BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484971
Length=458
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45930.1 | Symbols: | Histone superfamily protein | chr3:16... 560 4e-159
AT3G46320.1 | Symbols: | Histone superfamily protein | chr3:17... 507 5e-143
AT2G28740.1 | Symbols: HIS4 | histone H4 | chr2:12329488-123299... 276 1e-73
> AT3G45930.1 | Symbols: | Histone superfamily protein | chr3:16883316-16883876
FORWARD LENGTH=561
Length=561
Score = 560 bits (303), Expect = 4e-159
Identities = 344/363 (95%), Gaps = 5/363 (1%)
Strand=Plus/Plus
Query 2 AGAAAAA-TCAAAGTTTCC-TGAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGATTG 59
||||||| || ||| |||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 50 AGAAAAATTC-AAG-TTCCTTTAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTG 107
Query 60 GGCAAAGGAGGAGCCAAACGTCACAGGAAGGTTCTAAGAGACAACATCCAAGGAATCACT 119
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 108 GGCAAAGGTGGAGCCAAACGTCATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACT 167
Query 120 AAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTGTCAAGCGTATTAGTGGTCTGATC 179
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 168 AAACCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATC 227
Query 180 TACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGGAGAATGTTATTCGTGACGCCGTT 239
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 228 TACGAAGAGACACGTGGCGTTCTCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTT 287
Query 240 ACTTATACTGAGCACGCTCGGAGGAAGACGGTGACTGCTATGGATGTCGTTTATGCTCTT 299
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 288 ACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTT 347
Query 300 AAGAGACAAGGAAGAACTCTCTATGGATTCGGCGGCTAGGGTTTTTGATTGTTGTTTTTA 359
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 348 AAGAGACAAGGAAGAACTCTCTACGGATTCGGCGGCTAGGGTTTTTGATTGTTGTTTTT- 406
Query 360 TGT 362
|||
Sbjct 407 TGT 409
> AT3G46320.1 | Symbols: | Histone superfamily protein | chr3:17019911-17020428
REVERSE LENGTH=518
Length=518
Score = 507 bits (274), Expect = 5e-143
Identities = 323/346 (93%), Gaps = 5/346 (1%)
Strand=Plus/Plus
Query 2 AGAAAAA-TCAAAGTTTCC-TGAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGATTG 59
||||||| || || |||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 50 AGAAAAATTC--AGGTTCCTTTAGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTG 107
Query 60 GGCAAAGGAGGAGCCAAACGTCACAGGAAGGTTCTAAGAGACAACATCCAAGGAATCACT 119
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 108 GGCAAAGGTGGAGCCAAACGTCATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACT 167
Query 120 AAGCCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTGTCAAGCGTATTAGTGGTCTGATC 179
|| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 168 AAACCGGCGATTCGGAGATTGGCTCGTAGAGGTGGTGTTAAACGTATTAGTGGTTTGATC 227
Query 180 TACGAGGAGACACGTGGCGTACTCAAGATCTTTTTGGAGAATGTTATTCGTGACGCCGTT 239
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 228 TACGAGGAGACACGTGGCGTTCTCAAGATCTTTTTGGAAAATGTTATCCGTGACGCCGTT 287
Query 240 ACTTATACTGAGCACGCTCGGAGGAAGACGGTGACTGCTATGGATGTCGTTTATGCTCTT 299
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 288 ACTTACACTGAGCACGCTCGGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTT 347
Query 300 AAGAGACAAGGAAGAACTCTCTATGGATTCGGCGGCT-AGGGTTTT 344
|||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 348 AAGAGACAAGGAAGAACTCTCTATGGATTCGGTGGTTGAGGATTTT 393
> AT2G28740.1 | Symbols: HIS4 | histone H4 | chr2:12329488-12329995
REVERSE LENGTH=508
Length=508
Score = 276 bits (149), Expect = 1e-73
Identities = 259/311 (83%), Gaps = 12/311 (4%)
Strand=Plus/Plus
Query 24 AAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGATTGGGCAAAGGAGGAGCCAAA-CGTCA 82
||||||||||| | ||||| ||||| ||||| || ||||||||||||| |||| | ||
Sbjct 39 AAAATGTCAGGAAGAGGAAAAGGAGGAAAAGGGTTAGGCAAAGGAGGAG-CAAAGAGACA 97
Query 83 CAGGAAGGTTCTAAGAGACAACATCCAAGGAATCACTAAGCCGGCGATTCGGAGAT-TGG 141
||| |||||||||||||||||||| ||||||||||| ||||| |||||||| | | | |
Sbjct 98 CAGAAAGGTTCTAAGAGACAACATTCAAGGAATCACAAAGCCAGCGATTCGTCG-TCTTG 156
Query 142 CTCGTAGAGGTGGTGTCAAGCGTATTAGTGG-TCTGATCTACGAGGAGAC-ACGTGGCGT 199
|||||||||| ||||| ||| | || ||||| | ||||||| || || || | | || ||
Sbjct 157 CTCGTAGAGGAGGTGTGAAGAGAATCAGTGGAT-TGATCTATGAAGAAACGA-GAGGTGT 214
Query 200 ACTCAAGATCTTTT-TGGAGAATGTTATTCGTGACGCCGTTACTTATACTGAGCACGCTC 258
| ||||| |||| |||||||||| ||| | || || |||||||| |||||||| ||
Sbjct 215 GTTGAAGAT-TTTTCTGGAGAATGTGATTAGAGATGCTGTTACTTACACTGAGCATGCGA 273
Query 259 GGAGGAAGACGGTGACTGCTATGGATGTCGTTTATGCTCTT-AAGAGACAAGGAAGAACT 317
|||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 274 GGAGGAAGACGGTGACTGCTATGGATGTTGTTTATGC-CTTGAAGAGACAAGGAAGAACT 332
Query 318 CTCTATGGATT 328
|| ||||||||
Sbjct 333 CTATATGGATT 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21816203066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5