BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484913
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45230.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 822 0.0
> AT3G45230.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr3:16569051-16569827 FORWARD LENGTH=777
Length=777
Score = 822 bits (445), Expect = 0.0
Identities = 560/613 (91%), Gaps = 17/613 (3%)
Strand=Plus/Plus
Query 1 TCATCATCACAACTTCTCAGAAAAAGATCT--G----AGATTTGAAAATGAAGCTCGAAT 54
||||||||||||||||||||| |||||||| | | | |||||||||||||||||||
Sbjct 26 TCATCATCACAACTTCTCAGAGAAAGATCTCAGAAAAAAACTTGAAAATGAAGCTCGAAT 85
Query 55 TCACCATTGTTGCTATGATGCTAATG-CTCGTACTCGTCTCCGGTGAGATTTTAACTAAA 113
||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 86 TCATTATTGTTGCTATGATGCTAA-GTCTCGTACTCGTCTCCGGTGAGATTTTAACTAAA 144
Query 114 TCCTCACCGGCTCCGTCACCGGATCTAACAGATTCGCCTTTAATCCACGCACCACCACCA 173
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 145 TCCTCACCGGCTCCGTCACCGGATCTAGCAGATTCGCCTTTAATCCACGCATCACCACCA 204
Query 174 CCGACAA-TCGGATCTCCTCATTCACCAGCGGAATCTCCAACTGAATACTCTTCTCCTCC 232
||| || ||||||||| | |||| |||||||||||||||| ||||||||||||||||||
Sbjct 205 TCGA-AACTCGGATCTCATAATTCTCCAGCGGAATCTCCAATTGAATACTCTTCTCCTCC 263
Query 233 AGAGCCTGAAACAAAACACTCTCCATCTCCATCCCCTTCTCCGGTGAACTCTCCATCGAT 292
||||||||||||| |||||||||||||||| | | |||||| ||| ||||||||| |
Sbjct 264 AGAGCCTGAAACAGAACACTCTCCATCTCC-T----T-CTCCGGCGAATTCTCCATCGGT 317
Query 293 CTCTCCACCATTACCGAATGAATCTCAATCTCCTTCTTCGTCTGCTTCTCCGTCTCCGTC 352
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 318 TTCTCCACCATTACCGAATGATTCTCAATCTCCTTCTTCGTCTGCTTCTCCGTCTCCGTC 377
Query 353 GCCTGAAGCTAGCGATTTGAATCACAGTGATATTAAAGGAATCGAAGGGGAAAAATCATC 412
|| |||||||||||| |||||||||||||||||| || ||||||||||| || | |
Sbjct 378 ACCGGAAGCTAGCGATGTGAATCACAGTGATATTACTGGGATCGAAGGGGAGAAGTTGCC 437
Query 413 GTCGGGAGGCGGTGGAGGAATGAGCGGCGGGAAGAAAGTTGGGGTTGCTTTTGGAGCGAT 472
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 438 GTCGGGAAGCGGTGGAGGAATGAGCGGCGGGAAGAAAGTTGGAGTTGCTTTTGGAGCGAT 497
Query 473 TGCGGCGGTGTGTGTGGTTGGAGTCGCCGGATTTGTGTACAAGAAACGGCAAGAGAATAT 532
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TGCGGCGGTTTGTGTGGTTGGAGTCGCCGGATTTGTGTACAAGAAACGGCAAGAGAATAT 557
Query 533 TCGTAGATCTCGTTACGGTTACGCCGCCAGAGAGATTCTGTAATgagaga-agagagaga 591
||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 558 TCGCAGGTCTCGTTACGGTTACGCCGCCAGAGAGATTCTGTAATTAGAGAGAGAGAGAGA 617
Query 592 gaTCCGGCGAGGA 604
||||| |||||||
Sbjct 618 GATCCAGCGAGGA 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5