BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484952
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23660.1 | Symbols: MTN3, SWEET12, AtSWEET12 | homolog of Me... 1746 0.0
AT3G48740.1 | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family... 739 0.0
> AT5G23660.1 | Symbols: MTN3, SWEET12, AtSWEET12 | homolog of
Medicago truncatula MTN3 | chr5:7971651-7973925 REVERSE LENGTH=1272
Length=1272
Score = 1746 bits (945), Expect = 0.0
Identities = 1135/1225 (93%), Gaps = 19/1225 (2%)
Strand=Plus/Plus
Query 33 TCTTTCTTACTTCGAAGAAATCTTCTTCCCCCTT-C-Gaaaaa-aaT-CCTAAACCCGGA 88
|||| | ||||||||||||||||||||| ||||| | ||||| ||| ||||||||||||
Sbjct 54 TCTTAC-TACTTCGAAGAAATCTTCTTCTCCCTTCCAAAAAAACAATCCCTAAACCCGGA 112
Query 89 ACCAAAGATCGACATTCATGGCTCTCTTCGACACTCATAACACATGGGCCTTTGTTTTCG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 ACCAAAGATCGACATTCATGGCTCTCTTCGACACTCATAACACATGGGCCTTTGTTTTCG 172
Query 149 GCTTGCTCGGAAACCTCATTTCCTTTGCTGTTTTCCTCTCTCCCGTGCCAACGTTCTACA 208
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 173 GCTTGCTCGGAAACCTCATTTCCTTTGCTGTTTTCCTCTCTCCCGTGCCAACGTTCTATA 232
Query 209 GGATTTGTAAGAAGAAAACCACAGAAGGATTTCAATCTATTCCCTACCTGGTGGCGCTAT 268
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 233 GGATTTGTAAGAAGAAAACCACAGAAGGATTTCAATCTATTCCCTATGTGGTGGCGCTCT 292
Query 269 TCAGCGCGATGCTTTGGCTCTACTACGCTACTCAGAAGAAAGATGTCTTCCTTCTCGTCA 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TCAGCGCGATGCTTTGGCTCTACTACGCTACTCAGAAGAAAGATGTCTTCCTTCTCGTCA 352
Query 329 CCATCAACAGCTTTGGTTGTTTCATTGAAACCATATACATCTCCATCTTCGTTGCCTTCG 388
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 353 CCATCAACAGCTTTGGTTGCTTCATTGAAACCATATACATCTCCATCTTTGTTGCCTTCG 412
Query 389 CATCCAAGAAAGCTCGAATGCTCACGGTGAAGCTGTTGTTGCTAATGAACTTTGGAGGAT 448
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 413 CATCCAAGAAAGCCCGAATGCTAACGGTGAAGCTCTTGTTGCTAATGAACTTTGGAGGGT 472
Query 449 TCTGTTTGATTCTCCTCCTCTGCCAATTCTTGGCCAAAGGAACCACACGTGCCAAGATCA 508
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 473 TCTGTTTGATTCTCCTCCTCTGCCAATTCTTGGCAAAAGGAACCACACGTGCGAAGATCA 532
Query 509 TTGGAGGAATCTGTGTCGGATTCTCTGTCTGCGTTTTCGCTGCGCCGCTTAGCATTATCA 568
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 533 TTGGAGGTATCTGTGTCGGATTCTCTGTCTGCGTTTTTGCTGCGCCGCTTAGCATTATCA 592
Query 569 GAACGGTGATAAAGACGAAAAGTGTTGAGTACATGCCGTTTAGCTTATCCTTGACTCTTA 628
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 593 GAACGGTGATAAAGACGAAAAGTGTGGAGTACATGCCGTTTAGCTTATCCTTGACTCTTA 652
Query 629 CCATCAGTGCGGTCATATGGCTCCTTTATGGTCTTGCTCTTAAGGATATCTATGTTGCCT 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CCATCAGTGCGGTCATATGGCTCCTTTATGGTCTTGCTCTTAAGGATATCTATGTTGCCT 712
Query 689 TCCCTAACGTGATTGGGTTTGTTCTCGGTGCACTTCAAATGATACTTTACGTGGTTTACA 748
|||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 713 TCCCAAACGTGATTGGGTTTGTTCTAGGTGCACTTCAAATGATACTCTATGTGGTTTACA 772
Query 749 AATACTGCAAAACGCCGTCGGATTTGGTTGAAAAAGAACTCGAAGCCGCGAAATTGCCGG 808
||||||||||||||||||||||||||||||| |||||||| || || ||||||||||| |
Sbjct 773 AATACTGCAAAACGCCGTCGGATTTGGTTGAGAAAGAACTTGAGGCTGCGAAATTGCCAG 832
Query 809 AAGTGAGCATTGATATGCTGAAGTTAGGTACACTGACATCTCCTGAACCAGCAGCGATCA 868
|||||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 833 AAGTGAGCATCGATATGGTGAAGTTAGGTACACTCACATCTCCTGAACCAGTAGCGATCA 892
Query 869 CAGTCGTCCGATCCGTGAACACGTGTAACTGTAACGATCGAAAGGCTGAGATTGAAAATG 928
| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 893 CCGTCGTCCGATCGGTGAACACATGTAACTGTAACGATCGAAATGCTGAGATTGAAAATG 952
Query 929 GTCTGGGAGTTAGAAACAGTGCAACTGCTACTTGAGTTAGCCCT-GTAT---TATTAAGA 984
||| |||||||||||||||||| | ||||||||||| |||| | | || |||||
Sbjct 953 GTCAGGGAGTTAGAAACAGTGCTGCAACTACTTGAGTTTGCCCAAGAAACCCTAATAAGA 1012
Query 985 AACCTATTTGTTGACTATTTTGACTTTGTACCCTTCTTGATATACCCACCCATCACCAGC 1044
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1013 AACCTATTTGTTGACTATTTTGACTTTGTACCCTTCTTGATATACCTATCAATCACCATT 1072
Query 1045 ATCCACGTGTACTCA-TTTCGCTATCGTAATTTTCTGAGTTTATCAAAGTGTGCGAAGTC 1103
|||||||||||| | ||||| | | ||||||||| |||||||| |||| |||| | ||
Sbjct 1073 GTCCACGTGTACT-AGTTTCGTTGTAGTAATTTTCAAAGTTTATCGAAGTATGCGTATTC 1131
Query 1104 GAGGATTAATTAA-TCGGGAAATACATTTTCCTGAGTTAATTTTTTCTCTTCTTCTTTTA 1162
||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1132 GAGGATTAATTAAATCGGGAATTACATTTTCCTGAGTTAATTTTTTCTCTTTTTCTTTTA 1191
Query 1163 ATTATTGGATAATGTAATTAAATTATCTGTTGGATATAAATATTTCTTATTTTCCAAGTT 1222
|||| ||| |||||||| ||| ||||||||| |||||||||||| | |||||||
Sbjct 1192 CTTATGGGACAATGTAATGAAACTATCTGTTGCATATAAATATTT-T------CCAAGTT 1244
Query 1223 GAAAAGAATTTGAAATTTCTCAAGC 1247
|||||||| ||||| |||||||||
Sbjct 1245 GAAAAGAAAATGAAAATTCTCAAGC 1269
> AT3G48740.1 | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family
protein | chr3:18052466-18054755 REVERSE LENGTH=1310
Length=1310
Score = 739 bits (400), Expect = 0.0
Identities = 690/829 (83%), Gaps = 23/829 (3%)
Strand=Plus/Plus
Query 111 TCTCTTCGACACTCATAACACATGGGCCTTTGT-TTTCGGCTTGCTCGGAAACCTCATTT 169
||||||| ||||| | ||||||||||||||||| ||| ||||||||||| ||||| || |
Sbjct 98 TCTCTTCAACACTGAAAACACATGGGCCTTTGTCTTT-GGCTTGCTCGGCAACCTTATCT 156
Query 170 CCTTTGCTGTTTTCCTCTCTCCCGTGCCAACGTTCTACAGGATTTGTAAGAAGAAAACCA 229
||||||| || ||||| ||||| |||||||||||||| |||||||| |||||||| || |
Sbjct 157 CCTTTGCCGTGTTCCTATCTCCTGTGCCAACGTTCTATAGGATTTGGAAGAAGAAGACAA 216
Query 230 CAGAAGGATTTCAATCTATTCCCTACCTGGTGGCGCTATTCAGCGCGATGCTTTGGCTCT 289
||||||| ||||| |||||||| || | |||||||| ||||| |||| ||||||||| |
Sbjct 217 CAGAAGGGTTTCAGTCTATTCCTTATGTTGTGGCGCTCTTCAGTGCGACGCTTTGGCTTT 276
Query 290 ACTACGCTACTCAGAAGAAAGATGTCTTCCTTCTCGTCACCATCAACAG-CTTTGGTTGT 348
|||| || || |||||||||||||||||||| ||||| ||||| ||| | |||||||||
Sbjct 277 ACTATGCGACACAGAAGAAAGATGTCTTCCTCCTCGTAACCATTAAC-GCCTTTGGTTGC 335
Query 349 TTCATTGAAACCATATACATCTCCATCTTCGTTGCCTTCGCAT-CCAAGAAAGCTCGAAT 407
||||| |||||||| |||||||| || ||| |||||| ||| | ||||| |||||| ||
Sbjct 336 TTCATCGAAACCATCTACATCTCTATGTTCCTTGCCTACGC-TCCCAAGCCAGCTCGGAT 394
Query 408 GCTCACGGTGAAGCTG-TTGTTGCTAATGAACTTTGGAGGATTCTGTTTGATTCTCCTCC 466
| | || |||||| || | || || ||||||||||||||||||||| ||||||||| |
Sbjct 395 GTTGACAGTGAAGATGCTACTT-CTTATGAACTTTGGAGGATTCTGTGCGATTCTCCTTC 453
Query 467 TCTGCCAATTCTTGGCCAAAGGAACCACACGTGCCAAGATCATTGGAGGAATCTGTGTCG 526
| ||||||||||||| |||||| |||||||||| ||||| || ||||||||||||||||
Sbjct 454 TTTGCCAATTCTTGGTAAAAGGAGCCACACGTGCTAAGATTATCGGAGGAATCTGTGTCG 513
Query 527 GATTCTCTGTCTGCGTTTTCGCTGCGCCGCTTAGCATTATCAGAACGGTGATAAAGACGA 586
|||||||||| || ||||||||||| || || ||||| ||||| ||||| |||||||| |
Sbjct 514 GATTCTCTGTTTGTGTTTTCGCTGCTCCTCTAAGCATAATCAGGACGGTAATAAAGAC-A 572
Query 587 A-AAGTGTTGAGTACATGCCGTTTAGCTTATCCTTGACTCTTACCATCAGTGCGGTCATA 645
| |||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||
Sbjct 573 AGAAGTGTGGAGTACATGCCCTTTAGCTTATCCTTAACCCTTACCATCAGTGCTGTCATA 632
Query 646 TGGCTCCTTTATGGTCTTGCTCTTAAGGATATCTATGTTGCCTTCCCTAACGTGATTGGG 705
||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||| ||||
Sbjct 633 TGGCTCCTTTATGGTCTTGCTCTCAAGGACATCTATGTTGCTTTCCCGAATGTGCTTGGT 692
Query 706 TTTGTTCTCGGTGCACTTCAAATGATACTTTACGTGGTTTACAAATACTGCAAAACGCCG 765
|||| |||||||||||| ||||||||||| ||||| || ||||||||||| |||||| ||
Sbjct 693 TTTGCTCTCGGTGCACTCCAAATGATACTCTACGTTGTCTACAAATACTGTAAAACGTCG 752
Query 766 TCGGATTT-GGTTGAAAAAGAACTCGAAGCCGCGAAATTGCCGGAAGTGAGCATTGATAT 824
|| || | || || |||||| ||||||| || || || ||||| |||||| | |||||
Sbjct 753 CCGCATCTAGGA-GAGAAAGAAGTCGAAGCTGCTAAGTTACCGGAGGTGAGCCTCGATAT 811
Query 825 GCTGAAGTTAGGTACACTGACATCTCCTGAACCAGCAGCGATCACAGTCGTCCGATCC-G 883
| ||||| |||| ||| | |||| ||||| ||| | | ||| || || || || |
Sbjct 812 GTTGAAGCTAGGCACAGTTTCATCCCCTGAGCCA--ATC--TCA--GTGGTTCG-TCAAG 864
Query 884 TGAACACGTGTAACTGT--AAC-GATCGAAAGGCTGAGATTGAAAATGG 929
||||| ||||| ||| || ||||||| ||||||||||||| ||||
Sbjct 865 CGAACAAGTGTACCTGCGGAAATGATCGAAGGGCTGAGATTGAAGATGG 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61294865445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5