BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484960
Length=3180
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45780.1 | Symbols: PHOT1, NPH1, JK224, RPT1 | phototropin 1... 4857 0.0
> AT3G45780.1 | Symbols: PHOT1, NPH1, JK224, RPT1 | phototropin
1 | chr3:16816866-16824210 FORWARD LENGTH=3304
Length=3304
Score = 4857 bits (2630), Expect = 0.0
Identities = 2973/3137 (95%), Gaps = 29/3137 (1%)
Strand=Plus/Plus
Query 1 GAAAAATCGTAGAATAATCTGTTTCTTCCTA-CACAAGTTAACTTGCAAGAGAGAGCTCA 59
||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2 GAAAAATCGAAGGATAATCTGTTTCTTCC-AGCACAAGTTAACTTGCAAGAGAGAGCTCA 60
Query 60 AAGATGGAACCAACAGAGAAACCATCGACCAAACCGTCTTCTCGGACTCTACCTAGAGAC 119
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AAGATGGAACCAACAGAAAAACCATCGACCAAACCATCTTCTCGGACTCTACCTAGAGAC 120
Query 120 ACTCGTGGCTCTCTCGAAGTATTCAACCCGTCAACTCACCCGGCCCGACCCGATAACCCG 179
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 121 ACTCGTGGCTCTCTCGAAGTATTCAACCCGTCAACTCAGCTGACCCGACCCGATAACCCG 180
Query 180 GTGTACCGTCCTGAACCACCAACGTGGCAAAACTTGAGTGATCCACGTGGCACCAGTCCT 239
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGTTCCGTCCTGAACCACCAGCGTGGCAAAACTTGAGTGATCCACGTGGCACCAGTCCT 240
Query 240 CAACCCCGACCAGAACAAGAACCAGCTCCCTCCAATCCTGTTCGGTCTGATCAAGAAATC 299
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 CAACCCCGACCACAACAAGAACCAGCTCCATCCAACCCTGTTCGGTCTGATCAAGAAATC 300
Query 300 GCTGTCACAACCTCATGGATGGCCCTGAAAGACCCATCACCGGAGAAAATCTCCAAGAAG 359
|||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 301 GCTGTCACGACCTCATGGATGGCTCTGAAAGACCCATCACCGGAGACAATCTCCAAGAAG 360
Query 360 ACGATCACCGCCGAGAAACCACAGAAGTCGGCGGTGGCTGCTGAGCAGAGAGCGGCGGAG 419
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 361 ACGATCACCGCCGAGAAACCACAGAAGTCGGCGGTGGCGGCTGAGCAGAGAGCGGCAGAG 420
Query 420 TGGGGATTGGTTTTGAAGACGGATACAAAGACGGGAAAGCCACAAGGAGTGA-GCGTGAG 478
|||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 421 TGGGGATTGGTTTTGAAGACCGATACAAAGACGGGAAAGCCACAAGGAGT-AGGCGTGAG 479
Query 479 GAACTCTGGTGGGACTGAGCATGATCCTAACGGGAAAAAGACTACATCGCAGAGAAACTC 538
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAACTCTGGTGGAACTGAGAATGATCCTAACGGGAAAAAGACTACATCGCAGAGAAACTC 539
Query 539 GCAGAATTCTTGCCGGAGCTCCGGCGAGATGTCCGACGGAGATG-TCGTCGGAGGGA-GA 596
||| || ||||||||||||||||| |||||||| |||||||||| || ||| |||| ||
Sbjct 540 GCAAAACTCTTGCCGGAGCTCCGGTGAGATGTCGGACGGAGATGTTC-CCGGCGGGAGGA 598
Query 597 GGAGGGATTCCAAGAGTATCGGAAGATCTGAAAGATGCGTTGTCAACGTTTCAACAAACG 656
| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 599 -GTGGGATTCCAAGAGTATCGGAAGATCTAAAAGATGCGTTGTCGACGTTTCAACAAACG 657
Query 657 TTTGTGGTTTCAGATGCTACAAAACCTGATTACCCGATTATGTATGCAAGTGCTGGTTTC 716
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 TTTGTGGTCTCAGATGCTACAAAACCTGATTATCCGATTATGTATGCAAGTGCTGGTTTC 717
Query 717 TTCAATATGACCGGTTACACTTCCAAAGAGGTCGTCGGCAGAAACTGCCGATTTTTACAA 776
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 718 TTCAATATGACTGGTTACACTTCCAAAGAAGTCGTCGGCAGAAACTGCCGATTTTTACAA 777
Query 777 GGATCAGGGACAGATGCTGATGAGTTAGCGAAGATCAGAGAGACATTAGCTGCTGGTAAC 836
|||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 778 GGATCAGGTACAGATGCAGATGAGTTAGCAAAGATAAGAGAGACATTAGCTGCTGGTAAC 837
Query 837 AATTATTGTGGACGTTTATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTC 896
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AATTATTGTGGGCGTATATTGAATTACAAGAAAGATGGGACCTCTTTTTGGAATCTTCTC 897
Query 897 ACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGAATGCAAGTG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ACGATTGCTCCCATTAAAGACGAGAGTGGCAAAGTCCTCAAATTTATCGGAATGCAAGTG 957
Query 957 GAGGTGAGCAAGCACACTGAAGGGGCCAAAGAAAAGAG-TTTGAGGCCCAATGGGCTTCC 1015
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 958 GAGGTGAGCAAGCACACTGAAGGGGCCAAAGAAAAG-GCTTTGAGGCCCAATGGGCTTCC 1016
Query 1016 GGAATCTCTGATTCGATATGATGCCCGCCAAAAAGATATAGCTACGAACTCAGTGACAGA 1075
|||||||||||||||||| |||||||||||||||||||| || || ||||||||||||||
Sbjct 1017 GGAATCTCTGATTCGATACGATGCCCGCCAAAAAGATATGGCGACAAACTCAGTGACAGA 1076
Query 1076 GCTAGTGGAGGCGGTGAAGAGACCTCGAGCACTAAGCGAATCGACGAATCTCCATCCCTT 1135
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1077 GCTAGTAGAGGCGGTGAAGAGACCTCGGGCACTAAGCGAATCGACGAATCTCCATCCCTT 1136
Query 1136 CATGACAAAATCGGAGAGCGATGAACTACCGAAAAAACCTGCTCGGCGAATGTCCGAAAA 1195
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1137 CATGACAAAATCGGAGAGCGATGAACTTCCGAAAAAACCAGCTCGGCGAATGTCCGAAAA 1196
Query 1196 TGTTGTTCCGTCAGGCCGAAGAAACTCTGGCGGCGGAAGAAGAAACTCGATGCAGCGAAT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGTTGTTCCGTCAGGCCGAAGAAACTCTGGCGGCGGAAGAAGAAACTCGATGCAGCGAAT 1256
Query 1256 CAACGAAATTCCCGAGAAGAAATCGAGGAAATCTTCTCTTTCCTTTATGGGGATTAAGAA 1315
|||||||||||||||||| ||||| || |||||||| |||||||| |||||||| |||||
Sbjct 1257 CAACGAAATTCCCGAGAAAAAATCTAGAAAATCTTCCCTTTCCTTCATGGGGATCAAGAA 1316
Query 1316 GAAGAGTGAATCTTTGGATGAATCTATAGACGATGGATTTATAGAGTATGGAGAAGAAGA 1375
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAAGAGCGAATCTTTGGATGAATCTATAGACGATGGATTTATAGAGTATGGAGAAGAAGA 1376
Query 1376 CGATGAAATTAGTGACAGAGACGAGAGACCAGAGAGTGTGGATGATAAAGTGAGACAAAA 1435
|||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1377 CGATGAGATTAGTGATAGGGACGAGAGACCTGAGAGTGTGGATGATAAAGTGAGACAAAA 1436
Query 1436 GGAAATGAGAAAGGGTATTGATCTCGCTACTACACTGGAACGTATCGAGAAGAATTTCGT 1495
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1437 GGAAATGAGAAAGGGTATTGATCTAGCTACTACACTCGAACGTATCGAGAAGAATTTCGT 1496
Query 1496 CATCACTGATCCTCGGCTTCCCGATAATCCCATTATTTTTGCATCTGATAGTTTCTTGGA 1555
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CATCACTGATCCTAGGCTTCCCGATAATCCCATTATTTTTGCATCTGATAGTTTCTTGGA 1556
Query 1556 GCTCACGGAATATAGCCGTGAAGAAATCCTTGGCAGAAATTGCAGGTTTCTGCAAGGTCC 1615
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1557 GCTCACGGAATATAGCCGTGAAGAAATTCTTGGAAGAAATTGCAGGTTTCTACAAGGTCC 1616
Query 1616 AGAGACTGATCTGACCACGGTGAAGAAGATTCGAAATGCTATTGATAACCAAACCGAAGT 1675
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 AGAGACTGATCTAACCACAGTGAAGAAGATTCGAAATGCTATTGATAACCAAACCGAAGT 1676
Query 1676 GACGGTTCAGCTCATCAACTACACTAAAAGCGGAAAGAAGTTTTGGAACATTTTCCACTT 1735
||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 1677 GACAGTTCAGCTCATCAACTACACCAAGAGCGGAAAGAAGTTCTGGAACATTTTCCACTT 1736
Query 1736 GCAACCTATGCGTGATCAAAAGGGAGAAGTACAATACTTTATTGGAGTTCAACTAGACGG 1795
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 GCAACCTATGCGTGATCAGAAGGGAGAAGTACAATACTTTATTGGAGTTCAACTAGACGG 1796
Query 1796 GAGCAAGCACGTAGAGCCAGTTCGCAATGTCATTGAAGAAACCAAAGTGAAAGAGGGGGA 1855
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1797 GAGCAAGCACGTAGAACCAGTTCGCAATGTCATTGAAGAAACCGCAGTGAAAGAGGGAGA 1856
Query 1856 AGAGCTGGTGAAGAAAACAGCTGTAAATATCGATGAAGCAGTTCGAGAACTTCCTGATGC 1915
||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1857 AGACCTGGTGAAAAAAACAGCTGTGAATATCGATGAAGCGGTTCGAGAACTTCCTGATGC 1916
Query 1916 CAACATGAGACCAGAGGATTTATGGGCAAACCACTCAAAGGTTGTTCATTGTAAGCCTCA 1975
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 CAACATGACACCAGAGGATTTATGGGCAAACCACTCAAAGGTTGTTCATTGTAAGCCTCA 1976
Query 1976 TAGGAAAGATTCATCACCATGGATAGCTATCCAAAAGGTATTGGAAAGTGGTGAACCGAT 2035
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1977 CAGGAAAGATTCACCACCATGGATAGCTATCCAAAAGGTGTTGGAAAGTGGTGAACCGAT 2036
Query 2036 TGGTTTGAAGCATTTCAAACCGGTGAAGCCTTTGGGTTCCGGTGATACTGGAAGTGTGCA 2095
||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||
Sbjct 2037 TGGTTTGAAGCATTTCAAACCGGTGAAACCTTTGGGTTCTGGTGACACAGGAAGTGTGCA 2096
Query 2096 TCTAGTGGAACTCGTTGGAACGGATCAGTTGTTTGCAATGAAAGCAATGGACAAGGCTGT 2155
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TCTAGTGGAACTCGTTGGAACAGATCAGTTGTTTGCAATGAAAGCAATGGACAAGGCTGT 2156
Query 2156 CATGCTTAACCGAAACAAAGTGCATAGAGCTAGAGCTGAGAGAGAAATCCTCGATTTGCT 2215
|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 2157 TATGCTTAACCGAAACAAAGTACATAGAGCTAGAGCTGAGAGAGAGATCCTAGATTTGCT 2216
Query 2216 TGACCATCCTTTTCTTCCCGCACTCTACGCTTCATTTCAGACAAAAACACATATATGTCT 2275
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2217 TGACCATCCTTTTCTTCCTGCACTCTACGCTTCTTTTCAGACAAAAACACATATATGTCT 2276
Query 2276 CATTACAGATTACTATCCAGGAGGAGAACTCTTCATGCTCCTAGATCGACAACCTAGGAA 2335
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2277 TATAACAGATTACTATCCAGGAGGAGAACTCTTCATGCTCCTAGATCGACAACCTAGGAA 2336
Query 2336 GGTTCTCAAGGAAGATGCCGTAAGATTCTATGCTGCTCAAGTTGTCGTTTCACTCGAGTA 2395
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 2337 GGTTCTCAAAGAAGATGCTGTAAGATTCTATGCTGCTCAAGTTGTCGTTGCACTCGAGTA 2396
Query 2396 TCTTCACTG----G-A-TAATTTACCGAGACTTGAAACCGGAAAACGTGTTAATCCAAGG 2449
||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2397 TCTTCACTGTCAAGGAATAATTTACCGAGACTTGAAACCGGAAAACGTTTTAATCCAAGG 2456
Query 2450 CAATGGCGATATTTCCTTATCGGATTTCGA-CTTGTCTTGCTTGACATCTTGCAAACCTC 2508
|||||||||||| || || |||||||| || || ||||||||||||||||||||||||||
Sbjct 2457 CAATGGCGATATCTCTTTGTCGGATTTTGATCT-GTCTTGCTTGACATCTTGCAAACCTC 2515
Query 2509 AGCTGTTGATTCCGAGTATAGATGAGAAGAAGAAGAAAAAGCAACAAAAGAGTCAACAAA 2568
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2516 AGCTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAGTCAACAAA 2575
Query 2569 CTCCAATCTTCATGGCTGAACCAATGCGTGCATCAAACTCATTTGTTGGCACTGAAGAGT 2628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 CTCCAATCTTCATGGCTGAACCAATGCGTGCATCAAACTCATTTGTTGGCACTGAAGAGT 2635
Query 2629 ATATTGCTCCGGAAATTATATCCGGGGCAGGACATACGAGTGCAGTGGACTGGTGGGCTC 2688
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2636 ACATTGCTCCGGAAATTATATCCGGAGCAGGACATACGAGTGCAGTAGACTGGTGGGCTC 2695
Query 2689 TTGGTATCCTTATGTATGAAATGTTATACGGATACACTCCGTTTAGAGGAAAAACCCGAC 2748
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2696 TTGGTATACTTATGTATGAAATGTTATACGGATACACTCCTTTTAGAGGAAAAACAAGAC 2755
Query 2749 AGAAGACTTTCACCAATGTTCTTCAGAAAGATCTCAAGTTTCCAGCTAGCATTCCTGCAA 2808
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2756 AGAAGACTTTCACCAATGTTCTTCAAAAAGATCTCAAGTTTCCAGCTAGCATTCCTGCAA 2815
Query 2809 GTCTTCAAGTGAAACAACTGATCTTTAGGCTCTTACAACGAGATCCGAAGAAAAGATTAG 2868
|||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 2816 GTCTTCAAGTGAAACAGCTGATTTTTAGGCTGTTACAACGAGATCCGAAGAAAAGACTAG 2875
Query 2869 GCTGTTTTGAAGGAGCAAACGAAGTCAAGAAACATTCTTTCTTCAAAGGCATAAATTGGG 2928
| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 2876 GTTGTTTTGAAGGAGCAAATGAAGTCAAGCAACATTCTTTCTTCAAAGGCATAAATTGGG 2935
Query 2929 CTCTTATTCGATGCACGAATGCTCCGGAGCTAGAGACTCCGATATTTTCTGGTGAAGCTG 2988
|||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 2936 CTCTGATTCGATGCACGAACCCTCCAGAGCTCGAGACTCCGATATTTTCTGGTGAAGCTG 2995
Query 2989 AAAACGGAGAGAAAGTTGTTGATCCTGACCTGGAAGATCTGCAAACAAATGTTTTTTGAA 3048
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 2996 AAAACGGAGAGAAAGTTGTTGATCCTGAGCTAGAAGATCTGCAAACAAATGTTTTTTGAG 3055
Query 3049 ATTTGAATTATATGTTTCTTGTTTTCTCTTTACCGATTTCAAGAATTGTTTGAAACTCTT 3108
||||| | || | |||| | ||||||| ||| | | | ||||||||||||||||||
Sbjct 3056 ATTTGGACTAAACGTTTATCGTTTTCT-TTT-C--A----A-GAATTGTTTGAAACTCTT 3106
Query 3109 TGCTTTTC-AAAAATCT 3124
|| || || ||||||||
Sbjct 3107 TG-TTCTCCAAAAATCT 3122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158176371279
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5