BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484976
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45970.1 | Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1... 1286 0.0
AT3G45960.2 | Symbols: ATEXLA3, EXPL3, ATEXPL3, ATHEXP BETA 2.3... 968 0.0
AT4G38400.1 | Symbols: ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2... 833 0.0
> AT3G45970.1 | Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1,
EXLA1 | expansin-like A1 | chr3:16896166-16897308 FORWARD
LENGTH=989
Length=989
Score = 1286 bits (696), Expect = 0.0
Identities = 845/916 (92%), Gaps = 14/916 (2%)
Strand=Plus/Plus
Query 1 CATCTAAATTCACATATCTCTCT-AC---TTTGCTCATATAGATATTATTTTTTCCTCTA 56
||| ||||||||||||||||||| | |||| ||||| |||||||||| ||| || |
Sbjct 2 CATGTAAATTCACATATCTCTCTCTCTTATTTGATCATAAAGATATTATTGCTTCTTCAA 61
Query 57 GAAAAAC-AAAAATGGGAAGCTTTCTCTACCTCATCGTAGTCATCTTCCTCTTCTCATCA 115
| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 62 G-TAAACAAAAAATGGGAAGCTTTCTCTTCCTCATCGTAGTCATCTTCCTCTTCTCTTCA 120
Query 116 TCTGTTAACGCTTGTGATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCT 175
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCGTTAACGCTTGTGATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCC 180
Query 176 TCTGCTCTCTCTTCTGGAGCTTGTGCTTATGGCTCTATGGCTACGAGTTTCTTCGCCGGA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTGCTCTCTCTTCTGGAGCTTGTGCTTATGGCTCTATGGCTACGAGTTTCTTCGCCGGA 240
Query 236 CACATAGCCGCAGCTATACCTTCGATCTACAAAGACGGCGCTGGTTGTGGAGCTTGCTTT 295
|| || || |||||||| ||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 241 CATATCGCTGCAGCTATCCCTTCTATCTACAAAGACGGTGCTGGCTGTGGAGCTTGCTTT 300
Query 296 CAAGTCAGATGCAAGAACCCTAAGCTGTGTAGCAGC-AAAGGAACCATTGTGATGATCAC 354
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 301 CAAGTCAGATGCAAGAACCCTAAGCTGTGTAGCA-CTAAAGGAACCATTGTGATGATCAC 359
Query 355 AGACTTGAACAAGAGCAACCAAACCGATCTTGTCCTTAGTAGCAGAGCATTTAGAGCTAT 414
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 AGACTTAAACAAGAGTAACCAAACCGATCTTGTCCTTAGTAGCAGAGCTTTTAGAGCTAT 419
Query 415 GGCTAAACCTGTTGTTGGTGCTGACAAAGATCTTCTCAAACAAGGCATTGTCGATATCGA 474
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 420 GGCTAAACCTATTGTTGGTGCTGACAAAGACCTTCTCAAACAAGGCATTGTCGACATCGA 479
Query 475 ATACCAAAGAGTTCCTTGCGATTACGGGAACAAGAACCTAAACGTGAGAGTCGAAGAAGC 534
||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||
Sbjct 480 ATACCAAAGAGTTCCTTGCGATTACGGCAACAAGAACATGAACGTGAGAGTAGAAGAAGC 539
Query 535 AAGCAA-AAAGCCATACTACTTAGAGATAAAGCTTTTATACCAAGGAGGACAAACCGAAG 593
|||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 540 AAGCAAGAAA-CCAAACTACTTAGAGATAAAGCTTTTATACCAAGGAGGTCAAACAGAAG 598
Query 594 TAGTATCAATCGACATTGCTCAGGTCGGTTCATCGCCAAATTGGGGTTACATGACCAGAA 653
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 599 TAGTATCCATCGACATTGCTCAAGTCGGTTCATCGCCAAATTGGGGTTACATGACAAGAA 658
Query 654 GCCACGGAGCTGTATGGGCGACTGACAAAGTACCAACCGGCGCTCTTCAGTTCAGATTCA 713
||||||||||||| |||| |||||||||||||| ||||| ||| | |||||||| |||
Sbjct 659 GCCACGGAGCTGTTTGGGTAACTGACAAAGTACCCACCGGAGCTATCCAGTTCAGGTTCG 718
Query 714 TAGTAACCGGCGGCTACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATT 773
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TAGTAACCGGTGGATACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATT 778
Query 774 GGGAAGCTGGGAAGACTTACGACGCCGGCGTTCAAATCACAGACATTGCTCAAGAAGGTT 833
||||||||||||| | |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 779 GGGAAGCTGGGAAAATTTACGACGCCGGTGTTCAAATCACTGACATTGCTCAAGAAGGTT 838
Query 834 GTGATCCATGCGATGCTCACATCTGGAACTAACTTATTTATTTAAGCACACAA-CAAACA 892
||||||| |||||||||||||||||||||||| ||||||| | |||||||| ||||||
Sbjct 839 GTGATCCTTGCGATGCTCACATCTGGAACTAAGTTATTTAGTG--GCACACAAACAAACA 896
Query 893 CCCTT-ATAGGTTTAT 907
| || ||||||||||
Sbjct 897 TCTTTCATAGGTTTAT 912
> AT3G45960.2 | Symbols: ATEXLA3, EXPL3, ATEXPL3, ATHEXP BETA 2.3,
EXLA3 | expansin-like A3 | chr3:16892756-16893900 FORWARD
LENGTH=973
Length=973
Score = 968 bits (524), Expect = 0.0
Identities = 763/878 (87%), Gaps = 18/878 (2%)
Strand=Plus/Plus
Query 1 CATCTAAATTCACATATCTCTCTACTTTGCTCATATAGATATTATTT-TTTCCTCTAGAA 59
||| |||||||||||||||||||| |||||||| |||||||||||| |||||||| |||
Sbjct 2 CATGTAAATTCACATATCTCTCTAATTTGCTCA-CTAGATATTATTTCTTTCCTCTTGAA 60
Query 60 AA--ACAAAAATGGGAAGCTTTCTCTACCTCATCGTAGTCATCTTCCTCTTCTCATCATC 117
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 AAGTCCAAAAATGAGAAGCTTTCTCTACCTCATCGTAGTCATCTTCCTCTTCTCTTCATC 120
Query 118 TGTTAACGCTTGTGATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCTTC 177
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 121 CGTTAACGCTTGTGATCGATGTCTACACCGTTCTAAAGCATCTTATTTCTCCTCTGCTTC 180
Query 178 TGCTCTCTCTTCTGGAGCTTGTGCTTATGGCTCTATGGCTACGAGTTTCTTCGCCGGACA 237
|||||||||||| || |||||||| |||||| ||||||||||||| ||||| ||||| ||
Sbjct 181 TGCTCTCTCTTCCGGGGCTTGTGCCTATGGCCCTATGGCTACGAGCTTCTTTGCCGGCCA 240
Query 238 CATAGCCGCAGCTATACCTTCGATCTACAAAGACGGCGCTGGTTGTGGAGCTTGCTTTCA 297
||| || || ||||||||||| || |||||||| || ||||| |||||||||||||||||
Sbjct 241 CATTGCGGCCGCTATACCTTCCATTTACAAAGATGGTGCTGGCTGTGGAGCTTGCTTTCA 300
Query 298 AGTCAGATGCAAGAACCCTAAGCTGTGTAGCAGCAAAGGAACCATTGTGATGATCACAGA 357
|||||||||||||||||| ||| |||||| ||| |||||||||||||||||| |||||||
Sbjct 301 AGTCAGATGCAAGAACCCCAAGTTGTGTAACAGTAAAGGAACCATTGTGATGGTCACAGA 360
Query 358 CTTGAACAAGAGCAACCAAACCGATCTTGTCCTTAGTAGCAGAGCATTTAGAGCTATGGC 417
|||||||| |||||||||||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 361 CTTGAACACGAGCAACCAAACTGATCTTGTCCTTAGTAGTAGAGCTTTTAGGGCTATGGC 420
Query 418 TAAACCTGTTGTTGGTGCTGACAAAGATCTTCTCAAACAAGGCATTGTCGATATCGAATA 477
||| ||||||||||||| ||||||| | ||||||||||||||||| ||||| | |||||
Sbjct 421 TAAGCCTGTTGTTGGTGTTGACAAATACCTTCTCAAACAAGGCATCGTCGACGTTGAATA 480
Query 478 CCAAAGAGTTCCTTGCGATTACGGGAACAAG-AACCTAAACGTGAGAGTCGAAGAAGCAA 536
|||||||||||||||| ||||||| || ||| || | ||||||||||| ||||||||||
Sbjct 481 CCAAAGAGTTCCTTGCAATTACGGTAA-AAGGAATTTGAACGTGAGAGTGGAAGAAGCAA 539
Query 537 GCAAAAAGCCATACTACTTAGAGATAAAGCTTTTATACCAAGGAGGACAAACCGAAGTAG 596
||||||||||| | ||||| | ||||||||| || ||||||||||| ||||||||||| |
Sbjct 540 GCAAAAAGCCAAATTACTTGGCGATAAAGCTATTGTACCAAGGAGGTCAAACCGAAGTGG 599
Query 597 TATCAATCGACATTGCTC-AGGTCGGTTCATCGCCAAATTGGGGTTACATGACCAGAAGC 655
|| ||||||||||||| || | ||||| || | || | || ||||||||| ||||||
Sbjct 600 TAGGTATCGACATTGCTCCAG-TAGGTTCGTCAC-AA-T-GGAGTTACATGAGTAGAAGC 655
Query 656 CACGGAGCTGTATGGGCGACTGACAAAGTACCAACCGGCGCTCTTCAGTTCA-GATTCAT 714
|||||||| || |||||||| || ||||||||||| || ||||| ||||||| | ||||
Sbjct 656 CACGGAGCCGTTTGGGCGACCGATAAAGTACCAACGGGAGCTCTACAGTTCAAG-TTCAC 714
Query 715 AGTAACCGGCGGCTACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATTG 774
|| || ||||||||||| || |||| | |||||||| |||| |||||||| | |||||
Sbjct 715 GGTGACAGGCGGCTACGATGGCAAAACGGTTTGGTCAAAGAGGGTTCTTCCGGCGAATTG 774
Query 775 GGAAG-CTGGGAAGACTTACGACGCCGGCGTTCAAATCACAGACATTGCTCAAGAAGGTT 833
| || |||||| || ||| || ||||||||||| ||||| |||||||||||||||||||
Sbjct 775 G-AACTCTGGGAGGATTTATGATGCCGGCGTTCAGATCACCGACATTGCTCAAGAAGGTT 833
Query 834 GTGATCCATGCGATGCTCACATCTGGAACTAACTTATT 871
||||| |||||| | |||||| ||||||| ||| |||
Sbjct 834 GTGATACATGCG--G-TCACATATGGAACTGACTCATT 868
> AT4G38400.1 | Symbols: ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2,
EXLA2 | expansin-like A2 | chr4:17978443-17979740 REVERSE
LENGTH=1105
Length=1105
Score = 833 bits (451), Expect = 0.0
Identities = 685/797 (86%), Gaps = 19/797 (2%)
Strand=Plus/Plus
Query 75 GCTTTCTCTACCTCATCGT-AGTCAT-CTTCCTCTTCTCATCATCTGTTA-ACGCTTGTG 131
||||||||| |||| || | |||| | | |||||||||| ||||||| | ||| || |
Sbjct 86 GCTTTCTCTTCCTCCTC-TCAGTCGTAC-TCCTCTTCTCCTCATCTG-CAGCCGCCTGCG 142
Query 132 ATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCTTCTGCTCTCTCTTCTG 191
| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 143 ACCGATGTCTTCACAGTTCTAAGGCAGCTTATTTCTCCTCTGCATCTGCTCTCTCCTCTG 202
Query 192 GAGCTTGTGCTTATGGCTCTATGGCTA-CGAGTTTCTTCGCCGGACACATAGCCGCAGCT 250
|||||||||| |||||||||||||||| || ||||||||||||||||||| || || |||
Sbjct 203 GAGCTTGTGCATATGGCTCTATGGCTACCG-GTTTCTTCGCCGGACACATTGCTGCGGCT 261
Query 251 ATACCTTCGATCTACAAAGACGGCGCTGGTTGTGGAGCTTGCTTTCAAGTCAGATGCAAG 310
| ||||| ||||||||||||||| | || || ||||||||||| || ||||||||||||
Sbjct 262 CTGCCTTCCATCTACAAAGACGGCTCCGGCTGCGGAGCTTGCTTCCAGGTCAGATGCAAG 321
Query 311 AACCCTAAGCTGTGTAGCAGCAAAGGAACCATTGTGA-TGATCACAGACTTGAACAAGAG 369
||||| | ||| || |||||||||||||||| |||| || ||||||||||||||||||
Sbjct 322 AACCCGACGCTTTGCAGCAGCAAAGGAACCACGGTGATTG-TCACAGACTTGAACAAGAC 380
Query 370 CAACCAAACCGATCTTGTCCTTAGTAGCAGAGCATTTAGAGCTATGGCTAAACCTGTTGT 429
|||||||||||||||||||||||| |||||||| ||||| || |||||||| ||||||||
Sbjct 381 CAACCAAACCGATCTTGTCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAGCCTGTTGT 440
Query 430 TGGTGCTGACAAAGATCTTCTCAAACAAGGCATTGTCGATATCGAATACCAA-AGAGTTC 488
||| || |||| |||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 441 TGGCGCCGACAGAGATCTTCTCAAACAAGGCATTGTCGATATTGAATAC-AGGAGAGTTC 499
Query 489 CTTGCGATTACGGGAACAAGAACCTAAACGTGAGAGTCGAAGAAGCAAGCAAAAAGCCAT 548
||||||||||||| |||||||| | ||||||||||| |||||| |||||||||| |||
Sbjct 500 CTTGCGATTACGGTAACAAGAAGATGAACGTGAGAGTTGAAGAATCAAGCAAAAATCCAA 559
Query 549 ACTACTTAGAGATAAAGCTTTTATACCAAGGAGGACAAACCGAAGTAGTATCAATCGACA 608
||||||| | ||||||||| || ||||||||||| ||||| ||||| ||| | || |||
Sbjct 560 ACTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACTGAAGTGGTAGCCATTTACA 619
Query 609 TTGCTCAGGTCGGTTCATCGCCAAATTGGGGTTACATGACCAGAAGCCACGGAGCTGTAT 668
|||||||||| ||||| || | | |||| ||||||||||||||||||||||||| || |
Sbjct 620 TTGCTCAGGTTGGTTCGTCAC-A--TTGGAGTTACATGACCAGAAGCCACGGAGCCGTGT 676
Query 669 GGGCGACTGACAAAGTACC-AACCGGCGCTCTTCAGTTCAGATTCATAGTAACCGGC-GG 726
||| |||||||||||||| ||| || ||||| |||||||| ||| | || |||| | ||
Sbjct 677 GGGTTACTGACAAAGTACCCAAC-GGAGCTCTGCAGTTCAGGTTCGTGGTGACCG-CAGG 734
Query 727 CTACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATTGGGAAGCTGGGAA 786
||||||||| |||||| | ||||| ||||| || |||||| | || ||||||||||| ||
Sbjct 735 CTACGACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCAGCTAACTGGGAAGCTGGAAA 794
Query 787 GACTTACGACGCCGGCGTTCAAATCACAGACATTGCTCAAGAAGGTTGTGATCCATGCGA 846
| | || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 795 GTCCTATGACGCCGGCGTTCAGATCACAGACATTGCTCAGGAAGGTTGTGATCCATGCGA 854
Query 847 TGCTCACATCTGGAACT 863
| ||||||||||||||
Sbjct 855 CGATCACATCTGGAACT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45411668888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5