BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484901
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45060.1 | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate... 2828 0.0
AT5G60770.1 | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2... 425 6e-118
> AT3G45060.1 | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate
transporter 2.6 | chr3:16477561-16479482 REVERSE LENGTH=1835
Length=1835
Score = 2828 bits (1531), Expect = 0.0
Identities = 1737/1837 (95%), Gaps = 12/1837 (1%)
Strand=Plus/Plus
Query 1 CAAAGGCGACAAAGAAGAAGAAAACCTTCTTCATTGTTTAAAG-------TCTCT-TCTC 52
||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1 CAAAGGCCACAAAGAAGAAGAAAACCTTCTTCAACGTTTAAAGTCTCTTCTCTCTCTCTC 60
Query 53 TCTTAACTTCTCCCATTTTCTTTGAACTAAAGATCAATGGCTCACAACCATTCTAATGAA 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTAACTTCTCCCATTTTCTTTGAACTAAAGATCAATGGCTCACAACCATTCTAATGAA 120
Query 113 GACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCTCCTTC 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACGGCTCTATTGGAACCTCCTTGCATGGAGTCACGGCAAGGGAGCAAGTCTTCTCCTTC 180
Query 173 TCCGTCCACGAAGATGGTCC-TTCGTCTCAAGCCGTCCGATCAGACGATCCAACGGCTAA 231
|||||||| ||||||| ||| ||| ||||||||||||||| || ||||||||||||||||
Sbjct 181 TCCGTCCAAGAAGATG-TCCCTTCATCTCAAGCCGTCCGAACAAACGATCCAACGGCTAA 239
Query 232 GTTCGCCTTACCAGTGGACTCCGAGCATAGGGCAAAAGTGTTCAAACCATTATCATTCGC 291
||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 240 GTTTGCCCTACCAGTGGACTCCGAACATAGGGCAAAAGTGTTCAAACCACTATCATTCGC 299
Query 292 AAAACCACACATGAGAGCTTTCCACTTAGGATGGATCTCTTTCTTCACTTGCTTCATCTC 351
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAAACCACATATGAGAGCCTTCCACTTAGGATGGATCTCTTTCTTCACTTGCTTCATCTC 359
Query 352 CACCTTCGCAGCTGCACCTCTAGTCCCCGTGATCCGCGACAACCTCAACCTGACCAAAAC 411
|||||||||||| ||||||||||||||||| || |||||||| ||| |||||||||||||
Sbjct 360 CACCTTCGCAGCCGCACCTCTAGTCCCCGTCATTCGCGACAATCTCGACCTGACCAAAAC 419
Query 412 CGACATCGGAAATGCCGGAGTAGCATCAGTTTCCGGCGCCATTTTCTCAAGACTAGCTAT 471
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 420 CGACATCGGAAATGCTGGAGTTGCATCAGTTTCCGGCGCCATTTTCTCGAGACTCGCTAT 479
Query 472 GGGTGCCGTATGTGACCTTCTAGGAGCACGTTATGGGACCGCTTTCTCTCTTATGCTTAC 531
|||||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 480 GGGTGCTGTATGTGACCTTCTAGGGGCACGTTATGGAACCGCCTTCTCACTTATGCTTAC 539
Query 532 AGCTCCAGCCGTTTTCTCCATGTCGTTCGTAGCTGATGCGGGAAGTTACTTAGCTGTTCG 591
||||||||| |||||||||||||||||||||||||| |||||||| |||||||| || |
Sbjct 540 AGCTCCAGCAGTTTTCTCCATGTCGTTCGTAGCTGACGCGGGAAGCTACTTAGCCGTAAG 599
Query 592 GTTCATGATCGGTTTTTGCTTAGCAACGTTCGTGTCATGCCAGTACTGGACGAGCGTTAT 651
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 600 GTTCATGATCGGTTTTTGCTTAGCAACGTTCGTATCATGTCAGTACTGGACGAGTGTTAT 659
Query 652 GTTCACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAGGGTGGGGAGACATGGG 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 GTTCACTGGAAAGATTATCGGACTCGTTAACGGATGTGCTGGAGGGTGGGGAGATATGGG 719
Query 712 AGGAGGAGTGACTCAGCTACTCATGCCAATGGTCTTCAACGTCATCAAACTCACCGGAGC 771
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 720 AGGAGGAGTGACTCAGCTACTAATGCCAATGGTCTTCCACGTCATCAAACTCACCGGAGC 779
Query 772 CACTCCCTTCACGGCGTGGAGGTTCGCCTTCTTCATCCCCGGCATTCTTCAGATCA-TTA 830
||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 780 CACTCCCTTCACGGCTTGGAGGTTCGCCTTCTTCATCCCCGGCATTCTTCAGAT-AGTTA 838
Query 831 TGGGTATTCTCGTTCTCACTCTAGGCCAAGATCTTCCCGATGGTAACCTTAGTACTCTCC 890
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 839 TGGGTATTCTCGTTCTCACTCTCGGCCAAGATCTTCCCGATGGTAACCTCAGTACTCTCC 898
Query 891 AAAAGAGTGGTCAAGTTTCCAAAGACAAATTCTCCAAGGTCTTTTGGTTCGCTGTGAAAA 950
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAAAGAGTGGTCAAGTTTCTAAAGACAAATTCTCCAAGGTCTTTTGGTTCGCTGTGAAAA 958
Query 951 ACTACAGAACATGGATCTTATTCATGCTCTATGGATTTTCTATGGGAGTTGAATTAACGA 1010
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACTATAGAACATGGATCTTATTCATGCTCTATGGATTTTCTATGGGAGTTGAATTAACGA 1018
Query 1011 TCAACAACATTATATCTGGATACTTCTACGATAGGTTTAACCTTACGCTTCACACAGCCG 1070
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 TCAACAACGTTATATCTGGATACTTCTACGATAGGTTTAACCTTACGCTTCACACAGCTG 1078
Query 1071 GTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCCTTTGGTGGCTATG 1130
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1079 GTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCTTTTGGTGGCTACG 1138
Query 1131 CCTCAGACGTAGCTGCACGGCTCTTCGGCATGAGAGGCCGGTTATGGATCTTGTGGATCT 1190
| ||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1139 CTTCAGATGTAGCTGCACGGCTCTTCGGTATGAGGGGACGGTTATGGATCTTGTGGATCT 1198
Query 1191 TACAAACTGTTGGAGCTCTCTTTGGCATCTGGCTTGGTCGTGCTAGTTCACTCCCTATAG 1250
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1199 TACAAACTGTTGGAGCTCTCTTTTGCATCTGGCTTGGTCGTGCTAGTTCACTACCTATAG 1258
Query 1251 CTATCTTAGCCATGATGCTCTTTTCCATCGGCACACAAGCGGCTTGTGGAGCTCTCTTTG 1310
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 1259 CTATCTTAGCCATGATGCTTTTTTCCATGGGCACACAAGCTGCTTGTGGAGCTCTCTTTG 1318
Query 1311 GTGTTGCCCCTTTTGTTTCCCGCCGTTCTCTTGGGCTTATCTCTGGATTGACTGGTGCTG 1370
||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1319 GTGTTGCTCCTTTTGTTTCCCGCCGTTCTCTTGGACTTATCTCGGGATTAACTGGTGCTG 1378
Query 1371 GAGGAAATTTTGGGTCGGGTGTTACTCAACTTCTTTTCTTCTCCTCGTCGAGGTTTAGTA 1430
| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1379 GTGGAAATTTTGGGTCGGGAGTTACTCAACTTCTTTTCTTCTCTTCCTCGAGGTTTAGTA 1438
Query 1431 CAGCTGAAGGACTATCATTGATGGGTGTTATGGCTGTTGTGTGTTCCCTTCCGGTTGCGT 1490
| || ||||||||||| |||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1439 CGGCGGAAGGACTATCGTTGATGGGCGTTATGGCTGTTGTGTGCTCTCTTCCGGTTGCGT 1498
Query 1491 TTATACATTTTCCGCAGTGGGGAAGCATGTTCTTGAGGCCATCGCAAGACGGAGAGAAAT 1550
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1499 TTATACATTTTCCGCAGTGGGGAAGCATGTTCTTGAGGCCATCACAAGATGGAGAGAAAT 1558
Query 1551 CAAAGGAGGAGCATTACTATGGAGCGGAATGGACAGAGGAAGAGAAGAGCTTAGGGCTAC 1610
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1559 CAAAGGAAGAGCATTACTATGGAGCGGAATGGACAGAGGAAGAGAAGAGCTTAGGACTAC 1618
Query 1611 ACGAGGGAAGCATTAAGTTTGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGATGT 1670
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ACGAAGGAAGCATTAAATTTGCTGAAAACAGCCGGTCAGAGAGAGGCCGCAAGGCGATGT 1678
Query 1671 TGGCTGATATTCCAACACCGGAGACCGGATCTCCGGCTCATGTCTAGTGAAGGATAGTCA 1730
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1679 TGGCTGATATTCCAACGCCGGAAACCGGATCTCCGGCTCATGTCTAGTGAAGGATAGTCA 1738
Query 1731 CATTACATATTTTTCCACATATAAATAACCATCAAACTTAGCTTTATATTTCCTTGTTTT 1790
|||||||| ||||||||||||||||||||| |||||||||||||||| ||| | ||||||
Sbjct 1739 CATTACATCTTTTTCCACATATAAATAACCCTCAAACTTAGCTTTATGTTTGCATGTTTT 1798
Query 1791 ATGTTCCTCTTATGAAAGATGTACCGAGTTAGATCCT 1827
||||||||||||||| ||||||||||||| |||||||
Sbjct 1799 ATGTTCCTCTTATGAGAGATGTACCGAGTAAGATCCT 1835
> AT5G60770.1 | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter
2.4 | chr5:24444396-24447026 FORWARD LENGTH=1584
Length=1584
Score = 425 bits (230), Expect = 6e-118
Identities = 895/1208 (74%), Gaps = 78/1208 (6%)
Strand=Plus/Plus
Query 245 GTGGACTCCGAGCATAGGGCAAAAGTGTTCAAAC-CATTATCATTCGCAA-AACCACACA 302
|||||| |||| || | || ||||| ||||||| | ||||| || | || ||||| |
Sbjct 127 GTGGACACCGAACACAAAGCCAAAGTCTTCAAACTC-TTATCCTTTG-AAGCTCCACATA 184
Query 303 TGAGAGCTTTCCA-CTTAGGATGGATCTCTTTCTTCACTTGCTTCATCTCCACCTTCGCA 361
||||| ||||||| ||| | |||||||| ||||||||||||||||| ||||| |||||
Sbjct 185 TGAGAACTTTCCATCTT-GCTTGGATCTCATTCTTCACTTGCTTCATTTCCACTTTCGCT 243
Query 362 GCTGCACCTCTAGTCCCCGTGATCCGCGACAACCTCAACCTGACCAAAAC-CGACATCGG 420
||||| ||||| |||||| | || | || ||||| || || | ||| || || ||||
Sbjct 244 GCTGCTCCTCTTGTCCCCATCATTAGAGATAACCTTAATCTCA-CAAGACAAGATGTCGG 302
Query 421 AAATGCCGGAGTAGCATCAGTTTCCGGC-GCCATTTTCTCAAGACTAGCTATGGGTGCCG 479
|||||| || || || || || || ||| | || ||||| || || | |||||| || |
Sbjct 303 AAATGCTGGTGTTGCTTCTGTCTCTGGCAG-TATCTTCTCTAGGCTTGTTATGGGAGCAG 361
Query 480 TATGTGACCTTCTAGGAG-CACGTTATGGGACCGCTTTCTCTC-TTATGCT-TACAGCTC 536
| ||||| || || || | |||||||||| |||||| ||| | ||||| | | ||||
Sbjct 362 TTTGTGATCTCCTTGG-GCCACGTTATGGCTGTGCTTTC-CTCGTCATGCTCT-CTGCTC 418
Query 537 CAGCCGTTTTCTCCATGTCGTTCGTAGCTGATGCGGGAAGTTACTTAGCTGTTCGGTTCA 596
|| |||| ||||||||||| ||||| | || ||| ||| | ||| || | || ||||||
Sbjct 419 CAACCGTCTTCTCCATGTCTTTCGTTGGTGGTGCCGGAGGGTACATAACGGTGAGGTTCA 478
Query 597 TGATCGGTTTTTGCTTAGCAACGTTCGTGTCATGCCAGTACTGGACGAGCGTTATGTTCA 656
||||||| || ||| | || || ||||||||||||||||| |||| |||| |||||||
Sbjct 479 TGATCGGGTTCTGCCTGGCGACTTTCGTGTCATGCCAGTATTGGATGAGCACAATGTTCA 538
Query 657 CTGGAAAGATTATCGGACTCGTTAAC-GGATGTGCTGG-AGGGT-GGGGAGACATGGGAG 713
||| |||| || || || || ||| ||| || || ||||| ||||| ||||||| |
Sbjct 539 ATGGTCAGATCATAGGTCTAGTGAACGGGA-CAGC-GGCAGGGTGGGGGA-ACATGGGCG 595
Query 714 GAGGAGTGACTCAGCTACTCATGCCAATGGTCT-TCAACG-TCATCAAAC--TCACCGGA 769
| || || |||||| | |||||||||||||||| | | | ||||| || | | ||
Sbjct 596 GTGGGGTCACTCAGTTGCTCATGCCAATGGTCTAT-GA-GATCATCCGACGGTTA--GG- 650
Query 770 G-CCAC-TCCCTTCACGGCGTGGAGGTTCGCCTTCTTCATCCCCGGCAT-TCTTCAGATC 826
| |||| | ||||||| || |||||| | || |||||| ||||||| | | || |||
Sbjct 651 GTCCACGT-CCTTCACCGCATGGAGGATGGCTTTCTTCGTCCCCGG-GTGGATGCACATC 708
Query 827 ATTATGGGTATTCTCGTTC-TCACTCTAGGCCAAGATCTTCCC-GATGGTAACCTTAGTA 884
|| ||||| | ||| | || | |||||||| ||||| | |||| |||||||| || |
Sbjct 709 ATCATGGGGA-TCTTGGTCTTGACTCTAGGGCAAGA-CCTCCCTGATGGTAATAGAAGCA 766
Query 885 CTCTCCAAAAGAGTGGT-CAAGTTTCCAAAGACAAATTCTCCAAGGTCTTT-TGGTTCGC 942
| ||| | |||| ||| | |||| | |||||||| ||||| ||||| ||| |||| |||
Sbjct 767 CACTCGAGAAGAAAGGTGC-AGTTACTAAAGACAAGTTCTCAAAGGT-TTTATGGTACGC 824
Query 943 TG-TGAAAAACTACAGAACATGGATCTT-ATTCATGCTCTATGGATTTTCTATGGGAGTT 1000
| | | ||||| || |||||| | || | | |||| ||||||| || ||||||||
Sbjct 825 -GATCACGAACTATAGGACATGGGTTTTCGTGC-TGCTATATGGATACTCCATGGGAGTA 882
Query 1001 GAATTAACGATCAACAACATTATATCTGGA-TACTTCTACGATAGGTTTAACCTTACGCT 1059
|| | || | | | ||| | || || || ||||| | ||| ||||| | |||| |||
Sbjct 883 GAGCTCACAACCGATAACGTCATCGCT-GAGTACTTTTTCGACAGGTTCCATCTTAAGCT 941
Query 1060 TCACACAGCCGGTATTATAGCAGCCAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCCT- 1118
||| || |||||||| || || || |||||||||||||||||||||||||||||||| |
Sbjct 942 TCATACCGCCGGTATAATCGCGGCAAGCTTTGGTATGGCAAACTTCTTTGCCCGTCC-TA 1000
Query 1119 TTGGTGGCTATGCCTCAGACGTAGCTGC-ACGGCTCTTCGGCATGAGAGGCCGGT-TATG 1176
||||||| | |||||||| | || || | | | |||||||||||||||||| | | ||
Sbjct 1001 TTGGTGGTTGGGCCTCAGATATTGCGGCTA-GACGCTTCGGCATGAGAGGCCG-TCTCTG 1058
Query 1177 GATCTTGTGGATCTTACAAACTGTT-GGAGCTCTCTT-TGGCATCTGGCTTGGTCGTGCT 1234
|| | | |||||| | ||||| || || | | |||| || | | ||||| || || ||
Sbjct 1059 GACCCTATGGATCATCCAAACC-TTAGGCGGTTTCTTCTGCC-TATGGCTAGGCCGAGCC 1116
Query 1235 AGTTCACTCCCTATAGC--TA-TCTTAGCCATGATGCTCTTTTC-CATCGGCACACAAGC 1290
| | ||||| | || | |||| | ||||| ||||| || | ||||| | |||||
Sbjct 1117 ACCACGCTCCCGACCGCGGTTGTCTT--C-ATGATCCTCTTCTCTC-TCGGCGCTCAAGC 1172
Query 1291 GGCTTGTGGAGCT-CTCTTTGGTGTTGCCCCTTTTGTTTCCCGCCGTTCTCTT-GGGCTT 1348
|||||||||||| | ||||| | | ||||| | || ||||| || ||| ||| |
Sbjct 1173 CGCTTGTGGAGCTAC-CTTTGCTATCATACCTTTCATCTCACGCCGCTC-CTTAGGGATC 1230
Query 1349 ATCTCTGGA-TTGACTGGTGCTGGAGGAAATTTTGGGTCGGGTGTT-ACTCAACTTCTT- 1405
|||||||| || ||||| ||||| ||||| || || || ||| || || ||||| | |
Sbjct 1231 ATCTCTGGTCTT-ACTGGAGCTGGTGGAAACTTCGGCTCTGGT-TTGACCCAACT-CGTA 1287
Query 1406 TTCTTCTC 1413
||||||||
Sbjct 1288 TTCTTCTC 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5