BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484947
Length=3408
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 4927 0.0
AT5G60170.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 1129 0.0
> AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr3:16748174-16753833 REVERSE LENGTH=3555
Length=3555
Score = 4927 bits (2668), Expect = 0.0
Identities = 3196/3445 (93%), Gaps = 59/3445 (2%)
Strand=Plus/Plus
Query 1 TTGtctcttgcaatctcccacttctctcaatcttcttcttcttcttccacaatctcCGAT 60
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 15 TTGTCTCTTGCAATCTCCCACTTCTCTCAA---TCTTCTTCATCTTCCACAATCTCCGAT 71
Query 61 CGAATCTCCT-TACTCAGCCGaaaaaaaTGAGTGATTACGGTGAAAAGACTTGCCCTTTG 119
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 CGAATCT-CTCTACTCAGCCGAAAAAAATGAGTGATTACGGTGAAAAGACTTGCCCTTTG 130
Query 120 TGTGCAGAGGAGATGGATTTGACTGACCAGCAATTGAAGCCTTGCAAATGTGGCTATCAG 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TGTGCTGAGGAGATGGATTTGACTGACCAGCAATTGAAGCCTTGCAAATGTGGCTATCAG 190
Query 180 ATTTGTGTTTGGTGCTGGCACCACATAATGGACATGGCAGAGAAAGATCAATCAGAAGGG 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 191 ATTTGTGTTTGGTGCTGGCACCATATAATGGACATGGCAGAGAAAGATCAATCAGAAGGG 250
Query 240 CGCTGTCCAGCTTGCCGTACTCCATATGATAAAGAAAAGATTGTTGGGATGACCGTTGAT 299
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 251 CGCTGTCCAGCTTGCCGCACTCCATATGACAAAGAAAAGATTGTTGGGATGACTGTTGAT 310
Query 300 CAAGAGAGACTGACCTCTGAAGGCAACATGGATCGCaaaaaaaCACAAAAGTCAAAATTG 359
|| ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 311 CAGGAGAGACTGGCCTCTGAAGGCAACATGGATCGCAAAAAAATACAAAAGTCGAAACCG 370
Query 360 AAATCTTCTGAAGGGAGAAAGCCACTAACAAGTGTCCGAGTGGTTCGAAGAAATCTTGTT 419
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 371 AAATCTTCTGATGGGAGAAAGCCACTAACAAGTGTCCGAGTGGTTCAAAGAAATCTTGTT 430
Query 420 TACATTGTTGGGTTGCCCCTTAATCTAGCAGATGAAGATCTTCCCCAGCGTAATGAGTAT 479
||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 431 TACATTGTTGGATTGCCCCTTAATCTAGCAGATGAAGATCTTCTCCAGCGTAAAGAATAT 490
Query 480 TTTGGTCAGTATGGAAAGGTTCTAAAGGTTTCCATGTCCCGAACAGCAACAGGTCTCATC 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 491 TTTGGTCAGTATGGAAAGGTTCTAAAGGTTTCGATGTCCCGAACAGCAACAGGTCTCATC 550
Query 540 CAACAGTTCCCTAACAACACATGCAGTGTATATATCACTTATGGCAAAGAGGAAGAGGCT 599
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 551 CAACAGTTTCCTAACAACACATGCAGTGTATACATCACATATGGCAAAGAGGAAGAGGCC 610
Query 600 GTTCGATGTATTCAATCTGTCCATGGGTTTATCTTGGATGGTAAAGCACTGAAGGCATGT 659
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 611 ATTCGATGTATTCAGTCTGTTCATGGGTTTATCTTGGATGGTAAAGCACTGAAGGCATGT 670
Query 660 TTTGGGACAACAAAGTATTGTCATGCATGGTTAAGAAACGCGACATGCAACAATCCTGAT 719
||||||||||| |||||||| ||||||||||| ||||||| | |||||||||||| |||
Sbjct 671 TTTGGGACAACCAAGTATTGCCATGCATGGTTGAGAAACGTGGCATGCAACAATCAGGAT 730
Query 720 TGCCTCTATTTGCATGAGGTTGGCTCTCAAGAGGATAGTTTTACAAAAGATGAGATCATA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TGCCTCTATTTGCATGAGGTTGGCTCTCAAGAGGATAGTTTTACAAAAGATGAGATCATA 790
Query 780 TCAGCCTATACAAGGGTTCAGCAAATCACTGGAGCAACAAATACTATGCAATACCGTTCA 839
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TCAGCCCATACAAGAGTTCAGCAAATCACTGGAGCAACAAATACTATGCAATACCGTTCA 850
Query 840 GGGAGCATGCTACCTCCACCATTGGATGCTTATGGCAGTGACAGTTCTACTGCG-AATCC 898
||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 851 GGGAGCATGCTACCTCCACCATTGGATGCTTATACCAGTGACAGTTCTACTG-GAAATCC 909
Query 899 AATTGCAAAAGTTCCTTCTACTACTTCAGTTAGTGCTCCTAGGAGTTCTCCACCTAGTGG 958
|||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 910 AATTGCAAAAGTTCCTTCTAGTACTTCAGTTAGTGCTCCTAAGAGTTCCCCACCTAGTGG 969
Query 959 GAGCTCTGGTAAATCAACTGCGCTTCCTGCTGCAGCATCATGGGGGGCACGTTTAACAAA 1018
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 970 GAGCTCGGGTAAATCAACTGCTCTTCCTGCTGCAGCATCATGGGGGGCACGTTTAACAAA 1029
Query 1019 TCAACACTCTTTAGCAACTTCAGCTTTGTCAAATGGATCTTTGGATAATCAAAGATCAAC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TCAACACTCTTTAGCAACTTCAGCTTTGTCAAATGGATCTTTGGATAATCAAAGATCAAC 1089
Query 1079 ATCAGAGAATGGAACTTTGGCTATGTCTACAGTTGTTGCAAATGCAGCTCATGGGCCTGT 1138
||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||
Sbjct 1090 ATCAGAGAATGGAACTTTGGCTACGTCTACAGTTGTTACAAAGGCAGCTAATGGGCCTGT 1149
Query 1139 AACCTCTAGTAACACTCTTCAGAAACCACCTCTTAAGGAAGAAATTCAAACATTGGCTGA 1198
| |||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct 1150 ATCCTCTAGTAACAGTCTTCAGAAAGCACCTCTCAAGGAAGAAATTCAATCATTGGCTGA 1209
Query 1199 AAAAAGCAATCCTAGCGTGTTTAAGCCTTTGCAGCAGAAGATTGTGTTGGATTCTGGGTC 1258
||||||||| ||| | ||||| |||||||||||||||||||||||||||||| | | |||
Sbjct 1210 AAAAAGCAAACCTGGTGTGTTGAAGCCTTTGCAGCAGAAGATTGTGTTGGATCCCGAGTC 1269
Query 1259 CAAGAGAACTACATCACCTAATAGAGATCCTAGTAGCAATCAGATATCCTGTTTAGAAGA 1318
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1270 CAAGAGAACTACATCACCTAATAGAGACCCTAGTAGCAATCAGATATCCTGTTTAGTAGA 1329
Query 1319 ATCTTCCTACAATAGCAGAGTCATTGACAAGCCTTCTGCTGTTGAGAATTCTTTTGAACA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1330 GTCTTCCTACAATAGCAGAGTCATTGACAAGCCTTCTGCTGTTGAGAATTCTCTTGAACA 1389
Query 1379 CACAAATGAAATTGCTGAAGATTTCCTCGATGTTAGTAACTTGTCGGCTGATGTTGCATG 1438
||||| |||||||||||||||| || |||||||| |||| ||||| ||||||||||||||
Sbjct 1390 CACAAGTGAAATTGCTGAAGATGTCTTCGATGTTGGTAAATTGTCTGCTGATGTTGCATG 1449
Query 1439 GATGGGGATAACTACAAATTCTAGGGATGAAGCTCCTGGTGTTCCAGTGGCTATTGGTAC 1498
||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |||||
Sbjct 1450 GATGGGGATAACTACAAATTCTAGGGATGAAACCCCTGGTGTTCCAGTGGTTATCGGTAC 1509
Query 1499 TCATTGTGATCAAGGTTCTATTAGACAACCTGATAACTATGTACAAAATCTTGAGCGATG 1558
||||||||||| |||||||||| |||| |||||||| ||||||||||||| |||| |||
Sbjct 1510 TCATTGTGATCTTGGTTCTATTACACAATCTGATAACGATGTACAAAATCTCGAGCAATG 1569
Query 1559 TAGAAAAGATTCTCCTACAACCACTTATGCAGAAGCTGGCATATCACAGAATGGGATTCA 1618
||||||| | |||||||||| ||||||||||||||||| |||||||| |||||| |||||
Sbjct 1570 TAGAAAACAGTCTCCTACAAACACTTATGCAGAAGCTGACATATCACTGAATGGAATTCA 1629
Query 1619 TGGTTCAAGGCCAGAGTGGGATTGGAGATCAGGTTCGCAATCCCAGATAGATGTCAAGGC 1678
|||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1630 TGGTTCAAGGCCTGAGTGGGATTGGAGATCAGGTTTGCAATCCCAGATAGATGTTAAGGA 1689
Query 1679 ACAGGTGGATGTCAATGATTCCTCATCATTCAATAACAATA-AGCG-GGTTGTTGCAGAG 1736
|| | |||| |||||||||| |||||||||||||||||| | | || ||| ||||||||
Sbjct 1690 ACCGTTGGAAGTCAATGATTTCTCATCATTCAATAACAACAGA-CGTGGTA-TTGCAGAG 1747
Query 1737 GCTGTTAGCCACTCCACTTATATGTTTAGTTCATCAAGCTCAATTCTGGATTCAAATCAT 1796
|||||||||||||| |||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 1748 GCTGTTAGCCACTCGACTTCTAAGTTTAGTTCATCAATCTCAATTCTGGATTCAAATCAT 1807
Query 1797 CTAGCTTCTCGTTCTTTCCAGACCCGGGAAACTTCTGGTGGGATGGATTCAAATACTGGA 1856
|||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||
Sbjct 1808 CTAGCTTCTCGTTCGTTCCAGAACCGGGAAACTTCTTGTGGGATGGATTCAAAAACTGGA 1867
Query 1857 TCCACCTTTGAAATAGGTAGCGATAGTTTGCATCTTCCAAATGGATTTTCTGAGAAAGCC 1916
||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1868 TCCTCCTTTGAAATAGGTAGTGATAGATTGCATCTTCCAAATGGATTTTCTGAGAAAGCT 1927
Query 1917 ATATCCAATATGGAGCATTCATTATTTGCTAATGAAGGCAGGAGCAACATTCAGAATGCA 1976
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1928 ATGTCCAATATGGAGCATTCATTATTTGCTAATGAAGGCAGAAGCAACATTCAGAATACA 1987
Query 1977 GAGGATGATATAATTTCGAACATTTTAGACTTTGATCCCTGGGATGAATCCTTGACTTCG 2036
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1988 GAGGATGATATCATTTCAAACATTTTAGACTTTGATCCCTGGGATGAATCGTTGACTTCG 2047
Query 2037 CCACACAATTTTGCAAAATTACTTGGCCAGAGTGATCATAGGGCTAGTACTCTGGAATCT 2096
| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2048 CAACACAATTTTGCAAAATTACTTGGTCAGAGTGATCATAGGGCCAGTACTCTGGAATCT 2107
Query 2097 TCTAACCTCCTAAAGCAACATAATGACCAGTCCAGATTCTCTTTTGCTCGGCATGAAGAA 2156
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2108 TCTAACCTCCTAAAGCAACATAATGACCAGTCTAGGTTCTCTTTTGCTCGGCATGAAGAA 2167
Query 2157 TCAAATAATCAAGCGTATGACAATAAAAGTTACAGCATATATGGGCAGTTGTCAAGAGAT 2216
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2168 TCAAATAGTCAAGCGTATGACAATAGAAGTTACAGCATATATGGGCAGTTGTCAAGAGAT 2227
Query 2217 CAGCCTCTTCAGGAGTTTGGAGTGAACCGTGATATGTATCAGGATAAGCTCGGCAGTCAA 2276
||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 2228 CAGCCTCTTCAAGAGTTTGGAGCGAACCGTGATATGTATCAGGATAAGCTTGGCAGTCAA 2287
Query 2277 AATGGTTTTGCCTCAAATTATTCTGGCGGATATGAACAATTTGCTGCTAGTCCTGGATTA 2336
||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||
Sbjct 2288 AATGGTTTTGCCTCAAACTATTCCGGTGGATATGAACAATTTGCTACTAGTCCTGGATTA 2347
Query 2337 TCTTCTTACAAGAGTCCTGTGGCGAGGACTCAAGTTTCTGCTCCTCCTGGATTTTCTGCT 2396
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2348 TCTTCTTACAAGAGTCCTGTGGCGAGGACTCAAGTTTCTGCTCCTCCCGGATTTTCTGCT 2407
Query 2397 CCCAACAGGTTACCTCCTCCGGGTTTCTCTTCACATGAAAGAGCCGACCTGTCTTCTGAT 2456
|||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct 2408 CCCAACAGGTTACCTCCTCCCGGTTTCTCTTCACATCAAAGAGGCGACCTGTCTTCTGAT 2467
Query 2457 ATTGCATCAGGAACTCGTTTACTTGACTCAGCCAATTTGTTGAGGAACGCATATCATGTA 2516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2468 ATTGCATCAGGAACTCGTTTACTTGACTCAGCCAATTTGTTGAGGAACGCATATCATGTA 2527
Query 2517 CCCCCTCCAAGTGGAAATTTGAATGCTGCAGGAGATATTGAGTTTATTGATCCTGCAATT 2576
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2528 CCACCTCCAAGTGGAAATTTGAATGCTGCAGGAGATATTGAGTTTATTGATCCTGCAATT 2587
Query 2577 TTAGCTGTTGGAAGGGGAAGACTTCACAATGGGATGGAAACAGCAGATTTTGATATGAGA 2636
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 2588 TTAGCTGTTGGAAGGGGAAGACTTCATAATGGGATGGAAACAGCAGACTTTGATTTGAGA 2647
Query 2637 TCAGGGTTCTCTTCTCAGCTGAATTCATTTGAGAACGATGCAAGACTTCAATTGTTGGCG 2696
||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||
Sbjct 2648 TCAGGGTTCTCTTCTCAACTGAATTCATTTGATAATGATGCAAGACTCCAATTGTTGGCG 2707
Query 2697 CAGAGGTCTCTGGCTGCACAGCAAGTTAATGGATTTCACGATCCCAGGAACGTTAACAAC 2756
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 2708 CAGAGGTCTCTGGCTGCACAACAAGTCAATGGATTTCACGATCCCAGGAACGTAAACAAC 2767
Query 2757 TTTTCTTCTCCACTCTCTGACCCATATGGGATTATTAGTTCGAGGCTAATGGATCAAACA 2816
|| |||||| | ||||||||||||||||||||| | ||||||| || ||||||||||
Sbjct 2768 TTCTCTTCTTCGTTCTCTGACCCATATGGGATTA---GCTCGAGGCCAACGGATCAAACA 2824
Query 2817 CAAGGAGCTGGTTTATCTCCTTTCACACAGTTGCCTAGACAAGCTTCACCAAATCCATTG 2876
|||||| |||| || ||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2825 CAAGGAACTGGCTTGTCTCCTTTCACACAGCTGCCTAGACAAGCTTCAGCAAATCCATTG 2884
Query 2877 TTGTCAAATGGACACTGGGATAA---GTGGAATGAACCCCAAAGTGGTAACAATCTTGGG 2933
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2885 TTGTCAAATGGACACTGGGATAATAAGTGGAATGAACCACAAAGTGGTAACAATCTTGGG 2944
Query 2934 ATTGCCCAGCTTCTAAGGAATGAACGGATGGGTTTTAATGACAACGCCTACAGCCGTTTT 2993
||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2945 ATTACCCAGCTTCTAAGGAATGAACGGATGGGTTTTAATGACAACGTTTACAGCGGTTTT 3004
Query 2994 GAAGAGCCTAAATTCCGGAGGCCCAGTCCTGGAGATCCGTACAACAGAACATACGGGATA 3053
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 3005 GAAGAGCCTAAATTCCGGAGGCCCGGTCCTGGAGATCCGTATAACAGAACATACGGGATT 3064
Query 3054 TGATTCTCAGAATTCTGATTTGGTTGGATTTTCTCTCAAGACCGTCTCAAAAGAAGGATT 3113
|||||||| ||||||| || |||||||||||| || ||||| |||||||||||||||||
Sbjct 3065 TGATTCTCGGAATTCTTCTT-GGTTGGATTTTCACTTAAGACTGTCTCAAAAGAAGGATT 3123
Query 3114 GTTGTTTGGCTGATTCCAGTGTTGGAAGAATCATAGTTGAAACTGCTCTGCCTATTAGCC 3173
|| || |||||||||| ||||||| ||| ||||||| |||||||||||||||||| |||
Sbjct 3124 -TT-TT-GGCTGATTCCGGTGTTGGGAGATTCATAGTCGAAACTGCTCTGCCTATTTGCC 3180
Query 3174 CATATCATACCAGACCTTCGAATCAACAATCGCAA-TATTGGCTCCCCCAAAGCAGTTTT 3232
||||||| |||||||||| || ||||||| ||||| ||| |||||| ||||||||||||
Sbjct 3181 CATATCAAACCAGACCTTAGAGTCAACAACCGCAAATATCGGCTCCTCCAAAGCAGTTTA 3240
Query 3233 AACTCTCAATTGGAGGACAACCTTAC-CATGTTGGCTTTGTATCAGCAAAAATTTGATGC 3291
||||| |||||||||| | |||||| | |||||||||||||||||||||| ||||||||
Sbjct 3241 AACTC--AATTGGAGGATA-CCTTACTC-TGTTGGCTTTGTATCAGCAAAAGTTTGATGC 3296
Query 3292 TTCAG-----A------A----G--G-TAATTTTGATCTACATTTGCATACTGTATAAGG 3333
||||| | | | | | |||||| |||||||||||||||| |||||||
Sbjct 3297 TTCAGTGCCTACTCTTGATTCAGAAGGTGATTTTGGTCTACATTTGCATACTATATAAGG 3356
Query 3334 CTGAACTACTGGAAAAA-TCTGGCTC---G-T---T--ACCATTTGTATAGATGAGCCTA 3383
|||||||| |||||||| | |||| | | | | |||||||||||||| | | ||
Sbjct 3357 CTGAACTAGTGGAAAAAAT-TGGCGCTATGGTGCATTTACCATTTGTATAGA-G--CTTA 3412
Query 3384 CAAGAACAATATCAGTCTATGCTTT 3408
||||||| ||||||||||||||||
Sbjct 3413 CAAGAACTGTATCAGTCTATGCTTT 3437
> AT5G60170.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:24227415-24232873 FORWARD LENGTH=3509
Length=3509
Score = 1129 bits (611), Expect = 0.0
Identities = 1080/1299 (83%), Gaps = 62/1299 (5%)
Strand=Plus/Plus
Query 87 ATGAGTGATTACGGTGAAAAGACTTG-CC-CTTTGTGTGCAGAGGAGATGGATTTGACTG 144
|||||||| | ||||| |||||||| || | || ||||| || ||||||||| ||||||
Sbjct 145 ATGAGTGACCATGGTGAGAAGACTTGTCCAC-TT-TGTGCTGAAGAGATGGATCTGACTG 202
Query 145 ACCAGCAATTGAAGCCTTGCAAATGTGGCTATCAGATTTGTGTTTGGTGCTGGCACCACA 204
| || ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 203 ATCAACAATTGAAGCCTTGCAAATGTGGTTATCAGATTTGTGTTTGGTGCTGGCATCACA 262
Query 205 TAATGGACATGGCAGAGAAAGATC-AATCAGAAGGGCGCTGTCCAGCTTGCCGTACTCCA 263
|| ||||||||||||||||||||| ||| ||||||||| ||||||||||| || ||||||
Sbjct 263 TAGTGGACATGGCAGAGAAAGATCAAAT-AGAAGGGCGTTGTCCAGCTTGTCGCACTCCA 321
Query 264 TATGATAAAGAAAAGATTGTTGGGATGACCGTTGATCAAGAGAGACTGACCTCTGAAGGC 323
||||| |||||||||||||| |||||||| ||| || || || ||| | |||||||||
Sbjct 322 TATGACAAAGAAAAGATTGTAGGGATGACTGTTAATTGTGACAGTCTGGCTTCTGAAGGC 381
Query 324 AACATGGATCGCaa-aaaaaCACAAAAGTCAAAATTGAAATCTTCTGAAGGGAGAAAGC- 381
|| ||||| ||||| || | | || |||||||||| ||||||||||||||||||||||
Sbjct 382 AATATGGAGCGCAAGAAGATC-CAGAAGTCAAAATCAAAATCTTCTGAAGGGAGAAAGCA 440
Query 382 -C-ACTAACAAGTGTCCGAGTGGTTCGA-AGAAATCTTGTTTACATTGTTGGGTTGCCCC 438
| ||| || ||||| ||||| | || | || |||||||||||||||||||||||||| |
Sbjct 441 ACAACTCACCAGTGTGCGAGT-GATCCAGAGGAATCTTGTTTACATTGTTGGGTTGCCTC 499
Query 439 TTAATCTAGCAGATGAAGATCTTCCCCAGCGTAATGAGTATTTTGGTCAGTATGGAAAGG 498
|||||||||| ||||||||||| | ||| | ||| || |||||||||||||||||||| |
Sbjct 500 TTAATCTAGCCGATGAAGATCTACTCCAACATAAAGAATATTTTGGTCAGTATGGAAAAG 559
Query 499 TTCTAAAGGTTTCCATGTCCCGAACAGCAACAGGTCTCATCCAACAGTTCCCTAACAACA 558
||||||||||||||||||||||||||||| | ||| |||||||||| ||||| ||||| |
Sbjct 560 TTCTAAAGGTTTCCATGTCCCGAACAGCATCTGGTGTCATCCAACAATTCCCAAACAATA 619
Query 559 CATGCAGTGTATATATCACTTATGGCAAAGAGGAAGAGGCTGTTCGATGTATTCAATCTG 618
|||||||||||||||| |||||||| |||||||||||||||||||| || |||||| |||
Sbjct 620 CATGCAGTGTATATATTACTTATGGAAAAGAGGAAGAGGCTGTTCGCTGCATTCAAGCTG 679
Query 619 TCCATGGGTTTATCTTGGATGGTAAAGCACTGAAGGCATGTTTTGGGACAACAAAGTATT 678
| |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 680 TTCATGGGTTTATCTTGGATGGTAAACCATTGAAGGCATGTTTTGGGACAACCAAGTATT 739
Query 679 GTCATGCATGGTTAAGAAACGCGACATGCAACAATCCTGATTGCCTCTATTTGCATGAGG 738
||||||||||| | ||||| | | ||||| |||||||||||| ||||||||||| ||||
Sbjct 740 GTCATGCATGGCTGAGAAATGTGGCATGCGTCAATCCTGATTGTCTCTATTTGCACGAGG 799
Query 739 TTGGCTCTCAAGAGGATAGTTTTACAAAAGATGAGATCATATCAGCCTATACAAGG-GT- 796
|||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 800 TTGGTTCTCAAGATGATAGCTTCACAAAAGATGAGATCATATCAGCCTATACAAGGAGTA 859
Query 797 ---T-CAGCAAATCACTGGAGCAACAAATACTATGCAATACCGTTCAGGGAGCATGCTAC 852
| || |||||||||||||||||||||| | |||| ||| |||||||| ||||||||
Sbjct 860 GAGTTCAACAAATCACTGGAGCAACAAATATTCTGCAGCACCATTCAGGGAACATGCTAC 919
Query 853 CTCCACCATTGGATGCTTATGGCAGTGACAGTTCTACTGCGAATCCAATTGCAAAAGTTC 912
|||||||| ||||||||||| |||||||||||||| |||| || |||||| ||| ||||
Sbjct 920 CTCCACCACTGGATGCTTATTGCAGTGACAGTTCTTCTGCAAAACCAATTATAAAGGTTC 979
Query 913 CTTCTACTACTTCAGTTAGTGCTCCTAGG-AGTTCTCCACC---T---AGTGGGAGCTCT 965
|||| |||| | || ||||| ||| ||| | |||||| || | |||||||||||
Sbjct 980 CTTCAACTAATGCAACTAGTGTTCCCAGGTA-TTCTCCGCCAAGTGGGAGTGGGAGCTCC 1038
Query 966 GGTAAATCAACTGCGCTTCCTGCTGCAGCATCATGGGGGGCACGTTTAACAAATCAACAC 1025
| | ||| ||||| |||||||||||||| ||||||||| || | || |||
Sbjct 1039 AGCAGATCCACTGCCCTTCCTGCTGCAGCGTCATGGGGG--AC----A-CA--TCAG--- 1086
Query 1026 TCTTTAGCAACTTCAG-CTTTGTCAAATGGATCTT-TGGATA-ATCAAAGATCAACATCA 1082
|||||||||||||| | | ||||||||||||| || ||| | |||||||||||||||
Sbjct 1087 TCTTTAGCAACTTCGGTCACC-TCAAATGGATCTTCTG-ATATA-CAAAGATCAACATCA 1143
Query 1083 GAGAATGGAACTTTGGC-TATGTCTACAGTTGTTGCAAATGCAGCTCATGGGCCTGTAAC 1141
| ||||||||| || | | | ||| | ||||||||||| |||||||||||||||||| |
Sbjct 1144 GTGAATGGAACCTTACCCTTT-TCTGCTGTTGTTGCAAACGCAGCTCATGGGCCTGTATC 1202
Query 1142 CTCTAGTAACACTCTTCAGAA-ACCACCTCTTAAGGAAGAAATTCAAACA-TTGGCTGAA 1199
||||| | ||| |||| | || |||| ||| || ||||||| |||| | || || |
Sbjct 1203 CTCTAATGACATTCTTAA-AAGACCATCTCGCAAAGAAGAAAGCCAAATAGTTA--TGGA 1259
Query 1200 AAAAG-CAATCCTAGCGTGTTTAAGCCTTTGCAGCAGAA-GATTGTGTTGGATTCTGGGT 1257
|||| ||| ||||| ||||| ||||| |||||||| || | ||||| | ||||||||
Sbjct 1260 CAAAGTCAAACCTAGTGTGTTGAAGCCCTTGCAGCATAATG-TTGTGGT---TTCTGGGT 1315
Query 1258 CCAAGAGAACTACATCACCTAATAGAGATCCTAGTAGCAATCAGAT-ATCCTGTTTAGAA 1316
|| |||||| ||| |||| |||||||||||| |||||||| | | |||| ||| || |
Sbjct 1316 CCGAGAGAATTACCGCACCCGATAGAGATCCTACTAGCAATC-GTTTATCCAGTTCAGTA 1374
Query 1317 GAATCTTCCTACAATAG-CAGAGTCATTGACAAGCCTTC 1354
|| ||| ||||| || ||||| ||||||| |||||||
Sbjct 1375 GACTCTGCCTACGG-AGGCAGAGACATTGACCAGCCTTC 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169614434283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5