BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484979
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46000.1 | Symbols: ADF2 | actin depolymerizing factor 2 | c... 907 0.0
AT3G45990.1 | Symbols: | Cofilin/tropomyosin-type actin-bindin... 241 8e-63
> AT3G46000.1 | Symbols: ADF2 | actin depolymerizing factor 2 |
chr3:16907451-16908999 REVERSE LENGTH=883
Length=883
Score = 907 bits (491), Expect = 0.0
Identities = 626/685 (91%), Gaps = 34/685 (5%)
Strand=Plus/Plus
Query 1 TCTTCTTCATTTCACCAAGAA-TTTTCTTTGAAATCGGTTTGATTTAGCCATGGCTAACG 59
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 128 TCTTCTTCATTTCACCAGGAACTTTTATTTGAAATCGGTTTGATTTAGCCATGGCAAACG 187
Query 60 CGGCGTCGGGGATGGCTGTGCATGATGATTGCAAGCTAAAATTTATGGAACTGAAGGCGA 119
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 188 CGGCATCGGGAATGGCTGTGCATGATGATTGCAAGCTGAAATTTATGGAACTGAAGGCGA 247
Query 120 AACGAACATTCCGTACCATAGTCTACAAGATTGAGGACAAACAAGTGATTGTAGAGAAAC 179
|| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 248 AAAGAACATTCCGTACCATAGTCTACAAGATTGAGGATAAGCAAGTGATTGTAGAGAAAC 307
Query 180 TCGGTGAACCTGAACAATCATATGATGACTTTGCAGCAAGTCTTCCAGCTGATGAATGTC 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 308 TCGGTGAACCTGAACAATCATATGATGACTTTGCAGCTAGTCTTCCAGCTGATGATTGCC 367
Query 240 GATATTGCATTTATGATTTCGACTTTGTCACTGCGGAGAACTGCCAGAAGAGCAAGATAT 299
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 368 GATATTGCATTTACGATTTCGACTTTGTCACTGCGGAGAACTGCCAGAAGAGCAAGATCT 427
Query 300 TCTTCATTGCATGGTCTCCGGACACTGCTAAAGTGAGAGACAAGATGATTTACGCTAGCT 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 428 TCTTCATTGCATGGTCTCCGGACACTGCCAAAGTGAGAGACAAGATGATTTACGCGAGCT 487
Query 360 CTAAGGATAGGTTCAAGAGAGAACTAGATGGAATTCAGGTGGAACTTCAAGCTACCGATC 419
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 488 CTAAAGATAGGTTCAAGAGAGAACTAGATGGAATTCAAGTGGAACTTCAAGCTACTGATC 547
Query 420 CAACCGAAATGGGTCTTGATGTTTTCAAAAGCCGCACCAACTAAG-AAAA-A------T- 470
|||| |||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 548 CAACAGAAATGGGTCTTGATGTTTTCAAAAGCCGCACCAACTAAGTAAAACAAAACCCTG 607
Query 471 T--G---A----A-TAAGTTTGGTTTCTGGAGTGAATATGTTTCCTCTGACTGTTATGAA 520
| | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TAAGGGCATTTGAATAAGTTTGGTTTCTGGAGTGAATATGTTTCCTCTGACTGTTATGAA 667
Query 521 AACTTTTTAACA-----A-CTTCATTCTACTTGGTATTATTGTCTGTCTTTGATGTGTTA 574
|||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 668 AACTTTTTAACACCTTCAACTTCATTCTACTTGGTATTATTGTATGTCTTTGATGTGTTA 727
Query 575 TGTGCGCCTTGTGATGGTTTTCAATTAGTTA-ATATATACAATACTTGAAATCAGATTTG 633
|||| ||||||||||||||||||||||||| | || ||||||||||||||||||||| |
Sbjct 728 TGTGTGCCTTGTGATGGTTTTCAATTAGTTTTACATGTACAATACTTGAAATCAGATT-G 786
Query 634 GTGTTATTGCTAGGCTTCAAGCCTT 658
| | |||||||||||||||||
Sbjct 787 -T-T----GCTAGGCTTCAAGCCTT 805
> AT3G45990.1 | Symbols: | Cofilin/tropomyosin-type actin-binding
protein family | chr3:16900778-16904136 REVERSE LENGTH=402
Length=402
Score = 241 bits (130), Expect = 8e-63
Identities = 331/420 (79%), Gaps = 45/420 (11%)
Strand=Plus/Plus
Query 71 ATGGCTGTGCATGATGATTGCAAGCTAAAATT-TATGGAACTGAAGGCGAAACGAACATT 129
|||| | |||||||||| |||||||||| ||| | |||||||||||| || |||||||||
Sbjct 1 ATGGTTTTGCATGATGACTGCAAGCTAACATTCT-TGGAACTGAAGGAGAGACGAACATT 59
Query 130 CCGTACCATAGTCTACAAGATTGAGGACAA-A--CAAGTGATTGTAGAG----A--A--A 178
|||| ||||||||||||||||||||||||| | ||||||||||||||| | | |
Sbjct 60 CCGTTCCATAGTCTACAAGATTGAGGACAACATGCAAGTGATTGTAGAGAAACATCACTA 119
Query 179 C-------T-C--GGTGAACCTGAACAATCATATGATGACTTTGC-AGCAAGTCTTCCAG 227
| | | || |||| ||||||||||||||| || ||||| | | ||||||||||
Sbjct 120 CAAAAAAATGCATGGCGAACGTGAACAATCATATGAGGAGTTTGCAAAC-AGTCTTCCAG 178
Query 228 CTGATGAATGTCGATATTG-CATTTAT-GATTTCGACTTTGTCACTGCGGAGAACTGCCA 285
|||||||||| ||||| || ||||| | ||| |||| || ||| | | || |
Sbjct 179 CTGATGAATGCCGATA-TGCCATTT-TGGATATCGAATTCGTC-C--C--AG----G--- 224
Query 286 GAAGAGCAAGATATT-CTTCATTGCATGGTCTCCGGACACTGCTAAAG-TGAGAGACAAG 343
| |||| ||||| || |||||| || |||||||| |||||| ||| ||||| | |||
Sbjct 225 GGAGAGAAAGAT-TTGCTTCATCGCGTGGTCTCCATCCACTGC-CAAGATGAGAAAGAAG 282
Query 344 ATGATTTACGCTAGCTCTAAGGATAGGTTCAAGAGAGAACTAGATGGAATTCAGGTGGAA 403
||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 283 ATGATTTACTCGAGCACTAAGGATAGGTTCAAGAGAGAACTAGATGGAATTCAAGTGGAG 342
Query 404 CTTCAAGCTACCGATCCAACCGAAATGGGTCTTGATGTTTTCAAAAGCCGCACCAACTAA 463
|||| || || |||| |||||| || ||||||||| | ||| | |||||| |||||||
Sbjct 343 TTTCACGCAACTGATCTAACCGATATAAGTCTTGATGCTATCAGACGCCGCATCAACTAA 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5