BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484937
Length=440
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45500.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 575 1e-163
AT3G45525.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 84.2 9e-16
AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zin... 73.1 2e-12
> AT3G45500.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1);
Has 48 Blast hits to 46 proteins in 4 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:16688418-16689693 REVERSE LENGTH=606
Length=606
Score = 575 bits (311), Expect = 1e-163
Identities = 397/440 (90%), Gaps = 0/440 (0%)
Strand=Plus/Plus
Query 1 ATGCTGAAGGGATTTACCCGCTCGAGCACTAGTCCTCAGTTGTGTAGCCTTTACTTCAAA 60
||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1 ATGCTCAAGGGATTTACTCGCTCGAGCATTAGTCCTCAGTTGTGCAGCCTTTACTTCAAA 60
Query 61 GGTTTGGTTGGCGTTGACTCATTGGCGGGATTTGGGGTTGCAATTTGCGGGCATAGAGAT 120
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GGTTTGGTTGGCGATGACTCATTGGCTGGATTTGGGGTTGCAATTTGCGGGCATAGAGAT 120
Query 121 GATCTCTTGTTTCAGCTGAATGGACCAATTCATGGCTCGGATATTACTGTTTTGGAGGCT 180
||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 GATATCTTATTTCAGCTGAATGCACCAATTCATGGCTCGGATATTACTGTTTTGGAGGCT 180
Query 181 GAACTTATAGCATTGAAGCAAGGACTAACGGAAGCTGCGGGATTTAAGTCGAGCGTCCCG 240
|||||||| ||||| |||| |||||||| |||||||||||||||||||| ||| | ||
Sbjct 181 GAACTTATGGCATTAAAGCGAGGACTAATAGAAGCTGCGGGATTTAAGTCTAGCTTTACG 240
Query 241 ATTTTTATAGCCGGAAACAGTATTAGATATGCTTATGAACTAGCAAGGGCGACACTAGTT 300
|||||| | | |||| ||||| ||||||| || ||||||||||||||||||| |||||
Sbjct 241 ATTTTTGTGGAGGGAAGTAGTATCAGATATGTTTCTGAACTAGCAAGGGCGACAATAGTT 300
Query 301 TCTAAGATAAGAATATATGGGGATCCTCCTTGCAGATCTCTAAATGGACTAGAGAAGCTG 360
||| || |||| |||| || |||||||||| |||| |||||||||||| |||||||||||
Sbjct 301 TCTGAGTTAAGCATATCTGTGGATCCTCCTAGCAGCTCTCTAAATGGAATAGAGAAGCTG 360
Query 361 AAGTTAGGAGATGTTGTTGCATCAAATGTGGTGAACCCTTATGCATCAACTGCAAGATTT 420
||||||| ||||||| ||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 361 AAGTTAGAAGATGTTATTGTATGGAATGTGGTGAACCCTTATGCATCAACTGCAAAATTT 420
Query 421 GACAAATCAGAAAATGTGGC 440
| ||||||||||||||||||
Sbjct 421 GGCAAATCAGAAAATGTGGC 440
> AT3G45525.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45480.1);
Has 31 Blast hits to 29 proteins in 2 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:16697273-16697828 REVERSE LENGTH=354
Length=354
Score = 84.2 bits (45), Expect = 9e-16
Identities = 107/136 (79%), Gaps = 7/136 (5%)
Strand=Plus/Plus
Query 79 TCATTGGCGGGATTTGGGGTTGCAATTTGCGG-GCATAGAG-ATGAT--C-TCTTGTTTC 133
|||||||||||||||||||||||||||||| | | | |||| ||||| | |||||||||
Sbjct 73 TCATTGGCGGGATTTGGGGTTGCAATTTGCAGAG-A-AGAGGATGATAGCATCTTGTTTC 130
Query 134 AGCTGAATGGACCAATTCATGGCTCGGATATTACTGTTTTGGAGGCTGAACTTATAGCAT 193
|| || | || ||||| ||| || ||| | | || |||| | || ||||| ||||
Sbjct 131 AGAAAAAAGTTTCACTTCATTACTCCGACATTTCAGGTTGGGAGACAGAGCTTATGGCAT 190
Query 194 TGAAGCAAGGACTAAC 209
|||||| |||||||||
Sbjct 191 TGAAGCTAGGACTAAC 206
> AT3G45480.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16683204-16684592 REVERSE LENGTH=1208
Length=1208
Score = 73.1 bits (39), Expect = 2e-12
Identities = 106/137 (77%), Gaps = 9/137 (7%)
Strand=Plus/Plus
Query 79 TCATTGGCGGGATTTGGGGTTGCAATTTGCGG-GCATAGAG-ATGATC-T--CTTGTTTC 133
|||||||||||||||||||||||||||| | | | | |||| ||||| | |||||||
Sbjct 76 TCATTGGCGGGATTTGGGGTTGCAATTTACAGAG-A-AGAGGATGATAGTATCTTGTTTA 133
Query 134 AGCTGAATGGACCAATTCATGGCTCGGA-TATTACTGTTTTGGAGGCTGAACTTATAGCA 192
|| || | || ||||| | | || | |||| | || ||||||||| ||||| |||
Sbjct 134 AGAAAAAAGTTTCACTTCATTACCCCGACT-TTACAGCTTGGGAGGCTGAGCTTATGGCA 192
Query 193 TTGAAGCAAGGACTAAC 209
||||||| |||||||||
Sbjct 193 TTGAAGCTAGGACTAAC 209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20911383584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5