BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484945
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45610.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 1247 0.0
AT2G28510.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 150 2e-35
AT1G28310.2 | Symbols: | Dof-type zinc finger DNA-binding fami... 102 6e-21
> AT3G45610.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr3:16739289-16740445 REVERSE LENGTH=1072
Length=1072
Score = 1247 bits (675), Expect = 0.0
Identities = 872/961 (91%), Gaps = 37/961 (4%)
Strand=Plus/Plus
Query 13 TCTCTTT-TCT--TTCTCCTTCTACATTTCAAAGAAGTTTCTCAATTAGTGGAGATGGAT 69
||||||| ||| | |||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 41 TCTCTTTATCTCATACTCC-TCTACATTTCAAAGAAGTTTCTCAATTGGTTGAGATGGAT 99
Query 70 TATTCTTCGATGCACCAGAATGTCG-TTGGAGTATCTTCATGTTCATCACAAGATTTTCA 128
|||||||||||||| |||||||| | | |||||||||||||||||| ||||||||| |||
Sbjct 100 TATTCTTCGATGCATCAGAATGT-GATGGGAGTATCTTCATGTTCAACACAAGATTATCA 158
Query 129 GAACCAGAAGAAACCATCGTCGGCGACTAGGCCAGCTCCACCGGAGCAATCATTAAGATG 188
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 159 AAACCAGAAGAAACCATTGTCGGCGACTAGGCCAGCTCCACCAGAGCAATCATTAAGATG 218
Query 189 CCCTCGTTGTGACTCCACCAACACAAAGTTCTGCTACTACAACAACTACAGTCTCTCTCA 248
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 CCCTCGCTGTGACTCCACCAACACAAAGTTCTGCTACTACAACAACTACAGTCTCTCTCA 278
Query 249 GCCTCGCTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGCGGAATCTTAAGAAA 308
|||||||||||||||||||||||| ||||||| ||||| || || |||||| |||||||
Sbjct 279 ACCTCGCTACTTCTGCAAATCTTGTAGGAGATACTGGACCAAGGGTGGAATCCTAAGAAA 338
Query 309 CATCCCAATCGGTGGTGCTTACCGGAAACACAAACGCTCCTCTTCCGCAAGTAAAAGCCT 368
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 339 CATCCCAATCGGTGGTGCTTACCGGAAACACAAACGCTCCTCCTCCGCAACCAAAAGCCT 398
Query 369 CAGGACAACCCCTGAACCGACGGCAAGCCATGACGCCAGAA-CATTCTCGACGGGGAGTT 427
||| ||||||||||| || ||| | |||||||| || || ||||| | |||| |||||
Sbjct 399 CAGAACAACCCCTGAGCCCACGATGACCCATGACGGCA-AATCATTCCCAACGGCGAGTT 457
Query 428 TTGGCGGTTATAATAATAACATTAGCAATGAACAGATGGAGCTTGGGTTAGCATTTGCCT 487
||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 458 TTGGCTATAATAATAATAACATTAGCAACGAACAGATGGAGCTTGGGTTAGCATATGCCT 517
Query 488 TGTTGAACAAGCAACCTCTAGGGGTTTCTTCACATCTAGGGTTCGGAAGCTCTCAGTCTC 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TGTTGAACAAGCAACCTCTAGGGGTTTCTTCACATCTAGGGTTCGGAAGCTCTCAGTCTC 577
Query 548 CGATGGTCATGGATGGCGTGTATGGGACCACGAGCCAGCAGATGGAGAACGCGGGGTATG 607
| |||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 578 CAATGGCCATGGATGGCGTGTATGGGACCACGAGCCATCAGATGGAGAACACGGGGTATG 637
Query 608 CGTTTGGGAATGGTGGAGGCGGTCTGGAGCAGATGGCGACAAGTGATCCAAACAAGGTCT 667
||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 638 CGTTTGGAAATGGTGGAGGCGGTATGGAGCAGATGGCGACAAGTGATCCAAACAGGGTTT 697
Query 668 TGTGGGGATTCCCCTGGCAGATGAACATGGGAGGAGGAAGTGGTCATGGTCATGGTCATG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TGTGGGGATTCCCCTGGCAGATGAACATGGGAGGAGGAAGTGGTCATGGTCATGGTCATG 757
Query 728 TTGATCAGATTGATTCAGGGAGAGAGATTTGGAGCAGTACTGTCAACTACATTAATACTG 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TTGATCAGATTGATTCAGGGAGAGAGATTTGGAGCAGTACTGTCAACTACATTAATACTG 817
Query 788 GTGCTTTATTGTAGTTTGTTTATTT-AAAATTTTGGGTTTGATTAGGGTTTGGATTCTGG 846
||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||| |||
Sbjct 818 GTGCTTTATTGTAGTCTATTTATTTTAAAATTT-GGGTTTGATTAGGGTTTGGATTGTGG 876
Query 847 TCTTCTT--TT-G-G---GG--T--TA--A-T--GG--T----G--AAA-GAAAATAGAT 881
|| |||| || | | || | || | | || | | ||| ||||||||||
Sbjct 877 TCGTCTTGGTTAGAGAAAGGGATAATATGAGTTTGGGGTTAATGGTAAAAGAAAATAGAT 936
Query 882 ATGTTGTGCTTTCTTTAAAGATTTTCACTTACTTAG-AATATGAATTGTGtttttttttt 940
||||||||||||||||||||||||||| |||||| | || ||||||||||||||||| ||
Sbjct 937 ATGTTGTGCTTTCTTTAAAGATTTTCAGTTACTTGGGAA-ATGAATTGTGTTTTTTTGTT 995
Query 941 t 941
|
Sbjct 996 T 996
> AT2G28510.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr2:12199098-12200765 REVERSE LENGTH=1290
Length=1290
Score = 150 bits (81), Expect = 2e-35
Identities = 129/151 (85%), Gaps = 8/151 (5%)
Strand=Plus/Plus
Query 208 AACACAAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCTCGCTACTTCTGCAAA 267
||||||||||| || |||||||||||||| |||||||| || ||||| ||||||||||||
Sbjct 307 AACACAAAGTTTTGTTACTACAACAACTATAGTCTCTCACAACCTCGTTACTTCTGCAAA 366
Query 268 TCTTGTCGGAGATATTGGACTAAAGGCGGAA-TCTTAAGAAACAT-CCCAATCGGTGGTG 325
||||||||||||||||||||||||||||| | |||| | ||| | ||| |||||||||
Sbjct 367 TCTTGTCGGAGATATTGGACTAAAGGCGGTACTCTTC-GTAACGTTCCCG-TCGGTGGTG 424
Query 326 CTTACCG--GAAACACAAACGCTCCTCTTCC 354
|| ||| |||||| || || |||||||||
Sbjct 425 GTTGCCGTCGAAACA-AA-CGATCCTCTTCC 453
> AT1G28310.2 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:9911898-9913698 REVERSE LENGTH=1627
Length=1627
Score = 102 bits (55), Expect = 6e-21
Identities = 134/170 (79%), Gaps = 13/170 (8%)
Strand=Plus/Plus
Query 181 TTAAGATGCCCTCGTTGTGACTCCACCAACACAAAGTTCTGCTACTACAACAACTACAGT 240
|||| |||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 135 TTAA-ATGCCCTCGTTGCGATTCTTCCAACACAAAGTTCTGCTACTACAACAACTACAGC 193
Query 241 CTCTCTCAGCCTCG-CTACTTCTGCAAATCTTGTCG-GAGATATTGGACTAAAGGCGGAA 298
|||||||| || || | |||| ||||| |||| | ||| || ||||| | ||| || |
Sbjct 194 CTCTCTCAACCACGGC-ACTTTTGCAAGGCTTG-CAAGAGGTACTGGACGAGAGGTGGGA 251
Query 299 -TCTTAAGAAACAT-CCCAATCGGTGGT-GCTTACCGGAA-ACACAAACG 344
||| | ||| | | ||| | || ||| ||| ||||||| | |||||||
Sbjct 252 CTCTCAGGAA-CGTTCCCG-TAGGGGGTAGCT-ACCGGAAGA-ACAAACG 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5