BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484911
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45210.1 | Symbols: | Protein of unknown function, DUF584 |... 878 0.0
AT5G60680.1 | Symbols: | Protein of unknown function, DUF584 |... 176 2e-43
> AT3G45210.1 | Symbols: | Protein of unknown function, DUF584
| chr3:16557273-16557970 REVERSE LENGTH=698
Length=698
Score = 878 bits (475), Expect = 0.0
Identities = 617/681 (91%), Gaps = 27/681 (4%)
Strand=Plus/Plus
Query 1 CTTCTTCTCCATCAATGGCAACGA-CGACGAGAAAAAGCTATTACCAACGGCCGAGTCAT 59
|||||||||| |||||||| || | |||||||||| |||||||||||||| |||||||||
Sbjct 29 CTTCTTCTCCTTCAATGGCGAC-AGCGACGAGAAAGAGCTATTACCAACGCCCGAGTCAT 87
Query 60 CGCTTCCTTCCAACAGATCGGACTTACCACATCACCGGAGATTCAGAATTCGAGTTCGAC 119
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 88 CGCTTCCTTCCAACAGATCGGACTTACAACGTCACCGGAGATTCAGAATTCGAGTTCGAC 147
Query 120 GAGTCCGATCTATACTCTACCCGCTCCGATTCGCCTGATTTTCGTCGGAAACTCATCACA 179
||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 148 GAGTCTGATCTATACTCTAACCGCTCCGATTCGCCTGAATTTCGTCGGAAACTCATCACA 207
Query 180 TCTAGCCGTCGATCATCTCCGGCAACCGTAACCACCACGACGGTAGCTTCTTCACTTCCG 239
|| | |||| ||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 208 TCAAACCGTAAATCGTCTCCGGCAACCGTAACCACCACTACAGTAGCTTCTTCACTTCCG 267
Query 240 ATGAATGTACCGGACTGGTCTAAGATTCTCGGGAAAGAGAATCGGAGAAGCATCGATAAC 299
||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 268 ATGAACGTACAGAACTGGTCTAAGATTCTCGGGAAAGAGAATCGGAAAAGCATCGAAAAC 327
Query 300 GATGACGACGGAGACGGTGGAAAATTGCCGCCGCATGAGTATTTGGCGAAGACGAGAATG 359
|||||||| || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 GATGACGATGGCGGCGAAGGAAAATTGCCGCCGCATGAGTATTTGGCGAAGACGAGAATG 387
Query 360 GCTTCGTTCTCTGTGCATGAAGGAATTGGGAGGACATTGAAAGGAAGAGATATGAGTAGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GCTTCGTTCTCTGTGCATGAAGGAATTGGGAGGACATTGAAAGGAAGAGATATGAGTAGG 447
Query 420 GTTCGAAATGCAATTTTGGAAAAGACTGGGTTTTTAGATTAATTTCTTAAAA-GTATAAG 478
|| |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 448 GTGAGAAATGCAATTTTGGAAAAGACTGGGTTCTTAGATTAATTT-TTAAAAAGTATAA- 505
Query 479 GTTCTCttttttt-GGGG---TTTAGTTTTCTCT-TAATAACAATTTTTACTAAATAACT 533
|||||||||||| |||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 506 -TTCTCTTTTTTTTGGGGGGGTTTAGTTTTCT-TATAATAACAATTTTTACTAAATAACT 563
Query 534 GGTGAGAAGAAGAAGCATATAATATTTTCTAGATTATGCCTTCTTTTTTATATTGTAATA 593
||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 564 TTTGAGAAGAAGAAGCATATAATATTTTCTAGATTATGCCTTCTTTTAC-TA----AATA 618
Query 594 AAGTTTTTAATGTTGAGTATCTTG-GATTATAAGTTTTGTACTGTAACTA--T-T-GTAC 648
||||||| ||||||||| || ||| |||||||| || |||||||||||| | | ||||
Sbjct 619 AAGTTTT-AATGTTGAGCAT-TTGAGATTATAAAATTAGTACTGTAACTAACTATTGTAC 676
Query 649 T---ACCAAATTCCAAATCGG 666
| |||||||||||||||||
Sbjct 677 TGCTACCAAATTCCAAATCGG 697
> AT5G60680.1 | Symbols: | Protein of unknown function, DUF584
| chr5:24386145-24386976 FORWARD LENGTH=832
Length=832
Score = 176 bits (95), Expect = 2e-43
Identities = 149/174 (86%), Gaps = 7/174 (4%)
Strand=Plus/Plus
Query 293 CGATAACGATGACGACGGAGACGGT-G-GA-AAATTGCCGCCGCATGAGTATT-TGGCGA 348
|||| ||||||| ||| ||||||| | || || ||||||||||||| || ||||||
Sbjct 423 CGATGACGATGATAACGAAGACGGTGGCGATTGGTTACCGCCGCATGAGT-TTCTGGCGA 481
Query 349 AGACGAGAATGGCTTCGTTCTCTGTGCATGAAGGAATTGGGAGGACATTGAAAGGAAGAG 408
|||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||||
Sbjct 482 AGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTAGGGAGGACATTGAAAGGAAGAG 541
Query 409 ATATGAGTAGGGTTCGAAATGCAATTTTGGAAAAGACT-GGGTTTTTAGATTAA 461
|| ||||||||||||||||||||||||| ||||| | | ||||| |||||||
Sbjct 542 ATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAA-ATTTGGGTTCCAAGATTAA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5