGGGTACTCACATTTGTCTTTTCTGAACCTCTGAAGAGACTTTCATTATGTATCTA 1079
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CTTATGGGTGCTCACATTTGTCTTTTCTGAACCTCTGAAGAGACTTTCATTATGTATCTA 1088
Query 1080 CTGGGTTCTGTTGATCGTTGTGTCTGTCTCACGATTTTATAACATCTCGAGGAGTAGCAA 1139
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 CTGGATTCTGTTGATCGTTGTGTCTGTCTCACGATTTTATAACATCTCGAGGAGTAGCAA 1148
Query 1140 GGTTGAGAGAATCTTGCTTCGGAAGTACTACCATCTGATGGCTGTTTTAATGTTTTTGCC 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1149 GGTTGAGAGAATCTTGCTTCGGAAGTACTACCATCTGATGGCTGTTTTAATGTTCTTGCC 1208
Query 1200 AGCTCTTGTGTTACAGCCTAAATTTCTCGATCTAGCATTTGGTGCTGCATTGGCGGTATT 1259
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1209 AGCTCTTGTCTTACAGCCTAAATTTCTCGATCTAGCATTTGGTGCAGCATTGGCAGTATT 1268
Query 1260 TGTTGTATTGGAGATCATTCGAATCTGGAGAATTCAGCCGCTTGGAGAGCCTTTACATCA 1319
||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1269 TGTTGCATTGGAGATCATTCGAATATGGAGAATTCAGCCTCTTGGAGAGCCTTTACATCA 1328
Query 1320 ATTCATGAATGCTTTCACGGACCATCGTGACTCAGAGCATCTGATTGTCAGCCACTTCTC 1379
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 ATTCATGAATGCTTTCACTGACCATCGTGACTCAGAGCATCTGATTGTCAGCCACTTCTC 1388
Query 1380 ACTCTTGCTTGGGTGTGCGCTTCCAATTTGGATGTCATCTGGGTTCAATGACCGAGCTTT 1439
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1389 ACTCTTGCTTGGGTGTGCGCTTCCGATTTGGATGTCATCTGGGTTCAATGACCGAGCCTT 1448
Query 1440 ATCCCCATTTGCCGGAATTCTCAGCCTCGGGATTGGAGATACAATGGCATCGATGGTTGG 1499
||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1449 ATCTCCATTTGCTGGAATTCTCAGCCTAGGAATTGGAGATACAATGGCATCGATGGTTGG 1508
Query 1500 GCACAAGTATGGGGTGTTGAGATGGAGCAAGACAGGAAAGAAAACGGTTGAAGGAACAGC 1559
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 TCACAAATATGGGGTGTTGAGATGGAGCAAGACAGGAAAGAAAACGGTTGAAGGAACAGC 1568
Query 1560 AGCGGGAATAACATCGGTGATGGCAGTGTGCTTTGTACTGGTCCCAGTATTAGCATCAAT 1619
|||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1569 AGCGGGAATAACATCGATGATGGCAGTGTGCTTTGTTCTGGTCCCAATATTAGCATCAAT 1628
Query 1620 GGGTTATATACTAAGTCAAGGATGGTGGTCGCTTCTGGTTGCTGTGACAGCCACCGGGAT 1679
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1629 GGGTTATATACTAAGTCAAGGATGGTGGTCGCTTCTGGTGGCTGTGACAGCCACCGGGAT 1688
Query 1680 GTTGGAAGCTTACACCGCACAGTTAGACAATGCCTTTATACCTCTTGTCTACTACTCACT 1739
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1689 GTTGGAAGCTTACACGGCGCAGTTAGACAATGCCTTTATACCTCTTGTCTTCTACTCACT 1748
Query 1740 CCTCTGTTTGTAG-TAAGTTAAGCCTAGAGTCATCATTCTTCGTTTTTCCACTTAATGTA 1798
|||||| ||||| | ||||||||||||||||| |||||| ||||||| ||||| |||||
Sbjct 1749 CCTCTGCTTGTAAATTAGTTAAGCCTAGAGTCAACATTCTACGTTTTTTCACTTCATGTA 1808
Query 1799 CATAACAAAGTATCTTACTACTAACCACACTTCCTCTTGTTAATTGCCATATCT 1852
||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1809 CATAACAAAGTATCTTACTACTAACCATACTTCCTCTTGTTAATTGCCGTATCT 1862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91716395715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5