BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484981
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46010.2 | Symbols: ADF1, atadf, ATADF1 | actin depolymerizi... 719 0.0
AT3G46000.1 | Symbols: ADF2 | actin depolymerizing factor 2 | c... 320 1e-86
AT5G59890.1 | Symbols: ADF4, ATADF4 | actin depolymerizing fact... 207 1e-52
> AT3G46010.2 | Symbols: ADF1, atadf, ATADF1 | actin depolymerizing
factor 1 | chr3:16909363-16910814 REVERSE LENGTH=905
Length=905
Score = 719 bits (389), Expect = 0.0
Identities = 499/548 (91%), Gaps = 23/548 (4%)
Strand=Plus/Plus
Query 287 GCATGTCTTCCAGCTGATGAATGCCGTTATGCAATTTACGACTTTGACTTTGTCACTGCT 346
||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||
Sbjct 341 GCATGTCTTCCAGCTGATGAATGCCGTTACGCCATTTACGATTTTGACTTTGTAACTGCT 400
Query 347 GAGAACTGCCAGAAGAGCAAGATCTTCTTCATCGCGTGGTGCCCGGACATAGCGAAGGTG 406
||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 401 GAGAATTGCCAGAAGAGCAAGATCTTCTTCATCGCGTGGTGTCCGGATATTGCTAAGGTG 460
Query 407 AGAAGCAAGATGATCTACGCGAGCTCTAAAGACAGGTTCAAGAGGGAACTAGACGGAATT 466
|||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||
Sbjct 461 AGAAGCAAGATGATCTACGCGAGCTCCAAGGACAGGTTCAAGAGGGAACTAGATGGGATT 520
Query 467 CAAGTAGAGCTTCAGGCAACCGATCCAACTGAGATGGATCTCGATGTTTTCAGAAGCCGT 526
||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 521 CAAGTAGAGCTACAGGCAACTGATCCAACAGAGATGGATCTCGATGTTTTCAGGAGCCGT 580
Query 527 GCCAACTAAAAAGTAAAACCCAAAG---ATTAT--T-ATCCCCTTGAAAGATCTATTCTC 580
|||||||||||||||||| |||||| ||||| | |||||||||||||||||||||||
Sbjct 581 GCCAACTAAAAAGTAAAAACCAAAGTTTATTATCATCATCCCCTTGAAAGATCTATTCTC 640
Query 581 TTATTCTGTTATTTTTGAGTGATGGTAC---T--TT-ATTATGTTTTTACATTGTGTTGT 634
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 641 TTATTCTGTTATTTTTGAGTGATGGTACTGGTACTTGATTATGTTTTTACATTGTGTTGT 700
Query 635 CAAGGTATGAACC--T-AACAACTTCATTCTATCGGTGTTTC-GTCATT-TGTTC-ATGT 688
||| |||||||| | ||||||||||||||||||||||||| ||| || ||||| ||||
Sbjct 701 GAAGTTATGAACCTATAAACAACTTCATTCTATCGGTGTTTCGGTC-TTGTGTTCGATGT 759
Query 689 TATCTTTGGTTTCT-AAATGGTGTGTAAGGACCCCAAATCGTCTATTGAAGATGAACCCT 747
| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 TGTCTTTGGTTT-TAAAATGGTGTGTAAGGACCCCAAATCGTCTATTGAAGATGAACCCT 818
Query 748 TTTGGGTAT--CATTTATGAAATGGATGATTGAAAGTTTCCCTCACAATTGTATGAAACA 805
||| ||||| |||| ||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 819 TTTAGGTATATCATTGATGAAATGGATGATTAAAAGTTTCTCTCACATTTGTATGAAACA 878
Query 806 ACTGTCTA 813
||||||||
Sbjct 879 ACTGTCTA 886
Score = 230 bits (124), Expect = 2e-59
Identities = 132/136 (97%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 152 GCGAACGCAGCATCTGGAATGGCTGTGCATGATGATTGCAAGCTGAGATTTCTGGAACTG 211
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GCGAACGCGGCATCTGGAATGGCTGTGCATGATGATTGCAAGCTGAGATTTCTGGAACTG 232
Query 212 AAGGCGAAAAGGACACACCGTTTCATTGTTTACAAGATTGAGGAGAAGCAGAAGCAAGTG 271
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 233 AAGGCTAAAAGGACACACCGTTTCATAGTTTACAAGATTGAGGAGAAGCAGAAGCAAGTT 292
Query 272 GTTGTTGAGAAAGTTG 287
||||||||||||||||
Sbjct 293 GTTGTTGAGAAAGTTG 308
> AT3G46000.1 | Symbols: ADF2 | actin depolymerizing factor 2 |
chr3:16907451-16908999 REVERSE LENGTH=883
Length=883
Score = 320 bits (173), Expect = 1e-86
Identities = 455/581 (78%), Gaps = 60/581 (10%)
Strand=Plus/Plus
Query 15 aaaagaaattgagaagaagaaaaaaaa-aaaGTGA---CCGA-ATTCTCC-GTCGATTGT 68
|||||||| | ||||||||||||||| || || | | | |||||| | |||| |
Sbjct 37 AAAAGAAACAGTGAAGAAGAAAAAAAAGAAGGTCATTTTC-ATTTTCTCCATTTGATTTT 95
Query 69 AGCCG-CCGGGAG-AAATATCTTCTT--CTTCTTCCTCTTTCGTTAAACAACGAA-TTTG 123
|||| || |||| |||||||||||| | ||||| || ||| || || | ||| |||
Sbjct 96 TGCCGACC-GGAGAAAATATCTTCTTGCCGTCTTCTTC-TTCATTTCACCAGGAACTTTT 153
Query 124 CTCTGATACT-AGTGTG-TTTCCAGCCATGGCGAACGCAGCATCTGGAATGGCTGTGCAT 181
| ||| | | || || ||| ||||||||| ||||| ||||| |||||||||||||||
Sbjct 154 ATTTGA-AATCGGTTTGATTT--AGCCATGGCAAACGCGGCATCGGGAATGGCTGTGCAT 210
Query 182 GATGATTGCAAGCTGAGATTTCTGGAACTGAAGGCGAAAAGGACACACCGTTTCATTGTT 241
|||||||||||||||| |||| ||||||||||||||||||| ||| |||| ||| ||
Sbjct 211 GATGATTGCAAGCTGAAATTTATGGAACTGAAGGCGAAAAGAACATTCCGTACCATAGTC 270
Query 242 TACAAGATTGAGG---AG-AAG-CA--G-A-AGCAAGT-GGTTG---TTG----A-GA-A 282
||||||||||||| || ||| | | | || || | || || || | | |
Sbjct 271 TACAAGATTGAGGATAAGCAAGTGATTGTAGAGAAACTCGG-TGAACCTGAACAATCATA 329
Query 283 --A-G---TTGCA--T-GTCTTCCAGCTGATGAATGCCGTTA-TGCAATTTACGACTTT- 331
| | ||||| | |||||||||||||||| ||||| || ||| |||||||| |||
Sbjct 330 TGATGACTTTGCAGCTAGTCTTCCAGCTGATGATTGCCGATATTGC-ATTTACGA-TTTC 387
Query 332 GACTTTGTCACTGCTGAGAACTGCCAGAAGAGCAAGATCTTCTTCATCGCGTGGTGC-CC 390
|||||||||||||| |||||||||||||||||||||||||||||||| || |||| | ||
Sbjct 388 GACTTTGTCACTGCGGAGAACTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGT-CTCC 446
Query 391 GGACA-TAGCGAAGGTGAGA-AGCAAGATGATCTACGCGAGCTCTAAAGACAGGTTCAAG 448
||||| | || || |||||| | ||||||||| ||||||||||||||||| |||||||||
Sbjct 447 GGACACT-GCCAAAGTGAGAGA-CAAGATGATTTACGCGAGCTCTAAAGATAGGTTCAAG 504
Query 449 AGGGAACTAGACGGAATTCAAGTAGAGCTTCAGGCAACCGATCCAACTGAGATGGATCTC 508
|| |||||||| ||||||||||| || ||||| || || |||||||| || |||| |||
Sbjct 505 AGAGAACTAGATGGAATTCAAGTGGAACTTCAAGCTACTGATCCAACAGAAATGGGTCTT 564
Query 509 GATGTTTTCAGAAGCCGTGCCAACTAA--AAAGTAAAACCC 547
|||||||||| |||||| |||||||| ||| |||||||
Sbjct 565 GATGTTTTCAAAAGCCGCACCAACTAAGTAAAACAAAACCC 605
> AT5G59890.1 | Symbols: ADF4, ATADF4 | actin depolymerizing factor
4 | chr5:24122412-24123912 FORWARD LENGTH=869
Length=869
Score = 207 bits (112), Expect = 1e-52
Identities = 154/174 (89%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 116 CGAATTTG-CTCTGATACTAG-TGTGTTTCCAGCCATGGCGAACGCAGCATCTGGAATGG 173
|||| ||| |||||| || | | || || |||||||||| || || || || |||||||
Sbjct 101 CGAAATTGTCTCTGACAC-CGTTTTGATT-CAGCCATGGCTAATGCTGCGTCAGGAATGG 158
Query 174 CTGTGCATGATGATTGCAAGCTGAGATTTCTGGAACTGAAGGCGAAAAGGACACACCGTT 233
| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 159 CAGTCCATGATGACTGCAAGCTAAGATTTCTGGAACTGAAGGCGAAAAGGACACACCGTT 218
Query 234 TCATTGTTTACAAGATTGAGGAGAAGCAGAAGCAAGTGGTTGTTGAGAAAGTTG 287
||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 219 TCATTGTCTACAAGATTGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTG 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5