BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484977
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein ... 769 0.0
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 627 5e-179
AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr... 529 2e-149
AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-76... 387 1e-106
AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15... 340 8e-93
AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19... 281 5e-75
AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:57... 226 2e-58
AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:29... 222 3e-57
> AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein
| chr3:16897287-16898013 REVERSE LENGTH=727
Length=727
Score = 769 bits (416), Expect = 0.0
Identities = 503/545 (92%), Gaps = 6/545 (1%)
Strand=Plus/Plus
Query 1 AGATATCAAAATCACTCAGATCTGTGCTTCTTCTTCTTCTTCATCATCACCCAG-AAAAA 59
||||||||||||||||||||||||||||||||||||||| | || | || ||||
Sbjct 1 AGATATCAAAATCACTCAGATCTGTGCTTCTTCTTCTTC-AC-CCA-GA-AAAGTAAAAC 56
Query 60 ATAAAGTCAAAACAATGGCGCCGAGAGCAGAGAAGAAGCCAGCGGAGAAGAAACCAGCCG 119
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 57 A-AAAGTCAAAACAATGGCGCCGAGAGCAGAGAAGAAGCCCGCGGAGAAGAAACCAGCCG 115
Query 120 CCGAGAAACCAGTAGAGGAGAAATCCAAAGCCGAGAAAGCTCCGGCAGAGAAGAAACCAA 179
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 116 CCGAGAAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAA 175
Query 180 AAGCCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGCGACAAAaagaagaagatga 239
|||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct 176 AAGCCGGCAAGAAACTCCCGAAGGAAGCCGGGGCCGGCGGCGATAAGAAGAAGAAGATGA 235
Query 240 agaagaagaGTGTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCATC 299
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 236 AGAAGAAGAGTGTGGAAACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATC 295
Query 300 CAGATATTGGTATTTCGAGCAAAGCTATGGGAATCATGAACAGTTTCATCAACGATATCT 359
|||||||||||||||| ||||| |||||||| || |||||||||||||||||||| ||||
Sbjct 296 CAGATATTGGTATTTCAAGCAAGGCTATGGGTATTATGAACAGTTTCATCAACGACATCT 355
Query 360 TCGAGAAATTGGCATCGGAATCGTCGAAGCTTGCGAGGTATAATAAGAAGCCGACGATTA 419
|||||||||||||||||||||| || ||||| || |||||||| ||||||||||||||||
Sbjct 356 TCGAGAAATTGGCATCGGAATCTTCAAAGCTCGCTAGGTATAACAAGAAGCCGACGATTA 415
Query 420 CTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGGTGAGCTTGCGAAACACG 479
||||| ||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 416 CTTCTCGGGAGATTCAGACTGCTGTTAGACTCGTTCTTCCTGGTGAGCTCGCTAAACACG 475
Query 480 CTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCACCAGCTCTTGATTTAGTAAATTAG 539
|||||||||| ||||| ||||| || ||||||||||| ||||||||| ||||||||||||
Sbjct 476 CTGTTTCTGAAGGAACCAAGGCTGTTACCAAATTCACAAGCTCTTGAATTAGTAAATTAG 535
Query 540 GGTTT 544
|||||
Sbjct 536 GGTTT 540
> AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
chr3:16913448-16914131 REVERSE LENGTH=684
Length=684
Score = 627 bits (339), Expect = 5e-179
Identities = 396/424 (93%), Gaps = 2/424 (0%)
Strand=Plus/Plus
Query 104 GAGAAGAAACCAGCCGCCG-AGAAACCAGTAGAGGAGAAATCCAAAGCCGAGAAAGCTCC 162
|||||||| || || | | |||||||||||||||||||||| |||||||||||||||||
Sbjct 96 GAGAAGAAGCCGGCAG-AGAAGAAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCC 154
Query 163 GGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGCGA 222
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 155 TGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAGGAAGCCGGTGCCGGCGGCGA 214
Query 223 CAAAaagaagaagatgaagaagaagaGTGTCGAGACTTACAAGATCTACATCTTCAAGGT 282
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 215 TAAGAAGAAGAAGATGAAGAAGAAGAGTGTTGAGACGTACAAGATCTACATCTTCAAGGT 274
Query 283 TCTGAAGCAAGTTCATCCAGATATTGGTATTTCGAGCAAAGCTATGGGAATCATGAACAG 342
|||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 275 TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACAG 334
Query 343 TTTCATCAACGATATCTTCGAGAAATTGGCATCGGAATCGTCGAAGCTTGCGAGGTATAA 402
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 335 TTTCATCAACGACATCTTTGAGAAATTGGCATCGGAATCGTCGAAGCTCGCGAGGTATAA 394
Query 403 TAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGG 462
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 395 TAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGG 454
Query 463 TGAGCTTGCGAAACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCACCAGCTC 522
||||||||||||||| ||||||||||| ||||||||||||||||| || || || |||||
Sbjct 455 TGAGCTTGCGAAACATGCTGTTTCTGAAGGAACTAAGGCGGTGACTAAGTTTACTAGCTC 514
Query 523 TTGA 526
||||
Sbjct 515 TTGA 518
> AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr5:24127128-24127935
FORWARD LENGTH=808
Length=808
Score = 529 bits (286), Expect = 2e-149
Identities = 414/476 (87%), Gaps = 8/476 (2%)
Strand=Plus/Plus
Query 72 CAATGGCGCCGAGAGCAGAGAAGAAGCCAGCGGAGAAGAAACCAGCCGCCGAGAAACCAG 131
|||||||||||| ||||||||||||||| || |||||||||||||| ||||||| || |
Sbjct 77 CAATGGCGCCGAAAGCAGAGAAGAAGCCCGCTGAGAAGAAACCAGCTTCCGAGAAGCCGG 136
Query 132 TAGAGGAGAAATCCAAAGCCGAGAAAGCTCCGGCAGAGAAGAAACCAAAAGCCGGCAAGA 191
| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 137 TGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGA 196
Query 192 AACTCCCGAAAGAAGCCGGCGCCGGCGGCGACAAAaagaagaagatgaagaagaagaGTG 251
| |||||||| ||||| || ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 197 AGCTCCCGAAGGAAGCTGGTGCCGGAGGCGACAAGAAGAAAAAGATGAAGAAGAAGAGTG 256
Query 252 TCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCATCCAGATATTGGTA 311
||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || |
Sbjct 257 TCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAA 316
Query 312 TTTCGAGCAAAGCTATGGGAATCATGAACAGTTTCATCAACGATATCTTCGAGAAA-TTG 370
| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 317 TCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCGAGAAGCTTG 376
Query 371 GCATCG-GAATCGTCGAAGCTTGCGAGGTATAATAAGAAGCCGACGATTACTTCTAGGGA 429
| || || ||||||||||||||||||| |||||||| || ||||| |||||| ||||
Sbjct 377 -C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCACTTCTCGGGA 434
Query 430 GATTCAGACTGCTGTTAGACTTGTT-CTTCCTGGTGAGCTTG-CGAAACACGCTGTTTCT 487
||||||||||||||| ||| ||| | |||||||| ||| ||| |||| || || ||||||
Sbjct 435 GATTCAGACTGCTGTGAGA-TTGGTGCTTCCTGGAGAG-TTGGCGAAGCATGCCGTTTCT 492
Query 488 GAGGGAACTAAGGCGGTGACCAAATTCACCAGCTCTTGATTTAGTAAATTAGGGTT 543
||||| ||||| || || || |||||||||||||||||| | | | | ||||||||
Sbjct 493 GAGGGGACTAAAGCCGTCACGAAATTCACCAGCTCTTGAATAATTGAGTTAGGGTT 548
> AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-7652622
REVERSE LENGTH=666
Length=666
Score = 387 bits (209), Expect = 1e-106
Identities = 325/378 (86%), Gaps = 19/378 (5%)
Strand=Plus/Plus
Query 162 CGGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCC-GGCGCCGGCGGC 220
||||||||||||||||||||||||| |||||||||||||| ||| || | || || |||
Sbjct 129 CGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAAGGAA-CCAGCCGGCGCCGGA 187
Query 221 GACAAAaagaagaagatga--agaagaagaGTGTCGAGACTTACAAGATCTACATCTTCA 278
||||| |||||||||| || | ||||||| || ||||| |||||||||||||||||||
Sbjct 188 GACAAGAAGAAGAAGA-GATCA-AAGAAGAACGTTGAGACATACAAGATCTACATCTTCA 245
Query 279 AGGT-TCTGAAGCAAGTTCATCCAGATATTGGTATTTCGAGCAAAGCTATGGGAATCATG 337
|||| | |||||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct 246 AGGTGT-TGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAAAGCCATGGGAATCATG 304
Query 338 AACAGTTTCATCAACGATATCTTCGAGAAA-TTGGCATCG-GAATCGTCGAAGCTTGCGA 395
|||||||||||||| |||||||| |||||| || || | | || || |||||||||||||
Sbjct 305 AACAGTTTCATCAATGATATCTTTGAGAAACTT-GC-TGGTGAGTCTTCGAAGCTTGCGA 362
Query 396 GGTATAATAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTC 455
|||| || |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 363 GGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCGGTGAGACTTGTG- 421
Query 456 TT-CCTGGTGAGCTTG-CGAAACACGCTGTTTCTGA-GGGAACTAAGGCGGTGACCAAAT 512
|| ||||| ||| ||| ||||||| ||||||||||| |||| |||||||||| || || |
Sbjct 422 TTGCCTGGAGAG-TTGGCGAAACATGCTGTTTCTGAAGGGA-CTAAGGCGGTTACGAAGT 479
Query 513 TCACCAGCTCTT-GATTT 529
| || || |||| |||||
Sbjct 480 TTACGAGTTCTTAGATTT 497
> AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15736764-15737368
FORWARD LENGTH=605
Length=605
Score = 340 bits (184), Expect = 8e-93
Identities = 335/405 (83%), Gaps = 22/405 (5%)
Strand=Plus/Plus
Query 123 AGAAACCAGTAGAGGAGAAATCCAAAGCCGAGAAAGCTCCGGCAGAGAAGAAACCAAAAG 182
||||||| | |||| ||||| || ||||| |||||||||||| ||||| | || ||||
Sbjct 91 AGAAACCGGCAGAGAAGAAA-CC--AGCCGGGAAAGCTCCGGCGGAGAA-ACTCCCAAAG 146
Query 183 CCGG-CAAGAAACTCCCG-AAAGAAGCCGGCGCCGGCGGCGACAAAaagaagaagatgaa 240
||| |||||| | | | ||||| ||| | | || |||| || |||||||||| ||
Sbjct 147 GCGGAGAAGAAAAT-CAGCAAAGACGCC-G-G-AGGAAGCGAGAAGAAGAAGAAGA--AA 200
Query 241 --gaagaagaGTGTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCAT 298
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 201 TCGAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCAT 260
Query 299 CCAGATATTGGTATTTC-GAGCAAAGCTATGGGAATCATGAACAGTTTCATCAACGATAT 357
|||||| |||| || || | | ||||||||||| || ||||||||||||||||| || ||
Sbjct 261 CCAGATGTTGGAATCTCTGGG-AAAGCTATGGGGATTATGAACAGTTTCATCAATGACAT 319
Query 358 CTTCGAGAAA-TTGGCATC-GGAATCGTCGAAGCTTGCGAGGTATAATAAGAAGCCGACG 415
|||||||||| ||| | || ||||||||| ||||| || ||||| |||||||||||||||
Sbjct 320 CTTCGAGAAACTTG-C-TCAGGAATCGTCAAAGCTCGCTAGGTACAATAAGAAGCCGACG 377
Query 416 ATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCTGGTGAGCTTGCGAA 474
||||| || ||||||||||| || ||||| |||||||| || ||||| || || || ||
Sbjct 378 ATTACATCGAGGGAGATTCAAACCGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGCTAA 436
Query 475 ACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCACCAG 519
||| || |||||||| || || |||||||| ||||||||||||||
Sbjct 437 ACATGCGGTTTCTGAAGGCACGAAGGCGGTTACCAAATTCACCAG 481
> AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19889358-19889774
FORWARD LENGTH=417
Length=417
Score = 281 bits (152), Expect = 5e-75
Identities = 257/306 (84%), Gaps = 13/306 (4%)
Strand=Plus/Plus
Query 225 AAaagaagaagatg-aa--gaagaagaGTGTCGAGACTTACAAGATCTACATCTTCAAGG 281
|||||||||||| | || |||||||| ||||||| ||||||||||||||||||||||
Sbjct 113 AAAAGAAGAAGAAGAAATCGAAGAAGAACATCGAGACGTACAAGATCTACATCTTCAAGG 172
Query 282 TTCTGAAGCAAGTTCATCCAGATATTGGTATTTC-GAGCAAAGCTATGGGAATCATGAAC 340
||||||| ||||||||||| ||||| || || || | | ||||| ||||| |||||||||
Sbjct 173 TTCTGAAACAAGTTCATCCTGATATCGGAATCTCCGGG-AAAGCGATGGGGATCATGAAC 231
Query 341 AGTTTCATCAACGATATCTTCGAGAAATTGGCATC-GGAATCGTCGAAGCTTG-CGAGGT 398
|||||||||||||| |||||||||||| | || || |||||| ||| | ||| | ||||
Sbjct 232 AGTTTCATCAACGACATCTTCGAGAAACTAGC-TCAGGAATCATCGC-GATTGGCTAGGT 289
Query 399 ATAATAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT- 457
| || ||||| |||||||| |||||| |||| |||||||| || || |||||||| ||
Sbjct 290 ACAACAAGAAACCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTG-TTG 348
Query 458 CCTGGTGAGCT-TGCGAAACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCAC 516
||||| ||||| | ||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct 349 CCTGGAGAGCTCT-CGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACTAAATTCAC 407
Query 517 CAGCTC 522
|||||
Sbjct 408 TAGCTC 413
> AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:576742-577140
REVERSE LENGTH=399
Length=399
Score = 226 bits (122), Expect = 2e-58
Identities = 248/308 (81%), Gaps = 12/308 (4%)
Strand=Plus/Plus
Query 223 CAAAaagaagaagatgaagaagaagaGTGTC-GAGACTTACAAGATCTACATCTTCAAGG 281
||| |||||||||| || ||||||||| | ||||| |||||||||||||| |||||||
Sbjct 96 CAAGAAGAAGAAGAAGACGAAGAAGAG-CACAGAGACGTACAAGATCTACATTTTCAAGG 154
Query 282 T-TCTGAAGCAAGTTCATCCAGATATTGGTATTTC-GAGCAAAGCTATGGGAATCATGAA 339
| | |||| || ||||||||||||||||| || || | | ||||| ||||||||||||||
Sbjct 155 TAT-TGAAACAGGTTCATCCAGATATTGGAATCTCTG-GTAAAGCGATGGGAATCATGAA 212
Query 340 CAGTTTCATCAACGATATCTTCGAGAAATTGGCATC-GGAATCGTCGAAG-CTTGCGAGG 397
||||||||||||||| || ||||||||| | || || ||||||||| | || || |
Sbjct 213 CAGTTTCATCAACGACATTTTCGAGAAACTCGC-TCAGGAATCGTCTC-GTCTCGCTCGT 270
Query 398 TATAATAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT 457
|| |||||||| |||||||| || ||| | || || || || || || |||||||||||
Sbjct 271 TACAATAAGAAACCGACGATCACGTCTCGTGAAATCCAAACCGCCGTGAGACTTGTTCTG 330
Query 458 CCTGGTGAGCTTG-CGAAACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCAC 516
|||||||| ||| | || || || || ||||| ||||| || || || |||||||||||
Sbjct 331 CCTGGTGAA-TTGGCTAAGCATGCCGTCTCTGAAGGAACCAAAGCTGTCACCAAATTCAC 389
Query 517 CAGCTCTT 524
|||||||
Sbjct 390 AAGCTCTT 397
> AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:2914714-2915321
REVERSE LENGTH=608
Length=608
Score = 222 bits (120), Expect = 3e-57
Identities = 249/309 (81%), Gaps = 17/309 (6%)
Strand=Plus/Plus
Query 229 gaagaagatgaagaagaagaGTGTC-GAGACTTACAAGATCTACATCTTCAAGGT-TCTG 286
|||||||| || |||||||| | ||||| |||||||||||| | |||||||| | ||
Sbjct 135 GAAGAAGAAGACTAAGAAGAG-CACAGAGACGTACAAGATCTACCTATTCAAGGTGT-TG 192
Query 287 AAGCAAGTTCATCCAGATATTGGTATTTC-GAGCAAAGCTATGGGAATCATGAACAGTTT 345
|| ||||||||||| ||||| || || || | | ||||| ||||||||||||||||||||
Sbjct 193 AAACAAGTTCATCCTGATATCGGGATCTCTG-GAAAAGCCATGGGAATCATGAACAGTTT 251
Query 346 CATCAACGATATCTTCGAGAAA-TTGGCATC-GGAATCGTCGAAGCTTG-CGAGGTATAA 402
||||||||| | |||||||||| ||| | || |||||||||| | ||| | ||||||||
Sbjct 252 CATCAACGACACCTTCGAGAAAATTG-C-TCTGGAATCGTCGC-GATTGGCTAGGTATAA 308
Query 403 TAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCTG 461
||||| |||||||| || || |||| || || || || || || || || || ||||
Sbjct 309 CAAGAAACCGACGATCACGTCCCGGGAAATCCAAACCGCCGTAAGGCTCGTG-TTGCCTG 367
Query 462 GTGAGCTT-GCGAAACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCACCAGC 520
|||| || ||||| ||||||||||||||||| || || || || ||||||||||||||
Sbjct 368 GTGAA-TTAGCGAAGCACGCTGTTTCTGAGGGTACCAAAGCCGTCACCAAATTCACCAGT 426
Query 521 TCTT-GATT 528
|||| ||||
Sbjct 427 TCTTAGATT 435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5