BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg484927

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G29520.1 | Symbols:  | pseudogene, hypothetical protein | ch...   259    1e-68
  AT5G35050.1 | Symbols:  | Domain of unknown function (DUF1985) ...   246    9e-65


> AT3G29520.1 | Symbols:  | pseudogene, hypothetical protein | 
chr3:11351105-11351578 REVERSE LENGTH=474
Length=474

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 168/182 (92%), Gaps = 0/182 (0%)
 Strand=Plus/Plus

Query  1    AATCTAATGGCTCAGTCTATAATTACATTGCCTCCTACGAAATACGGGGAAGAAGATTGC  60
            |||||||||||||||||||| |||||| |||||||||| | ||| ||| || ||||||||
Sbjct  1    AATCTAATGGCTCAGTCTATGATTACAATGCCTCCTACTAGATATGGGAAATAAGATTGC  60

Query  61   AAGATATGAGGATCAATCAACAATCATTCAAAATTTAGTTACTTGAAGACTGTTAAAGAA  120
            || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   AAAATAAGAGGATCAATCAACAATCATTCAAAATTTAGTTATTTGAAGACTGTTAAAGAA  120

Query  121  ATCCTCTCTGACTCGTTATTCAGTAGGTTGAAAACTATTTTTCTTGGCCCGATCATCAAA  180
            || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct  121  ATTCTCTCTGACTCGTTATTCACTAGGCTGAAAACTACTTTTCTTGGCCCGATCATCAAA  180

Query  181  GG  182
            ||
Sbjct  181  GG  182


 Score = 93.5 bits (50),  Expect = 1e-18
 Identities = 57/60 (95%), Gaps = 1/60 (2%)
 Strand=Plus/Plus

Query  182  GAGATTTGGTTTTGCTTCAACAACAAGCCGATGAGATTCTCATTGACTGAGTTTCATCTT  241
            ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct  291  GAGATATGGTTTTGCATCAACAACAAGCCGATGAGATTCTCATTGA-TGAGTTTCATCTT  349


> AT5G35050.1 | Symbols:  | Domain of unknown function (DUF1985) 
| chr5:13311036-13311854 REVERSE LENGTH=819
Length=819

 Score =  246 bits (133),  Expect = 9e-65
 Identities = 167/183 (91%), Gaps = 4/183 (2%)
 Strand=Plus/Plus

Query  1    AATCTAATGGCTCAGTCTATA-ATTACATTGCCTCCTACGAAATACGGGGAAGAAGATTG  59
            |||||| ||||||| |||| | |||||||||||| |||| | ||||||||||||||||||
Sbjct  13   AATCTAGTGGCTCAATCTA-AGATTACATTGCCTACTACTAGATACGGGGAAGAAGATTG  71

Query  60   CAAGATAT-GAGGATCAATCAACAATCATTCAAAATTTAGTTACTTGAAGACTGTTAAAG  118
            |||||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  72   CAAGATATTG-GGATCAATCAACAATCATTCAAAATTTAGTTACTTGAAGATTATTAAAG  130

Query  119  AAATCCTCTCTGACTCGTTATTCAGTAGGTTGAAAACTATTTTTCTTGGCCCGATCATCA  178
            ||||||||||| ||||||||||||||||| || |||||| |||||||||||| |||||||
Sbjct  131  AAATCCTCTCTAACTCGTTATTCAGTAGGCTGGAAACTACTTTTCTTGGCCCAATCATCA  190

Query  179  AAG  181
            |||
Sbjct  191  AAG  193


 Score =  102 bits (55),  Expect = 2e-21
 Identities = 57/58 (98%), Gaps = 0/58 (0%)
 Strand=Plus/Plus

Query  184  GATTTGGTTTTGCTTCAACAACAAGCCGATGAGATTCTCATTGACTGAGTTTCATCTT  241
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  306  GATTTGGTTTTGCATCAACAACAAGCCGATGAGATTCTCATTGACTGAGTTTCATCTT  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16638624919


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5