BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484942
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45590.1 | Symbols: ATSEN1, SEN1 | splicing endonuclease 1 |... 1077 0.0
AT3G45577.1 | Symbols: | tRNA-intron endonucleases | chr3:1672... 512 2e-144
AT3G45600.1 | Symbols: TET3 | tetraspanin3 | chr3:16733755-1673... 137 1e-31
> AT3G45590.1 | Symbols: ATSEN1, SEN1 | splicing endonuclease 1
| chr3:16732594-16733854 FORWARD LENGTH=1002
Length=1002
Score = 1077 bits (583), Expect = 0.0
Identities = 738/812 (91%), Gaps = 14/812 (2%)
Strand=Plus/Plus
Query 1 AGAGACTCATCTATATGGCTCCAAGGTGGAAATGGAAAGGTGCTGAGGCAAAGGCGCTTG 60
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 196 AGAGACCCATCTCCATGGCACCAAGGTGGAAATGGAAAGGTGCTGAGGCAAAGGCACTTG 255
Query 61 CGGAACCTGTTTCGGAAACAGTCTTAGAGCTCCA-ATCTTCTTTTG-CTCAAACCGAGGC 118
| |||||||||||| ||||||||| ||||| | |||||| ||| | |||||||||||
Sbjct 256 CAGAACCTGTTTCGAAAACAGTCTCGGAGCT-GAGATCTTC-ATTGACCCAAACCGAGGC 313
Query 119 TTCCGGTTTCCTCTCAAGTTGTAACGTACTTCTATCGGTTGAGCCAGAGCAAGCTGATCT 178
|| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||
Sbjct 314 TTTAGGTTTCCTCTCAAGTTGTAACGTACTTTTATCGGTTGAGTCAGAGGAAGCTGAGCT 373
Query 179 TTTGGACCGTTGTTGTTTCGGTAGACCCGTTGTTAGTGTC-GAGAAAGATAAGAGATGGA 237
|||||| ||||||||||| ||||||| |||||| ||| | |||||||||||||||||||
Sbjct 374 TTTGGATCGTTGTTGTTTTGGTAGACTAGTTGTTGGTG-CTGAGAAAGATAAGAGATGGA 432
Query 238 TTCAATTATCCTTTGAAGAGGCTTTCTTTTTGTTCTACAAGCTGAAATGCGTCAAGATCT 297
|||| |||||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |
Sbjct 433 TTCAGTTATCCTTTGAAGAAGCTTTCTTTTTGTTTTACAAACTGAAATGCATCAAGATTT 492
Query 298 CCCTTCACGGTTGTTCCCTGGAAAACGAGGTAGATTTATGGAGATCCATGAGCTCCTTTA 357
|||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 493 GCCTTCACGGTCGTTCTCTGGAAAACGAGGTAGATTTATGGCGATCCATGAGTTCCTTTA 552
Query 358 AGCCAA-ATTTTGCTACATC-T-TACAAGGCTTATTCCCATCTACGATCGAAGAACTGGA 414
|| ||| ||||||| ||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 553 AG-CAAGATTTTGC--GATCTTGTACAAGGCTTATTCGCATCTACGATCGAAGAACTGGA 609
Query 415 TTGTGAGATCAGGGTTACAATATGGAGTTGATTTCGTGGTGTATAGACATCATCCATCTC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TTGTGAGATCAGGGTTACAATATGGAGTTGATTTCGTGGTGTATAGACATCATCCATCTC 669
Query 475 TTGTCCACTCTGAATACGCCGTCCTGGTTCAGTCCATTAGCGGGATTGATCGGTTAAAGG 534
|||||||||||||||||||||| || |||||||||||| |||||| ||||||||||||||
Sbjct 670 TTGTCCACTCTGAATACGCCGTTCTTGTTCAGTCCATTGGCGGGAATGATCGGTTAAAGG 729
Query 535 TATGGTCGGATATTCATTGCAGTGTTCGGCTAACCGGAAGTGTAGCGAAAACATTGTTGG 594
| ||||| ||||| |||||||||||||| ||||||||||| || |||||| |||||||||
Sbjct 730 TGTGGTCCGATATCCATTGCAGTGTTCGACTAACCGGAAGCGTCGCGAAATCATTGTTGG 789
Query 595 TTCTTTACGTCAATGGAATAGTCAAAACAGAGAATATGAATCTGCCTTTGTGTTTAGAGG 654
||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 790 TTCTTTACGTCAACAGAAAAGTCAACACAGAGAAGATGAATCTGCCTTTGTGTTTAGAGG 849
Query 655 ACTACATAGTGGAAGAGCAAACAATACGTAGATGGAGTCCAGAACTTAGCCGTGAAGATG 714
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 ACTACACAGTTGAAGAGCAAACAATACGTAGATGGAGTCCAGAACTTAGCCGTGAAGATG 909
Query 715 AAACCAGAACATGATTAAGCTTACGTTTTAACAATTGTATTGTTGTAATGCTGATTTCTA 774
|||||||||||||||||||||||| | ||||||| || |||||||||||||||||||||
Sbjct 910 AAACCAGAACATGATTAAGCTTACATGTTAACAA--GTCTTGTTGTAATGCTGATTTCTA 967
Query 775 GAGGAAGATAAAATGAACTAGGTTCTGATTCC 806
|| ||| |||||||||||||||||| ||||||
Sbjct 968 GAAGAATATAAAATGAACTAGGTTCCGATTCC 999
> AT3G45577.1 | Symbols: | tRNA-intron endonucleases | chr3:16728701-16729547
FORWARD LENGTH=847
Length=847
Score = 512 bits (277), Expect = 2e-144
Identities = 390/442 (88%), Gaps = 17/442 (4%)
Strand=Plus/Plus
Query 116 GGCTTCCGGTTTCCTCTCAAGTTGTAACGTACTTCTATCGGTTGAGCCAGAGCAAGCTGA 175
||||| |||||||||||||||||||||||| | | || | | |||||||||||||
Sbjct 278 GGCTTTAGGTTTCCTCTCAAGTTGTAACGTA--T-T-TC---T-A-TCAGAGCAAGCTGA 328
Query 176 TCTTTTGGACCGTTGTTGTTTCGGTAGACCCGTTGTTAGTGTCGAGAAAGATAAGAGATG 235
||||||||||||| |||||||||||||| ||| || ||| ||||||||||||||||||
Sbjct 329 GCTTTTGGACCGTTATTGTTTCGGTAGACTAGTTTTTGGTGCCGAGAAAGATAAGAGATG 388
Query 236 GATTCAATTATCCTT-TGAAGAGGCTTTCTTTTTGTTCTACAAGCTGAAATGCGTCAAGA 294
|||||| |||| ||| |||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct 389 GATTCAGTTAT-CTTATGAAGAAGCTTTCTTTTTGTTCTACAAACTGAAATGCATCAAGA 447
Query 295 TCTCCCTTCACGGTTGTTCCCTGGAAAACGAGGTAGATTTATGGAGATCCATGAGCTCCT 354
|||||||||||||| |||| |||| ||||| ||||||||||||| ||||||| || ||||
Sbjct 448 TCTCCCTTCACGGTCGTTCTCTGGTAAACGGGGTAGATTTATGGCGATCCATAAGATCCT 507
Query 355 TTAAGCCAAATTTTGCTAC-ATC-T-TACAAGGCTTATTCCCATCTACGATCGAAGAACT 411
|||||||||| ||| ||| ||| | ||||| |||||||| ||||||||||| |||||||
Sbjct 508 TTAAGCCAAA-TTT--TACGATCTTGTACAAAGCTTATTCGCATCTACGATCAAAGAACT 564
Query 412 GGATTGTGAGATCAGGGTTACAATATGGAGTTGATTTCGTGGTGTATAGACATCATCCAT 471
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 565 AGATTGTGAGATCAGGGTTACAATATGGAGTTGATTTCATGGTGTATAGACATCACCCAT 624
Query 472 CTCTTGTCCACTCTGAATACGCCGTCCTGGTTCAGTCCATTAGCGGGATTGATCGGTTAA 531
||||| ||||||||||| ||||||| || ||||||||||||||| ||| |||||||||||
Sbjct 625 CTCTTCTCCACTCTGAAAACGCCGTTCTTGTTCAGTCCATTAGCAGGAATGATCGGTTAA 684
Query 532 AGGTATGGTCGGATATTCATTG 553
|||| | |||||||||||||||
Sbjct 685 AGGTGTAGTCGGATATTCATTG 706
> AT3G45600.1 | Symbols: TET3 | tetraspanin3 | chr3:16733755-16735951
REVERSE LENGTH=1173
Length=1173
Score = 137 bits (74), Expect = 1e-31
Identities = 91/99 (92%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 708 GAAGATGAAACCAGAACATGATTAAGCTTACGTTTTAACAATTGTATTGTTGTAATGCTG 767
||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||
Sbjct 1173 GAAGATGAAACCAGAACATGATTAAGCTTACATGTTAACAA--GTCTTGTTGTAATGCTG 1116
Query 768 ATTTCTAGAGGAAGATAAAATGAACTAGGTTCTGATTCC 806
||||||||| ||| |||||||||||||||||| ||||||
Sbjct 1115 ATTTCTAGAAGAATATAAAATGAACTAGGTTCCGATTCC 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39232868807
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5