BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484927 Length=355 Score E Sequences producing significant alignments: (Bits) Value AT3G29520.1 | Symbols: | pseudogene, hypothetical protein | ch... 259 1e-68 AT5G35050.1 | Symbols: | Domain of unknown function (DUF1985) ... 246 9e-65 > AT3G29520.1 | Symbols: | pseudogene, hypothetical protein | chr3:11351105-11351578 REVERSE LENGTH=474 Length=474 Score = 259 bits (140), Expect = 1e-68 Identities = 168/182 (92%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 1 AATCTAATGGCTCAGTCTATAATTACATTGCCTCCTACGAAATACGGGGAAGAAGATTGC 60 |||||||||||||||||||| |||||| |||||||||| | ||| ||| || |||||||| Sbjct 1 AATCTAATGGCTCAGTCTATGATTACAATGCCTCCTACTAGATATGGGAAATAAGATTGC 60 Query 61 AAGATATGAGGATCAATCAACAATCATTCAAAATTTAGTTACTTGAAGACTGTTAAAGAA 120 || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 AAAATAAGAGGATCAATCAACAATCATTCAAAATTTAGTTATTTGAAGACTGTTAAAGAA 120 Query 121 ATCCTCTCTGACTCGTTATTCAGTAGGTTGAAAACTATTTTTCTTGGCCCGATCATCAAA 180 || ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| Sbjct 121 ATTCTCTCTGACTCGTTATTCACTAGGCTGAAAACTACTTTTCTTGGCCCGATCATCAAA 180 Query 181 GG 182 || Sbjct 181 GG 182 Score = 93.5 bits (50), Expect = 1e-18 Identities = 57/60 (95%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 182 GAGATTTGGTTTTGCTTCAACAACAAGCCGATGAGATTCTCATTGACTGAGTTTCATCTT 241 ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 291 GAGATATGGTTTTGCATCAACAACAAGCCGATGAGATTCTCATTGA-TGAGTTTCATCTT 349 > AT5G35050.1 | Symbols: | Domain of unknown function (DUF1985) | chr5:13311036-13311854 REVERSE LENGTH=819 Length=819 Score = 246 bits (133), Expect = 9e-65 Identities = 167/183 (91%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 1 AATCTAATGGCTCAGTCTATA-ATTACATTGCCTCCTACGAAATACGGGGAAGAAGATTG 59 |||||| ||||||| |||| | |||||||||||| |||| | |||||||||||||||||| Sbjct 13 AATCTAGTGGCTCAATCTA-AGATTACATTGCCTACTACTAGATACGGGGAAGAAGATTG 71 Query 60 CAAGATAT-GAGGATCAATCAACAATCATTCAAAATTTAGTTACTTGAAGACTGTTAAAG 118 |||||||| | |||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 72 CAAGATATTG-GGATCAATCAACAATCATTCAAAATTTAGTTACTTGAAGATTATTAAAG 130 Query 119 AAATCCTCTCTGACTCGTTATTCAGTAGGTTGAAAACTATTTTTCTTGGCCCGATCATCA 178 ||||||||||| ||||||||||||||||| || |||||| |||||||||||| ||||||| Sbjct 131 AAATCCTCTCTAACTCGTTATTCAGTAGGCTGGAAACTACTTTTCTTGGCCCAATCATCA 190 Query 179 AAG 181 ||| Sbjct 191 AAG 193 Score = 102 bits (55), Expect = 2e-21 Identities = 57/58 (98%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 184 GATTTGGTTTTGCTTCAACAACAAGCCGATGAGATTCTCATTGACTGAGTTTCATCTT 241 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 306 GATTTGGTTTTGCATCAACAACAAGCCGATGAGATTCTCATTGACTGAGTTTCATCTT 363 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16638624919 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5