BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484935
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48870.1 | Symbols: ATCLPC, ATHSP93-III, HSP93-III | Clp ATP... 846 0.0
AT3G45450.1 | Symbols: | Double Clp-N motif-containing P-loop ... 627 9e-179
> AT3G48870.1 | Symbols: ATCLPC, ATHSP93-III, HSP93-III | Clp ATPase
| chr3:18122198-18126638 REVERSE LENGTH=3157
Length=3157
Score = 846 bits (458), Expect = 0.0
Identities = 586/645 (91%), Gaps = 20/645 (3%)
Strand=Plus/Plus
Query 385 GTTATACGTATGGTCGGGGGAAACAATGAAGTCACATCAAGCGTTGGTGGAGGAAACATC 444
||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| || |
Sbjct 884 GTTATACGTATGGTCGGGGAAAACAATGAAGTCACAGCAAGCGTTGGTGGGGGAAGCAGC 943
Query 445 GGAAACAG---AATGGCAACACTAGAAGAGTATGGGACTAACTTAACTAAATTAGCAGAG 501
|||||||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 944 GGAAACAGCAAAATGCCAACACTTGAAGAGTATGGGACTAACTTAACTAAACTAGCAGAG 1003
Query 502 GAGGGTAAACTTGATCCGGTTGTTGGAAGGCAGCCACAGATCGAACGAGTGGTCCAGATC 561
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 GAGGGTAAACTGGATCCGGTTGTTGGAAGGCAGCCACAGATCGAACGAGTGGTCCAGATC 1063
Query 562 TTGGCTCGAAGAACTAGGAACAACCCGTGTCTTATTGGAGAACGTGGAGTTGGAAAGA-G 620
|||||||||||||| | ||||||||| |||||||||||||||| ||||||||| |||| |
Sbjct 1064 TTGGCTCGAAGAACCAAGAACAACCCATGTCTTATTGGAGAACCTGGAGTTGGTAAGACG 1123
Query 621 AGCAATAGCGGAAGGACTTGCACAGCGAATCCCTAGTGGTGATGTTCCTGAAACAATCAA 680
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1124 -GCAATAGCAGAAGGACTTGCACAGCGAATAGCTAGTGGTGATGTTCCTGAAACAATCGA 1182
Query 681 GGGGAAGACGGTTATAACCCTTGATAAGGGTCTTCTAGTGGCTGGAACAAAATACCGTGG 740
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1183 GGGGAAGACGGTTATAACCCTTGATATGGGTCTTCTAGTGGCTGGAACGAAATACCGTGG 1242
Query 741 AGAATCCGAGGAAAGACTGAAGAAGCTTATGGAGGAAATCAGGCAAAGTGAAGACATAAT 800
||| | |||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 1243 AGAGTTCGAGGAAAGATTGAAGAAGCTTATGGAGGAAATCAGGCAAAGTGATGAGATAAT 1302
Query 801 TCTGTTTATTGATGAAATGCACATGCTCATTGGTACAGGAGCCGCTGAAGGTGCGACCGA 860
|||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||| |||
Sbjct 1303 TCTGTTTATTGATGAAGTGCACACGCTCATCGGTGCAGGAGCCGCTGAAGGTGCGATCGA 1362
Query 861 TGCTGCTAACATCTTAAAGCCAGCTGTAGCAAGAGGTGAATTGCAGA--ACCGGA--AAC 916
||||||||||||||||||||||||| |||||||||||||||||||| | || |||
Sbjct 1363 TGCTGCTAACATCTTAAAGCCAGCTCTAGCAAGAGGTGAATTGCAGTGTATTGGTGCAAC 1422
Query 917 T-CAAGT--TGA--A--G----CACATTGAGAAAGATCCTGCATTGGAGAGACGGTTTCA 965
||| | ||| | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1423 AACAATTGATGAGTACAGGAAACACATTGAGAAAGATCCTGCATTGGAGAGACGGTTCCA 1482
Query 966 GCCTGTGAAGGTACCTGAACCAACTGTAGAAGAAGCTATACAGAT 1010
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1483 GCCTGTGAAAGTACCTGAACCAACTGTAGAAGAAGCTATACAGAT 1527
Score = 388 bits (210), Expect = 5e-107
Identities = 271/300 (90%), Gaps = 6/300 (2%)
Strand=Plus/Plus
Query 1 ATGTTTGAGCGTTTTACCGA-AAGAGCAATTAAGGTCATTATGCTGGCTAAAGAGGAATC 59
|||||||||||||||||||| || ||||||||||||||| |||||| || |||||||| |
Sbjct 473 ATGTTTGAGCGTTTTACCGAGAA-AGCAATTAAGGTCATAATGCTGTCTCAAGAGGAAGC 531
Query 60 TCGGAGGCTTGGTCATAACTTTGTTGGGACTGAGCAGATACTGCTAGGTCTAATTGGGGA 119
|||||| ||||| ||||||||||||||||||||||| |||||| | ||||||||||| ||
Sbjct 532 TCGGAGACTTGGCCATAACTTTGTTGGGACTGAGCAAATACTGTTGGGTCTAATTGGAGA 591
Query 120 AGGGACTGGGATCGCTGCAAAGGTTCTTAAATCCATGGGGATCAATCTTAAAGATTCACG 179
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AGGGACTGGGATTGCCGCCAAGGTTCTTAAATCCATGGGGATCAATCTTAAAGATTCACG 651
Query 180 TGTGGAAGTGGAAAAGATAATTGGAAGAGGCAGTGGATTTTGTG-CACTGGAGATTCC-T 237
|||||||| |||||||||||||| |||||||||||||| ||| || |||||||||| |
Sbjct 652 CGTGGAAGTAGAAAAGATAATTGGGAGAGGCAGTGGATTC-GTGGCAGTGGAGATTCCAT 710
Query 238 TTAACTCCTCGAACAAAGCGTGTTCTGGATTTGTCACTAGAGGAAGCTCGACAACTTGGG 297
||| ||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 711 TTA-CTCCTCGCGCAAAGCGGGTGCTGGAGTTGTCACTAGAGGAAGCTCGACAACTTGGG 769
> AT3G45450.1 | Symbols: | Double Clp-N motif-containing P-loop
nucleoside triphosphate hydrolases superfamily protein | chr3:16673146-16674880
FORWARD LENGTH=1026
Length=1026
Score = 627 bits (339), Expect = 9e-179
Identities = 535/621 (86%), Gaps = 47/621 (8%)
Strand=Plus/Plus
Query 498 AGAGGAGGGTAAACTTGATCCGGTTGTTGGAAGGCAGCCACAGATCGAACGAGTGGTCCA 557
||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 445 AGAAGA-GGTAAACTGGATCCGGTTGTTGGAAGGCAGCCACAGATAAAACGAGTGGTCCA 503
Query 558 GATCTTGGCTCGAAGAA-CT--AGGAACAACCCGTGTCTTATTGGAGAA-CGTGGAGTTG 613
||||||||||||||||| || ||||||||| |||||||||||||| || | ||||||||
Sbjct 504 GATCTTGGCTCGAAGAACCTGCAGGAACAACGCGTGTCTTATTGGA-AAGCCTGGAGTTG 562
Query 614 GAAAGAGAGCAATAGCGGAAGGACTTGCACAGCGAATCCCTAGTGGTGATGTTCCTGAAA 673
| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 563 GGAAGAGAGCAATAGCGGAAGGAATTGCACAGCGAATTGCTAGTGGTGATGTTCCTGAAA 622
Query 674 CAATCAAGGGGAAGACGGTTATAACCCT-TGATAAGGGTCTTCTAGTGGCTGGAACAAAA 732
||||||||||||||| | || | || |||| | | ||||||||||| |||
Sbjct 623 CAATCAAGGGGAAGA----T-GAA---TGTG-GCAGGG-AAT-T-GTGGCTGGAACGAAA 670
Query 733 TACC-GTGGAGAATCCGA-GGAAAGACTGAAGAAGCTTATGGAGGAAATCAGGCAAAGTG 790
| || |||||||| |||| ||||| | |||||||| || | || |||||||||
Sbjct 671 T-CCGGTGGAGAAGCCGAGGGAAA-ATTGAAGAAG-TT-T-------AT-GGGCAAAGTG 718
Query 791 AAGACATAATTCTGTTTATTGATGAAATGCACATGCTCATTGGTACAGGAGCCGCTGAAG 850
| |||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |||||
Sbjct 719 ATGACATAATTCTGTTTATTGATGAAATGCACTTGCTCATCGGTGCAGGAGCCGTTGAAG 778
Query 851 GTGCGACCGATGCTGCTAACATCTTAAAGCCAGCTGTAGCAAGAGGTGAATTGCAGAACC 910
|||||| |||||||||||||||||||| |||||| ||| |||| ||||||||| |
Sbjct 779 GTGCGATAGATGCTGCTAACATCTTAAAACCAGCTCTAGAAAGATGTGAATTGC---A-- 833
Query 911 GGAAACTCAAGTTGAAGCACATTGAGAAAGATCCTGCATTGGAGAGACGGTTTCAGCCTG 970
| | | || ||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 834 -G-TA--C-AG--GAAGCACATTGAGAATGATCCTGCATTGGAGAGACGGTTCCAGCCTG 886
Query 971 TGAAGGTACCTGAACCAACTGTAGAAGAAGCTATACAGATCACTACTGCTTTAGCTAAAG 1030
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 887 TGAAGGTACCTGAACCAACTGTAGAAGAAGCTATACAGATCACTACTGTTTTAGCTAAAG 946
Query 1031 GCAAAGAAGTGAGCAAAGCCGATAATGAAGCAGAGGAAGGAGGACCTACTGTTAAGGAAG 1090
|||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 947 GCAAAGAAGTGAACAAAGCCGATAATGAAGCCGAGGAAGGAAGACCTACTGTTACGGAAG 1006
Query 1091 CCGATAATCGG-GCTGAGTAA 1110
|||||||| | |||||||||
Sbjct 1007 CCGATAAT-GAAGCTGAGTAA 1026
Score = 521 bits (282), Expect = 4e-147
Identities = 356/390 (91%), Gaps = 12/390 (3%)
Strand=Plus/Plus
Query 1 ATGTTTGAGCGTTTTACCGA-AAGAGCAATTAAGGTCATTATGCTGGCTAAAGAGGAATC 59
||||||||||||||||| || || ||||||||||||||| | | ||||| |||||||| |
Sbjct 1 ATGTTTGAGCGTTTTACTGAGAA-AGCAATTAAGGTCATAACGTTGGCTCAAGAGGAAGC 59
Query 60 TCGGAGGCTTGGTC-ATAACTTTGTTGGGACTGAGCAGATACTGCTAGGTCTAATTGGGG 118
|||||| ||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 60 TCGGAGACTTGG-CTATAACTTTTTTGGGACTGAGCATATACTGCTAAGTCTAATTGGGG 118
Query 119 AAGGGACTGGGATCGCTGCAAAGGTTCTTAAATCCATGGGGATCAATCTTAAAGATTCAC 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 AAGGGACTGGGATCGCTGCAAAGGTTCTTAAATCCATGGGGATCAATCTTAAAGATGCAC 178
Query 179 GTGTGGAAGTGGAAAAGATAATTGGAAGAGGCAGTGGATTTTGT-GCACTGGAGATTCC- 236
||||||||||||||||||||||||| ||||||||||||||| || | | ||||||||||
Sbjct 179 GTGTGGAAGTGGAAAAGATAATTGGGAGAGGCAGTGGATTT-GTTGTAGTGGAGATTCCA 237
Query 237 TTTAACTCCTCGAACAAAGCGTGTTCTGGATTTGTCACTAGAGGAAGCTCGACAACTTGG 296
|||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 238 TTTA-CTCCTCG--CAAAGCGTGTGCTGGATTTGTCACTAGAGGAAGCTCGACAACTCGG 294
Query 297 GG-A-GGGTATTGCAGTTCGTGTCTTGGAGATATTGGGTGCAGGTCCTAGTAATATCCGG 354
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 295 CATAAGGGTATTGCAGTTCGTGTCTTGGAGATATTGGGTGCAGATCCTAGTAATATCCGG 354
Query 355 ACACTGGTAAATGCACCTATTCTTGTTAAT 384
|||| ||||||||||| ||||||||||||
Sbjct 355 ACACAAGTAAATGCACCAATTCTTGTTAAT 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5