BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484930
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45400.1 | Symbols: | exostosin family protein | chr3:16651... 2228 0.0
> AT3G45400.1 | Symbols: | exostosin family protein | chr3:16651963-16653678
FORWARD LENGTH=1627
Length=1627
Score = 2228 bits (1206), Expect = 0.0
Identities = 1508/1646 (92%), Gaps = 51/1646 (3%)
Strand=Plus/Plus
Query 1 ATGGCAATGGTGGAGAAGAATGGTTCTGCAG-TTGGTTATGTAGCTAGAAATCTGTTACT 59
||||||||||| ||||||||| ||||||| | |||| |||||||||||||||||||||||
Sbjct 1 ATGGCAATGGTAGAGAAGAATAGTTCTGC-GATTGGCTATGTAGCTAGAAATCTGTTACT 59
Query 60 -ATGCTTATTCGTCGTCACGACGATACTCTTTGCTCTTTCGTGTTACTTTGTGTTACGAT 118
| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 60 GA-GCTTATTCGTCGTCACGACGATCCTCTTTGCTCTTTCCTGTTACTTTGTGTTACGTT 118
Query 119 CCACTGCTCATAATCGATTCCTTAGCTCTACATTTCCATCCAAATCATTCGTGGATGTGA 178
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 119 CCACTGCTCATAATCGCTTCCTTAGCTCTACATTTCCATCTAAATCATTCGTCGATGT-- 176
Query 179 AAGGCGTAAAGCCGGAGAAAGAGAATTGTAGATGTGTTAAGGACGAGAAA---TCGGTAA 235
|| | ||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 177 AA---G----GCCGGAGAAAGCGAATTGTAGATGTGTTAAGGACGAGAAATCGTCGGTAA 229
Query 236 CCGCGGGTCCTCTGAAGGTTTATATGTATAATATGGATCCCGAGTTTCATTTTGGTTTGT 295
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 230 TCGCGGGTCCTTTGAAGGTTTATATGTATAATATGGATCCAGAGTTTCATTTTGGATTGT 289
Query 296 TAGATTGGAAACCTGATGGGAATAAGAAAGGTAGTG--A-TAGTGTATGGCCTGATATTC 352
|||||||| | | ||| ||| ||||||||| | ||||||||||||||||||||
Sbjct 290 TAGATTGG--A----A---GAAGAAGGAAGGTAGTGATAGTAGTGTATGGCCTGATATTC 340
Query 353 AGAAGTATATACCGCCTTATCCTGGAGGTTTGAATTTGCAGCATAGTATCGAGTATTGG- 411
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 AGAAGTATATACCACCTTATCCTGGAGGTTTGAATTTGCAGCATAGTATCGAGTATTGGC 400
Query 412 TTGACGTTGGATTTACTTGCTTCGGAGTATGAGAATGCGCCGAG-GGCTATTGCTGCGAA 470
|| ||||||||||| ||||| ||||||||||||||||| ||||| | | |||| |||||
Sbjct 401 TT-ACGTTGGATTTGCTTGCATCGGAGTATGAGAATGCACCGAGAAG-TGTTGCGGCGAA 458
Query 471 GCGTGTTTATAATTCTAGTGAAGCTGATGTTATCTTTGTGCCCtttttttCTTCGTTGAG 530
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 459 GCGTGTTTATAATTCTAGTGAAGCTGATGTTATCTTTGTGCCGTTTTTTTCTTCGTTGAG 518
Query 531 TTATAATCGGTTTTCGAAAGTGAATCCTCATCAGAAAACTAGTAGAAATAAGGATTTGCA 590
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 519 TTATAATCGGTTTTCGAAAGTGAATCCTCATCAGAAAACTAGTAGGAATAAGGATTTGCA 578
Query 591 AGGGAAGCTGGTTACGTTTTTGACTGGTCAAGAGGAGTGGAAGA-GATCG-GGTGGTAGA 648
||||||| |||||||||||||||||| ||||||||||||||||| || | |||||||||
Sbjct 579 AGGGAAGTTGGTTACGTTTTTGACTGCTCAAGAGGAGTGGAAGAGGA--GTGGTGGTAGA 636
Query 649 GATCATGTTGTTCTTGCTCATCATCCCAATAGTATGTTGGATGCTAGAAATAAGCTGTTT 708
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 637 GATCATGTTGTTCTTGCTCATCATCCGAATAGTATGTTAGATGCTAGAAATAAGTTGTTT 696
Query 709 CCGGCAATGTTTATACTCTCAGACTTTGGAAGGTACCCTCCTACTGTGGCAAACGTTGAG 768
|| |||||||||||||| || |||||||||||||| |||||||||||||| || ||||||
Sbjct 697 CCTGCAATGTTTATACTTTCGGACTTTGGAAGGTATCCTCCTACTGTGGCTAATGTTGAG 756
Query 769 AAAGATATTATCGCGCCTTATAAGCATGTCATCAAAGCATATGAAAACGATACATCTGGT 828
|||||| | || ||||| ||||||||||| || ||||| ||||||||||||||||| |||
Sbjct 757 AAAGATGTCATTGCGCCGTATAAGCATGTTATTAAAGCTTATGAAAACGATACATCGGGT 816
Query 829 TTCGATAGTAGACCAATTCTGCTTTACTTTCAGGGTGCCATCTACAGGAAAGATGGCGGG 888
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 817 TTCGATAGTAGACCGATTCTGCTTTACTTTCAGGGTGCTATCTACAGGAAAGATGGCGGG 876
Query 889 TTTGTGCGTCAGGAGTTATTCTACCTCTTGCAAGATGAGAAAGACGTGCATTTCTCGTTT 948
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 877 TTTGTGCGTCAGGAGTTATTCTACCTCTTGCAAGATGAGAAAGATGTGCATTTCTCGTTT 936
Query 949 GGGAGTGTGAGAAACGGAGGAATAAACAAAGCAAGCCAAGGAATGCACAACTCCAAGTTC 1008
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 937 GGGAGTGTGAGAAACGGAGGTATAAACAAAGCAAGCCAAGGAATGCACAATTCCAAGTTC 996
Query 1009 TGCCTCAACATTGCAGGAGACACTCCTTCATCAAACCGTCTCTTTGACGCCATTGCCAGT 1068
|| ||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 997 TGTCTCAATATTGCCGGAGACACTCCTTCGTCAAACCGTCTCTTTGACGCCATAGCCAGT 1056
Query 1069 CACTGTGTTCCTGTCATTATCAGTGACGACATTGAGCTTCCTTTCGAGGACGTTATTGAT 1128
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 1057 CACTGTGTTCCTGTCATTATCAGCGACGACATTGAGCTTCCTTTTGAGGATGTTATTGAT 1116
Query 1129 TACTCTGAGTTCTCTGTGTTTGTTCGCACTTCTGATGCCTTGAAAGAGAACTTCTTGGTT 1188
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1117 TACTCTGAGTTCTCGGTGTTTGTTCGCACCTCTGATGCATTGAAAGAGAACTTCTTGGTT 1176
Query 1189 AACTTAATAAGAGGAATAAGCAAAGAGGAATGGACACGAATGTGGAATCGATTAAAGGAA 1248
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 AACTTAATACGAGGAATAACCAAAGAGGAATGGACACGAATGTGGAATCGATTAAAGGAA 1236
Query 1249 GTGGAGAAATATTATGAGTTCCATTTTCCGTCAAAGGTAGATGATGCAGTCCAAATGATA 1308
||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 1237 GTGGAGAAATATTATGAGTTCCATTTTCCATCAAAGGTAGATGATGCGGTGCAGATGATA 1296
Query 1309 TGGCAAGCGATCGCACGCAAAGTTCCGGGTGTTAAAATGAGAATTCACAAGTCTCGAAGG 1368
||||||||||| || || ||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1297 TGGCAAGCGATTGCCCGTAAAGTTCCGGGTGTTAAAATGAGGATTCATAAGTCTAGAAGG 1356
Query 1369 TATTCTGGATCTGTTTCTGACACAGGGAAAGAATCAAGATGGTCGTCTTTGATACCTCGG 1428
|||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||
Sbjct 1357 TATTCTGGATCTGTTTCTGAGACCGGGAAAGAATCAAGATGGTCTTCATTGATACCTCGG 1416
Query 1429 AGTTTCTGGTGAATAAAGATGAGATTTTTTCTGTCTTCTTTTTTCTCAGAGGACATCAAA 1488
|||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||
Sbjct 1417 AGTTTCTGGTGAATAAAGATGAGATTTTTT-TGTCTTCATTTTCC-CAGAGGACATCAAA 1474
Query 1489 TTGTTCtttt-tttttaaaaaaattttttttGTAGAGAGAAGTTTATGTTTGGATCA-GA 1546
||||| |||| ||||| ||||| | ||||||| ||||||||||| |||||| ||
Sbjct 1475 TTGTTTTTTTGTTTTTG------TTTTTGT-GTAGAGATAAGTTTATGTT-GGATCAAGA 1526
Query 1547 TGATTTGTCAA-TCA--CCCCAAATCATAGGTTATAGACAGAGAGACAAGTCTTCACTCT 1603
||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1527 TGATTTGTCAACTTTTTCCCCTAATCATAGGTTATAGATAGAGAGACAAGTCTTCACTCT 1586
Query 1604 AATTTGATTTCTGCTTTTCACCATAG 1629
|||||||||||| |||||||||||||
Sbjct 1587 AATTTGATTTCTTCTTTTCACCATAG 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80471473635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5