BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484970
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45900.1 | Symbols: | Ribonuclease P protein subunit P38-re... 2067 0.0
> AT3G45900.1 | Symbols: | Ribonuclease P protein subunit P38-related
| chr3:16874402-16876083 REVERSE LENGTH=1433
Length=1433
Score = 2067 bits (1119), Expect = 0.0
Identities = 1267/1336 (95%), Gaps = 20/1336 (1%)
Strand=Plus/Plus
Query 103 gaagaagaagaagagagattgagaatgagaagcttcgttgaggaagaagaagagcatgat 162
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 112 GAAGAAGAAGAAGAGAGATTGAGAATGAGAAGCTTCGTTGAGGAAGAAAAAGAGCATGAT 171
Query 163 gaattgaagaaACTAGCAAAATCATTTCTAGTTTTAAGCTTCTCAGTAATGTTAGCTCAT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GAATTGAAGAAACTAGCAAAATCATTTCTAGTTTTAAGCTTCTCAGTAATGTTAGCTCAT 231
Query 223 CTCCCAAACGACGCAATCTCTCTCGTCCCGAGATTAACATCTGAAGTCACCGAGCTAAAA 282
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 232 CTCCCAAACGACGCAATCTCTCTTGTCCCGAGATTAACATCTCAAGTCACCGAGCTAAAA 291
Query 283 CGGCGACTCGCGACGGCGGAGGAACAAGTCCGTCAGATGAAATCTCGGCGCGTGGAAGAT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CGGCGACTCGCGACGGCGGAGGAACAAGTCCGTCAGATGAAATCTCGGCGCGTGGAAGAT 351
Query 343 TCAAAAGCTAACGCGCGTGTGGTCGAGATCTTCGCTAGTCATAGAAACGCTTGGCAAGAA 402
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 352 TCGAAAGCTAACGCGCGTGTGGTCGAGATCTTTGCTAGTCATAGAAACGCTTGGCAAGAA 411
Query 403 GAAGAGAAACGATTGTTGAATCGGATTCATGAAATGGAAGAAGAAAGAGAAGATTTCATG 462
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 412 GAAGAGAAACGATTGTTGAATCGGATTCATGAAATTGAAGAAGAAAGAGAAGATTTCATG 471
Query 463 AATAGGATTAGTGAGCTCGAGAGAGAAGTTAGTGAGAGAGATGAAATGATTGGGTTTATG 522
|||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 472 AATAGGATTAGTGAATTGGAGAGGGAAGTGAGTGAGAGAGATGAAATGATTGGGTTTATG 531
Query 523 TCTCgaagagagattgaggaagaagatgaagatgaagaaggagatggagatgagTCTAGT 582
||||||||||||||||||||||||||| ||||| || ||| | ||||||||||| |||
Sbjct 532 TCTCGAAGAGAGATTGAGGAAGAAGAT---GATGATGATGGACAAGGAGATGAGTCCAGT 588
Query 583 GAACGTTATGGTGTGGATCACCTCACTGTATCATCATCACC-TAATGCTTATGGGATTAA 641
|||||||||| ||||||||| |||||| |||| |||||||| | | || || | ||
Sbjct 589 GAACGTTATGCTGTGGATCATCTCACTCTATCTTCATCACCATCA-CCTAAT--GCTT-- 643
Query 642 CCCAAGTTCCAATTTTACTCCTTTCCAGGATTTACAATATGAATCTTTGGAATCTGTGTA 701
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 ----A-TGGCAATTTTAATCCTTTCCAGGATTTACAATATGAATCTTTGGAATCTGTGTA 698
Query 702 TCGTATGAAGCATTTTGTGCCAAGAAGGGAATCACCATGGAAGATTGATAGTGAAGGGAC 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 TCGTATGAAGCATTTTGTGCCAAGAAGGGAATCACCATGGAAGATTGATAGTGAAGGGAC 758
Query 762 GGGTGTATCTGCGAAACTGAGGTTGCTTGAAGAGGAATTACTGAATCTTGAGAAAGTTTG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GGGTGTATCTGCGAAACTGAGGTTGCTTGAAGAGGAATTACTGAATCTTGAGAAAGTTTG 818
Query 822 TCGT---AGTGACATTTCGAAAGTTCCATCTTTGTTGAGGAAACAGGCGAAGAGGTATCA 878
|||| |||||||| ||||||||||| |||||||||| |||||||| |||||||||||
Sbjct 819 TCGTCCTAGTGACATATCGAAAGTTCCGTCTTTGTTGAAAAAACAGGCTAAGAGGTATCA 878
Query 879 AGCTCTTTCAGGGAAGATTGATGATCTATGTAGAAGAATGCAGAGTAGTGATCCGTGTGA 938
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 879 AGCTCTTTCAGGGAAGATCGATGATCTATGTAGAAGAATGCAGAGTAGTGATCCGTGCGA 938
Query 939 TGCTACATTAGGACCTGAGTTCAGGACGCAAAGACAAACCGAGTTTCTGCTCGAGTGTTT 998
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 939 TGCTACATTAGGACCTGAGTTCAGGACGCAAAGACAAAACGAGTTTCTGCTCGAGTGTTT 998
Query 999 CAGGCTTCAGCAGCGGGCATCAGAGACAGGGCAGAAGCTAGTTTCATTGCAGACGGAAAT 1058
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 999 CAGACTTCAGCAACGGGCATCGGAGACAGGGCAGAAGCTAGTTTCATTGCAGACGGAAAT 1058
Query 1059 CACGAGGAGTAATCAAGGAGATCAGTTAAGCCAAGCCAAGATGAACACAGGGAGGTCATT 1118
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 CACCAGGAGTAATCAAGGAGATCAGTTAAGCCAAGCCAAGATGAACACAGGGAGGTCATT 1118
Query 1119 GGATTTGATTAAGAACAACTTGAAAGAAGTTCAGAGAAACTTGGAGATTTGGCTGGCTAG 1178
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GGATTTGATCAAGAACAACTTGAAAGAAGTTCAGAGAAACTTGGAGATTTGGCTGGCTAG 1178
Query 1179 GATCATTGGAGATCTCGAAGGCATACTTGCTAGAGACGGGGCTTCACGTGTAAGAGAATT 1238
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1179 AATTATTGGAGATCTTGAAGGTATACTTGCTAGAGACGGGGCTTCACGTGTAAGAGAATT 1238
Query 1239 CTACGTTGCTCGATACCCTTTTGTTCAGTAGAATCAGAAATCTCTCTATCTCTTAAGGCT 1298
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1239 CTACGTTGCTCGATACCCTTTTGTTCAGTAGAATCAGAAATCTCTCTATCACTTAAGACT 1298
Query 1299 AACTCGCCAtttttttt--GTTTCTTTTGCCTTGTGTATGTGTGTCTGTAACTGTGGTTA 1356
||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||
Sbjct 1299 AACTCGCCATTTTTTTTTTGTTTCTGTTGCCTTATGTATGTGTGTCTGTAACTGTG-TTA 1357
Query 1357 ACCTGCTAAAGATCAGTGTAGAAGTCTAGGTTTGATCTGATAAATAAACAAGTTGTGTTA 1416
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1358 ACCTGCTAAAGATCAGTGTAGAAGTCTAGGTTTGATCTGATAAATAAGCAAGTTGTGTTA 1417
Query 1417 TATTATTAATCATTCC 1432
||||||||||||||||
Sbjct 1418 TATTATTAATCATTCC 1433
Score = 69.4 bits (37), Expect = 9e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 AAAAAATGTCCTACCGTTTTTGCTGATAGATTGaaaa 37
|||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAATGTCCTACCGTTTTTGCTGATAGATTGAAAA 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5