BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484938
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45540.1 | Symbols: | RING/U-box protein with C6HC-type zin... 1338 0.0
AT3G45560.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 95.3 9e-19
AT3G45500.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 86.1 6e-16
> AT3G45540.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr3:16706312-16707649 REVERSE LENGTH=1047
Length=1047
Score = 1338 bits (724), Expect = 0.0
Identities = 875/948 (92%), Gaps = 10/948 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGGACCAATTCATCATGATTCCACCATTACACCTTTGGAGGCTGAGCTTACCGCA 60
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAGGACCAATTCATCATGACTCCAACATTACACCTTTGGAGGCTGAGCTTACCGCA 60
Query 61 TTGAAGCGAGGACTAACCGAAGCTGTCATGGGAAGATGCATACCAGAGGAGAATAAAACT 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TTGAAGCGAGGACTAACCGAAGCTGTCATGGGAAGATGCGTACCAGAGGAGAATAAAACT 120
Query 121 GCCTTGCTAATGATTGATGTGCAACGTATAAGAGAAGGATTTAAGTCGAGCTTTCCGATT 180
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 GCCTTGCTAATGATTGATGTGCAACGTATAAGAGAAGGATTCAAGTCAAGCTTTCCGATT 180
Query 181 TTCGTGGAGGGAAATAGTGTAAGTTATGCTTATAAACTAGCAAGGGAAACAAAAGTTTCT 240
|||||||||||||| || | ||||||||||||||||||||||||||||||| |||||||
Sbjct 181 TTCGTGGAGGGAAAAAGAATTAGTTATGCTTATAAACTAGCAAGGGAAACAATAGTTTCT 240
Query 241 GAAATTTCAATCAGCATACCTGTGAATCCTCCTCATCCAGC-TAGGGCTACTCGCaaaaa 299
||||| || ||||| ||||||||||||||| ||| | || ||||||||||||||
Sbjct 241 GAAAT--CA----GCATATCTGTGAATCCTCCTCG-CCAACCTAAGGCTACTCGCAAAAC 293
Query 300 aaCTTGCAAAATCTGTTTAGGCGATGATATTAATGAGAATCAAATGTTTTGTGTTGATAA 359
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 294 AACTTGCAAAATCTGTTTAGATGATGATATTAATGAGAATCAGATGTTTTGTGTTGGTAA 353
Query 360 ATGTCGTCATCGATTTTGTTCCGAGTGTATGAAACGACATATAGAGGTGAGGTTACTCGA 419
||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct 354 GTGTCGTCATCGATTTTGTTCCGACTGTATGAGACGACATATAGAGGTGAGGCTACTCGA 413
Query 420 GGGAAGTGTAATGAGATGTCCTCATTATCGCTGCAAGTCTAAGCTGACTTTTGAAAGATG 479
||||||||||||||||||||||||||| ||||||||| ||| ||| | |||| | | ||
Sbjct 414 GGGAAGTGTAATGAGATGTCCTCATTACCGCTGCAAGACTACGCTAAAATTTGGAGGCTG 473
Query 480 TGA-AAATCTTTTGACACCTAAAGTAAGAGAGATGTGGCAACAAAGGATCAAAGAGGACT 538
| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 474 T-ATAAATCTTTTGACACCTAAAATAAGAGAGATGTGGCAACAAAGGATTAAAGAAGACT 532
Query 539 TAATTCCTGTAACAAAGAGAATTTACTGCCCAAACCCGAGGTGCCCGGCTTTAATGTCGG 598
|||| ||||||||| ||||||||||||||||||| || | ||| ||||||||||||| |
Sbjct 533 TAATCCCTGTAACAGGGAGAATTTACTGCCCAAACTCGCGATGCTCGGCTTTAATGTCAG 592
Query 599 AAACCGACCTCTCTATATCACCTAAAGAAGATGAAGTTAGGAGATGCTGCTTCAAATGCG 658
||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 593 AAACCGAGCTCTCTATATCAACTAAAGAAGATGAAGTTAGGAGATGTTGCTTCAAATGCG 652
Query 659 GTCAAATCTTTTGCATCAAATGCAAAGTTTCATGGCATAGTAACTTGTCGTGCGACGAAT 718
||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 653 GTCAAATCTTTTGCATCAAGTGTAAAGTTTCATGGCATAGTAACTTGTCGTGCAACGATT 712
Query 719 ACAAGAGGTTGCATCCATATCCTACAGAGAATGATGGAAAGATTAAAGCTCTGGCAAATC 778
|||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 713 ACAAGAAGTTGAATCCATACCCTACAGAAAATGATGGAAAGATTAAAGCTCTGGCAAATC 772
Query 779 AGAAAATGTGGCGTCAATGCAAAAAGTGTCAACACATGATTGAACTTTCTCAAGGATGCG 838
|||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 773 AGAAAAGGTGGCGTCAATGCGGAAAGTGTCAACACATGATTGAACTTTCTAAAGGATGCG 832
Query 839 TACAAGTAAAGTGCAGATGTGGACATAAGTTTTGCTACCGATGTGGAGTCCAGGCTGGAC 898
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 833 TACAAGTAAAGTGCAGATGTGGACATAAATTTTGCTACCGATGTGGAGTCCAGGCTGGAG 892
Query 899 GTTGCCAACATGGTCATGGTCTTCCTCCTAGGCCTCCACGGCCGCCAC 946
||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 893 GTTGCAAACATGGTCATGGTCTTCCTCCAAGGCCTCCACCGCCGCCAC 940
> AT3G45560.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:16719630-16722674 REVERSE LENGTH=1512
Length=1512
Score = 95.3 bits (51), Expect = 9e-19
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 15 TCATCATGATTCCACCATTACACCTTTGGAGGCTGAGCTTACCGCATTGAAGCGAGGACT 74
||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 138 TCATCATGACTCTGCCATAACAGTTTTGGAGGCTGAGCTTACCGCATTGAAGCGAGGACT 197
Query 75 AACCGAAGCTGT 86
|| |||||||||
Sbjct 198 AATCGAAGCTGT 209
> AT3G45500.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1);
Has 48 Blast hits to 46 proteins in 4 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:16688418-16689693 REVERSE LENGTH=606
Length=606
Score = 86.1 bits (46), Expect = 6e-16
Identities = 73/86 (85%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 770 TGGCAAATCAGAAAATGTGGCGTCAATGCAAAAAGTGTCAACACATGATTGAACTTTCTC 829
|||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 420 TGGCAAATCAGAAAATGTGGCGTCAATGTGGAAAGTGCCAACACATGACCGAACTTTCAG 479
Query 830 AAGGATGCGTACAA-GTAAAGTGCAG 854
|||||||| | ||| |||| |||||
Sbjct 480 AAGGATGCAT-CAAAGTAACTTGCAG 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46265649387
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5