BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484902
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45080.1 | Symbols: | P-loop containing nucleoside triphosp... 1098 0.0
AT3G45070.1 | Symbols: | P-loop containing nucleoside triphosp... 1005 0.0
AT2G27570.1 | Symbols: | P-loop containing nucleoside triphosp... 438 3e-122
AT4G26280.1 | Symbols: | P-loop containing nucleoside triphosp... 198 6e-50
> AT3G45080.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:16488715-16489713
REVERSE LENGTH=999
Length=999
Score = 1098 bits (594), Expect = 0.0
Identities = 711/767 (93%), Gaps = 10/767 (1%)
Strand=Plus/Plus
Query 1 ATGGATGAGAAAAAGATTGCGATGAACGTTAGAAACGAAGACTTAAGCGAAGAAACAAAG 60
|||||||||||||||||| |||||||||| |||||||| || |||||||||||| ||||
Sbjct 9 ATGGATGAGAAAAAGATTACGATGAACGTGAGAAACGATGAGTTAAGCGAAGAATCAAAA 68
Query 61 ACTCTAATCTCTTCACTTCCTTCAGACAAAGATTCCACTGGGAG-AAATGTTTGTAAGTA 119
|||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 69 ACTCTAATCTCTTCACTTCCTTCAGACAAAAATTCCACTGGG-GTAAATGTTTGTAAGTA 127
Query 120 CCAAGGATGTTGGTATACTCC-CCATATTCTCCAAGCTGTCCTCAATTTCCAGAAGAACT 178
||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||
Sbjct 128 CCAAGGATGTTGGTATACTCCGCC-TATTCTCCAAGGTGTCCTCAATTTCCAGAAAAACT 186
Query 179 TCAAGCCTCAAGACACTGATATCATCGTTGCTTCGTTCCCTAAATGCGGCACAACTTGGC 238
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 187 TTAAGCCTCAAGACACCGATATCATCGTTGCTTCGTTCCCTAAATGCGGCACCACTTGGC 246
Query 239 TCAAGGCGCTTACATTCGCAGTCGTTTGTAGATCGAAACACCCTTCTCATGATGATCATC 298
|||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 247 TCAAGGCGCTTACATTCGCACTCGTTCGTAGATCGAAGCACCCTTCTCATGATGATCATC 306
Query 299 ATCCTCTTCTTTCTGATAATCCACACGTTCTTGT-ACCCTACCTTGAGATGAATCTCTAT 357
|||| ||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||
Sbjct 307 ATCCACTTCTTTCTGATAATCCACACGTTCTT-TCACCCTCCCTTGAGATGTATCTCTAT 365
Query 358 -TACTATAGCGCAAAGCCGGACTTTACCAAGTTCTCATCATCTCCGAGGCTGTTTTCAAC 416
|| | ||||| ||| || ||| |||||||||||||||||||| ||||||||||||| ||
Sbjct 366 CTA-TGTAGCGAAAATCCCGACCTTACCAAGTTCTCATCATCTTCGAGGCTGTTTTCGAC 424
Query 417 ACACATGCCGTCACATATGTTGCAAGAAGGTCTCAAAGATTCTACTTGTAAATTTGTGTA 476
||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 425 ACACATGCCGTCACATACATTGCAAGAAGGTCTCAAAGGTTCTACTTGTAAAATTGTGTA 484
Query 477 TATGTCCAGGAACGTAAAAGACACATTGGTTTCATATTGGCATTTCTTTTGTAAGAAACA 536
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TATGTCTAGAAACGTAAAAGACACATTGGTTTCATATTGGCATTTCTTTTGTAAGAAACA 544
Query 537 AACCGATGATAACGTTTTAAGCGGTTTCGAGGATACGTTTGAGATGTTTTGTAGGGGAGT 596
||||||||||||| | ||||| || |||||||||| |||||||||||||||||||||||
Sbjct 545 AACCGATGATAACATAATAAGCAGTGTCGAGGATACATTTGAGATGTTTTGTAGGGGAGT 604
Query 597 CACCATTTTT-GGACCTTTTTGGGACCAAGTCCTAAGCTACTGGAGAGGAAGCTTGGAAG 655
|| | ||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 605 CAAC-TTTTTCGGGCCTTTTTGGGACCATGTCCTAAGCTACTGGAGAGGAAGCTTGGAAG 663
Query 656 ATCCAAACCATGTGCTTTTTATGAAGTTTGAGGAGATGAAAGCAGAACCTCGTGAGCAGA 715
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 664 ATCCAAACCATGTGCTTTTTATGAAGTTTGAGGAGATGAAAGAAGAACCTCGTGAGCAGA 723
Query 716 TCAAGAGACTTGCAGAGTTCTTAGGTTGTCCTTTTACTAAGGAAGAA 762
|||||||||| || || |||||||| |||| ||||||||||||||||
Sbjct 724 TCAAGAGACTAGCCGAATTCTTAGGATGTCTTTTTACTAAGGAAGAA 770
> AT3G45070.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:16486283-16487349
REVERSE LENGTH=1067
Length=1067
Score = 1005 bits (544), Expect = 0.0
Identities = 681/747 (91%), Gaps = 10/747 (1%)
Strand=Plus/Plus
Query 21 GATGAACGTT-AGAAACGAAGACTTAAGCGAAGAAACAAAGACTCTAATCTCTTCACTTC 79
||||||| || |||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 6 GATGAAC-TTGAGAATTGAAGACCTAAACGAAGAAACAAAGACTCTAATCTCTTCACTTC 64
Query 80 CTTCAGACAAAGATTCCACTGGGAGAAA-TGTTTGTAAGTACCAAGGATGTTGGTATACT 138
||||||||||||||| |||||||| ||| | |||| ||||| ||||||||||||||||||
Sbjct 65 CTTCAGACAAAGATTTCACTGGGA-AAACTATTTGCAAGTATCAAGGATGTTGGTATACT 123
Query 139 CCCCATATTCTCCAAGCTGTCCTCAATTTCCAGAAGAA-CTTCAAGCCTCAAGACACTGA 197
| | || |||| ||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 124 CACAATGTTCTTCAAGCTGTCCTCAATTTCCAGAA-AAGCTTCAAGCCTCAAGACACCGA 182
Query 198 TATCATCGTTGCTTCGTTCCCTAAATGCGGCACAACTTGGCTCAAGGCGCTTACATTCGC 257
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 183 TATCATCGTTGCTTCGTTCCCTAAATGCGGCACCACTTGGCTCAAGGCGCTTACATTCGC 242
Query 258 AGTCGTTTGTAGATCGAAACACCCTTCTCATGATGATCATCATCCTCTTCTTTCTGATAA 317
| || || |||||| ||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct 243 ACTCCTTCATAGATCAAAACAGCCTTCTCATGATGATGATCATCCTCTTCTTTCTAATAA 302
Query 318 TCCACACGTTCTTGTACCCTACCTTGAGATGA-ATCTCTAT-TACTATAGCGCAAAGCCG 375
|||||||||||||||||||||| ||||||| | |||||||| ||| ||||| ||| ||
Sbjct 303 TCCACACGTTCTTGTACCCTACTTTGAGAT-AGATCTCTATCTAC-GTAGCGAAAATCCT 360
Query 376 GACTTTACCAAGTTCTCATCATCTCCGAGGCTGTTTTCAACACACATGCCGTCACATATG 435
||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
Sbjct 361 GACCTTACCAAGTTCTCATCATCTCCGAGGCTGTTTTCGACACACGTGCCGTCACATACG 420
Query 436 TTGCAAGAAGGTCTCAAAGATTCTACTTGTAAATTTGTGTATATGTCCAGGAACGTAAAA 495
||||||||||||||||||| ||||||||||||| |||||||||| || || |||||||||
Sbjct 421 TTGCAAGAAGGTCTCAAAGGTTCTACTTGTAAAATTGTGTATATATCTAGAAACGTAAAA 480
Query 496 GACACATTGGTTTCATATTGGCATTTCTTTTGTAAGAAACAAACCGATGATAACGTTTTA 555
|||||||||||||||||||||||||||||| |||||||||||||||||| || | ||
Sbjct 481 GACACATTGGTTTCATATTGGCATTTCTTTACTAAGAAACAAACCGATGAAAAAATAATA 540
Query 556 AGCGGTTTCGAGGATACGTTTGAGATGTTTTGTAGGGGAGTCACCATTTTTGGACCTTTT 615
||| ||||||||||||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 541 AGCAGTTTCGAGGATACGTTTGAGATGTTTTGTAGGGGAGTCAGCATTTTCGGGCCTTTT 600
Query 616 TGGGACCAAGTCCTAAGCTACTGGAGAGGAAGCTTGGAAGATCCAAACCATGTGCTTTTT 675
||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGGGATCATGTCTTAAGCTATTGGAGAGGAAGCTTGGAAGATCCAAACCATGTGCTTTTT 660
Query 676 ATGAAGTTTGAGGAGATGAAAGCAGAACCTCGTGAGCAGATCAAGAGACTTGCAGAGTTC 735
||||||||||| ||||||||||||||||||||||| |||||||||| | |||| ||||||
Sbjct 661 ATGAAGTTTGAAGAGATGAAAGCAGAACCTCGTGACCAGATCAAGAAATTTGCCGAGTTC 720
Query 736 TTAGGTTGTCCTTTTACTAAGGAAGAA 762
|||||||||||||||||||||||||||
Sbjct 721 TTAGGTTGTCCTTTTACTAAGGAAGAA 747
> AT2G27570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:11775329-11776305
FORWARD LENGTH=822
Length=822
Score = 438 bits (237), Expect = 3e-122
Identities = 301/332 (91%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 1 ATGGATGAGAAAAAGATTGCGATGAACGTT-AGAAACGAAGACTTAAGCGAAGAAACAAA 59
|||||||| ||||| || ||| | ||| || |||||||| ||||||||||||||||||||
Sbjct 1 ATGGATGATAAAAAAATGGCGGTCAAC-TTGAGAAACGATGACTTAAGCGAAGAAACAAA 59
Query 60 GACTCTAATCTCTTCACTTCCTTCAGACAAAGATTCCACTGGGAGAAATGTTTGTAAGTA 119
|||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 GACTCTCATCTCTTCACTACCTTCAGACAAAGATTCCACTGGGATAAATGTTTGTAAGTA 119
Query 120 CCAAGGATGTTGGTATACTCCCCA-TATTCTCCAAGCTGTCCTCAATTTCCAGAAGAACT 178
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||
Sbjct 120 CCAAGGATGTTGGTATACTCACCACT-TTCTCCAAGCTGTCCTCAATTTCCAGAAAAACT 178
Query 179 TCAAGCCTCAAGACACTGATATCATCGTTGCTTCGTTCCCTAAATGCGGCACAACTTGGC 238
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 179 TCAAGCCTCAAGACACCAATATCATCGTTGCTTCGTTCCCTAAATGCGGCACGACTTGGC 238
Query 239 TCAAGGCGCTTACATTCGCAGTCGTTTGTAGATCGAAACACCCTTCTCATGATGATCATC 298
||||||| ||||||||| || | || |||||| |||||||||||||||||| ||||||
Sbjct 239 TCAAGGCACTTACATTCTCACTAGTGCATAGATCAAAACACCCTTCTCATGATCATCATC 298
Query 299 ATCCTCTTCTTTCTGATAATCCACACGTTCTT 330
|||| ||||||||| | ||||| |||||||||
Sbjct 299 ATCCCCTTCTTTCTAACAATCCGCACGTTCTT 330
> AT4G26280.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:13304721-13305722
REVERSE LENGTH=945
Length=945
Score = 198 bits (107), Expect = 6e-50
Identities = 230/286 (80%), Gaps = 22/286 (8%)
Strand=Plus/Plus
Query 21 GATGAACGTT-AGAAACGAAGACTTAAGC-GAAGAAACAAAGACTCTAATCTCTTCACTT 78
||||||| || ||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 12 GATGAAC-TTGAGAGACGAAGACTTAA-CGGAAGAAACAAAGACTCTAATCTCTTCACTT 69
Query 79 CCTTCAGACAAAGATTCCACTGGGA-GAAATGTTTGTAAGTACCAAGGATGTTGGTAT-A 136
||||||| |||| | | || || |||| | || ||||||||||| | ||||||| |
Sbjct 70 TCTTCAGAGAAAGGGTAC-CTCGGTCGAAACCTCTGCAAGTACCAAGGCTCTTGGTATTA 128
Query 137 CTCCC-CATATTCTCCAAGCTGTCCTCAATTTCCAGA-AGAACTTCAAGCCTCAAGACAC 194
|| | | | ||||||||| ||| ||||||||||||| || || ||||||||||||||
Sbjct 129 CTACAAC-T-TTCTCCAAGGTGTTCTCAATTTCCAGAGAGGTTTT-AAGCCTCAAGACAC 185
Query 195 TGATATCATCGTTGCTTCGTTCCCTAAATGCGGCACAACT-TGGCTCAAGGCGCTTACAT 253
|||||| ||||| || |||| ||| |||| |||||| || ||||||||||| || || |
Sbjct 186 TGATATTATCGTCGCATCGTACCCAAAATCCGGCACC-CTGTGGCTCAAGGCACTCAC-T 243
Query 254 -TCGCAGTCGTTT-GT-AGATCGAAACA-CCCTTCTCATGATGATC 295
|||| | | ||| | ||| | ||| | |||||||||||||||||
Sbjct 244 GTCGC-G-CTTTTTGAGAGAAC-AAAGAACCCTTCTCATGATGATC 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5