BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg484930 Length=1629 Score E Sequences producing significant alignments: (Bits) Value AT3G45400.1 | Symbols: | exostosin family protein | chr3:16651... 2228 0.0 > AT3G45400.1 | Symbols: | exostosin family protein | chr3:16651963-16653678 FORWARD LENGTH=1627 Length=1627 Score = 2228 bits (1206), Expect = 0.0 Identities = 1508/1646 (92%), Gaps = 51/1646 (3%) Strand=Plus/Plus Query 1 ATGGCAATGGTGGAGAAGAATGGTTCTGCAG-TTGGTTATGTAGCTAGAAATCTGTTACT 59 ||||||||||| ||||||||| ||||||| | |||| ||||||||||||||||||||||| Sbjct 1 ATGGCAATGGTAGAGAAGAATAGTTCTGC-GATTGGCTATGTAGCTAGAAATCTGTTACT 59 Query 60 -ATGCTTATTCGTCGTCACGACGATACTCTTTGCTCTTTCGTGTTACTTTGTGTTACGAT 118 | |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | Sbjct 60 GA-GCTTATTCGTCGTCACGACGATCCTCTTTGCTCTTTCCTGTTACTTTGTGTTACGTT 118 Query 119 CCACTGCTCATAATCGATTCCTTAGCTCTACATTTCCATCCAAATCATTCGTGGATGTGA 178 |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| Sbjct 119 CCACTGCTCATAATCGCTTCCTTAGCTCTACATTTCCATCTAAATCATTCGTCGATGT-- 176 Query 179 AAGGCGTAAAGCCGGAGAAAGAGAATTGTAGATGTGTTAAGGACGAGAAA---TCGGTAA 235 || | ||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 177 AA---G----GCCGGAGAAAGCGAATTGTAGATGTGTTAAGGACGAGAAATCGTCGGTAA 229 Query 236 CCGCGGGTCCTCTGAAGGTTTATATGTATAATATGGATCCCGAGTTTCATTTTGGTTTGT 295 |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 230 TCGCGGGTCCTTTGAAGGTTTATATGTATAATATGGATCCAGAGTTTCATTTTGGATTGT 289 Query 296 TAGATTGGAAACCTGATGGGAATAAGAAAGGTAGTG--A-TAGTGTATGGCCTGATATTC 352 |||||||| | | ||| ||| ||||||||| | |||||||||||||||||||| Sbjct 290 TAGATTGG--A----A---GAAGAAGGAAGGTAGTGATAGTAGTGTATGGCCTGATATTC 340 Query 353 AGAAGTATATACCGCCTTATCCTGGAGGTTTGAATTTGCAGCATAGTATCGAGTATTGG- 411 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 341 AGAAGTATATACCACCTTATCCTGGAGGTTTGAATTTGCAGCATAGTATCGAGTATTGGC 400 Query 412 TTGACGTTGGATTTACTTGCTTCGGAGTATGAGAATGCGCCGAG-GGCTATTGCTGCGAA 470 || ||||||||||| ||||| ||||||||||||||||| ||||| | | |||| ||||| Sbjct 401 TT-ACGTTGGATTTGCTTGCATCGGAGTATGAGAATGCACCGAGAAG-TGTTGCGGCGAA 458 Query 471 GCGTGTTTATAATTCTAGTGAAGCTGATGTTATCTTTGTGCCCtttttttCTTCGTTGAG 530 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 459 GCGTGTTTATAATTCTAGTGAAGCTGATGTTATCTTTGTGCCGTTTTTTTCTTCGTTGAG 518 Query 531 TTATAATCGGTTTTCGAAAGTGAATCCTCATCAGAAAACTAGTAGAAATAAGGATTTGCA 590 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 519 TTATAATCGGTTTTCGAAAGTGAATCCTCATCAGAAAACTAGTAGGAATAAGGATTTGCA 578 Query 591 AGGGAAGCTGGTTACGTTTTTGACTGGTCAAGAGGAGTGGAAGA-GATCG-GGTGGTAGA 648 ||||||| |||||||||||||||||| ||||||||||||||||| || | ||||||||| Sbjct 579 AGGGAAGTTGGTTACGTTTTTGACTGCTCAAGAGGAGTGGAAGAGGA--GTGGTGGTAGA 636 Query 649 GATCATGTTGTTCTTGCTCATCATCCCAATAGTATGTTGGATGCTAGAAATAAGCTGTTT 708 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 637 GATCATGTTGTTCTTGCTCATCATCCGAATAGTATGTTAGATGCTAGAAATAAGTTGTTT 696 Query 709 CCGGCAATGTTTATACTCTCAGACTTTGGAAGGTACCCTCCTACTGTGGCAAACGTTGAG 768 || |||||||||||||| || |||||||||||||| |||||||||||||| || |||||| Sbjct 697 CCTGCAATGTTTATACTTTCGGACTTTGGAAGGTATCCTCCTACTGTGGCTAATGTTGAG 756 Query 769 AAAGATATTATCGCGCCTTATAAGCATGTCATCAAAGCATATGAAAACGATACATCTGGT 828 |||||| | || ||||| ||||||||||| || ||||| ||||||||||||||||| ||| Sbjct 757 AAAGATGTCATTGCGCCGTATAAGCATGTTATTAAAGCTTATGAAAACGATACATCGGGT 816 Query 829 TTCGATAGTAGACCAATTCTGCTTTACTTTCAGGGTGCCATCTACAGGAAAGATGGCGGG 888 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 817 TTCGATAGTAGACCGATTCTGCTTTACTTTCAGGGTGCTATCTACAGGAAAGATGGCGGG 876 Query 889 TTTGTGCGTCAGGAGTTATTCTACCTCTTGCAAGATGAGAAAGACGTGCATTTCTCGTTT 948 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 877 TTTGTGCGTCAGGAGTTATTCTACCTCTTGCAAGATGAGAAAGATGTGCATTTCTCGTTT 936 Query 949 GGGAGTGTGAGAAACGGAGGAATAAACAAAGCAAGCCAAGGAATGCACAACTCCAAGTTC 1008 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 937 GGGAGTGTGAGAAACGGAGGTATAAACAAAGCAAGCCAAGGAATGCACAATTCCAAGTTC 996 Query 1009 TGCCTCAACATTGCAGGAGACACTCCTTCATCAAACCGTCTCTTTGACGCCATTGCCAGT 1068 || ||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 997 TGTCTCAATATTGCCGGAGACACTCCTTCGTCAAACCGTCTCTTTGACGCCATAGCCAGT 1056 Query 1069 CACTGTGTTCCTGTCATTATCAGTGACGACATTGAGCTTCCTTTCGAGGACGTTATTGAT 1128 ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 1057 CACTGTGTTCCTGTCATTATCAGCGACGACATTGAGCTTCCTTTTGAGGATGTTATTGAT 1116 Query 1129 TACTCTGAGTTCTCTGTGTTTGTTCGCACTTCTGATGCCTTGAAAGAGAACTTCTTGGTT 1188 |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1117 TACTCTGAGTTCTCGGTGTTTGTTCGCACCTCTGATGCATTGAAAGAGAACTTCTTGGTT 1176 Query 1189 AACTTAATAAGAGGAATAAGCAAAGAGGAATGGACACGAATGTGGAATCGATTAAAGGAA 1248 ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1177 AACTTAATACGAGGAATAACCAAAGAGGAATGGACACGAATGTGGAATCGATTAAAGGAA 1236 Query 1249 GTGGAGAAATATTATGAGTTCCATTTTCCGTCAAAGGTAGATGATGCAGTCCAAATGATA 1308 ||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||| Sbjct 1237 GTGGAGAAATATTATGAGTTCCATTTTCCATCAAAGGTAGATGATGCGGTGCAGATGATA 1296 Query 1309 TGGCAAGCGATCGCACGCAAAGTTCCGGGTGTTAAAATGAGAATTCACAAGTCTCGAAGG 1368 ||||||||||| || || ||||||||||||||||||||||| ||||| |||||| ||||| Sbjct 1297 TGGCAAGCGATTGCCCGTAAAGTTCCGGGTGTTAAAATGAGGATTCATAAGTCTAGAAGG 1356 Query 1369 TATTCTGGATCTGTTTCTGACACAGGGAAAGAATCAAGATGGTCGTCTTTGATACCTCGG 1428 |||||||||||||||||||| || |||||||||||||||||||| || |||||||||||| Sbjct 1357 TATTCTGGATCTGTTTCTGAGACCGGGAAAGAATCAAGATGGTCTTCATTGATACCTCGG 1416 Query 1429 AGTTTCTGGTGAATAAAGATGAGATTTTTTCTGTCTTCTTTTTTCTCAGAGGACATCAAA 1488 |||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||| Sbjct 1417 AGTTTCTGGTGAATAAAGATGAGATTTTTT-TGTCTTCATTTTCC-CAGAGGACATCAAA 1474 Query 1489 TTGTTCtttt-tttttaaaaaaattttttttGTAGAGAGAAGTTTATGTTTGGATCA-GA 1546 ||||| |||| ||||| ||||| | ||||||| ||||||||||| |||||| || Sbjct 1475 TTGTTTTTTTGTTTTTG------TTTTTGT-GTAGAGATAAGTTTATGTT-GGATCAAGA 1526 Query 1547 TGATTTGTCAA-TCA--CCCCAAATCATAGGTTATAGACAGAGAGACAAGTCTTCACTCT 1603 ||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||| Sbjct 1527 TGATTTGTCAACTTTTTCCCCTAATCATAGGTTATAGATAGAGAGACAAGTCTTCACTCT 1586 Query 1604 AATTTGATTTCTGCTTTTCACCATAG 1629 |||||||||||| ||||||||||||| Sbjct 1587 AATTTGATTTCTTCTTTTCACCATAG 1612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80471473635 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5