BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484900
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45050.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 621 3e-177
> AT3G45050.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to
28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa
- 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:16475966-16477524 FORWARD
LENGTH=817
Length=817
Score = 621 bits (336), Expect = 3e-177
Identities = 553/651 (85%), Gaps = 41/651 (6%)
Strand=Plus/Plus
Query 164 GAGATCATTAACAG-TGACTCCTGCTTTAGCTGAAACAGCTGTTTCTATAGTGATTGCAG 222
|||||||| ||| | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 171 GAGATCATCAACTGTTG-TTCCTGCTTTAGCTGAAACAGCTGTTTCTATAGCGATTGCAG 229
Query 223 CCACGGTTGTTGGTACTGCAGCTACTATCCTTG-CACGGAGAAGTTCCAAAGCCGCTGAA 281
|||||||||||||||||||||||||||| |||| | |||||| | ||||||| | |||
Sbjct 230 CCACGGTTGTTGGTACTGCAGCTACTATTCTTGTTA-GGAGAAATAACAAAGCCTCCGAA 288
Query 282 GAAGCCGAGGCTTCTATGAAAGAATGTGAAGCTTGTCTCGGTTCAGGAATCTGTCCTGAA 341
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 289 GAAGCCGAGGCTTCTATGAAAGAATGTGAAGCTTGTCTCGGTTCAGGAATATGTCCTGAA 348
Query 342 TGCAAAGGTGAAGGATTTGTACTAAAGAAACTATCAGATGCTAATGCTGAGAAAGCAAGA 401
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 349 TGCAAAGGTGAAGGATTTGTATTAAAGAAACTATCAGATGCAAATGCTGAGAAAGCAAGA 408
Query 402 CTTACAGCCAAAAATATGGCCACGCGATATACAGCCGGGCTTCCCAAGAAATGGAGCTAC 461
||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CTTGCAGCTAAAAACATGGCCACGCGATATACAGCCGGGCTTCCCAAGAAATGGAGCTAT 468
Query 462 TGCACAAAATGTTCGTCCAC-ACGATCTTGTATAACATGTGGTGGGAGTGGAAAGACAAG 520
||||| |||||||| ||||| | |||||||||| | ||||||||| ||||||||||||||
Sbjct 469 TGCACTAAATGTTCTTCCACGA-GATCTTGTATGATATGTGGTGGTAGTGGAAAGACAAG 527
Query 521 CATCTAGCACCTTACGCAGGGTACACAAGTAC---AAATTCTTTAATGC-GATAT-GTTT 575
|||||||| |||||||||| || |||||||| ||| ||||| | | || | | ||
Sbjct 528 CATCTAGCTCCTTACGCAGAGTTTACAAGTACGTTAAACTCTTTTCTTCAGAAACCGATT 587
Query 576 CTTAGA--CGTAAA-G--AT-TA---CTAA-A-GTCAAT-TT-CTTCT-TCTAAAGGTTT 621
| ||| | | || | || | || | | || || || || || || | ||
Sbjct 588 CAAAGATTCTTTAATGTGATCTGTTTCTGAGACGTAAAGATTACTAAAGTC-AATTGCTT 646
Query 622 CTTCAT--G-TA-GACTAGTTGCGCCTCAAAACACTCGTCTCATTTTCAGTATTTGATCG 677
|||| | | || ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 647 CTTCTTAAGGTATGACTAGTTGTGCCTCAAAACACTCTTCTCATTTTCAGTATTTGATCG 706
Query 678 ATTTCT-TTAAATTAGTAATATGATCTTGGAAGACTTTTAAA--------T-GTTGATAA 727
|||| | |||||| | |||||||||||||||||||||||||| | ||||||||
Sbjct 707 ATTT-TGTTAAATCAATAATATGATCTTGGAAGACTTTTAAAGACACGGCTTGTTGATAA 765
Query 728 AACAGAGAGAAAATTGATGCATAAGCCTTATATCAAACGGCATTTTACATC 778
||||||||||||| ||||||||||| ||||||||||||| |||| ||||||
Sbjct 766 AACAGAGAGAAAACTGATGCATAAGTCTTATATCAAACGACATTGTACATC 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37826312691
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5