BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484983
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 767 0.0
AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein ... 599 1e-170
AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr... 473 6e-133
AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-76... 399 1e-110
AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12... 359 2e-98
AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15... 342 2e-93
AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19... 305 2e-82
> AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
chr3:16913448-16914131 REVERSE LENGTH=684
Length=684
Score = 767 bits (415), Expect = 0.0
Identities = 491/527 (93%), Gaps = 7/527 (1%)
Strand=Plus/Plus
Query 43 GAAACtttttttCTTGTGAAGAAAATGGCACCAAAGGCAGAGAAGAAGCCGGCAGAGAAG 102
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAAAC-TTTTTTCGTGTGAAGAAAATGGCACCAAAGGCAGAGAAGAAGCCGGCAGAGAAG 116
Query 103 AAACCAGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAAGCC 162
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 117 AAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCCTGCAGAGAAGAAACCAAAAGCC 176
Query 163 GGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGAGACaagaagaagaagatgaagaag 222
||||||||||||||||| |||||||| |||||||| || |||||||||||||||||||||
Sbjct 177 GGCAAGAAACTCCCGAAGGAAGCCGGTGCCGGCGGCGATAAGAAGAAGAAGATGAAGAAG 236
Query 223 aagaGTGTTGAGACATACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCATCCAGAT 282
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 237 AAGAGTGTTGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGAT 296
Query 283 ATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAGTTTCATTAACGATATCTTCGAG 342
||||| || ||||||||||||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 297 ATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAG 356
Query 343 AAATTGGCATCGGAATCGTCGAAGCTTGCTAGGTATAATAAGAAGCCAACGATTACTTCT 402
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 357 AAATTGGCATCGGAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCT 416
Query 403 AGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGGTGAGCTCGCGAAACACGCTGTT 462
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 417 CGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGGTGAGCTTGCGAAACATGCTGTT 476
Query 463 TCTGAAGGAACTAAGGCTGTGACTAAATTCACCAGCTCTTGAATTGTGTGGGTCTTGTTG 522
||||||||||||||||| |||||||| || || ||||||||||||||| | ||||||||
Sbjct 477 TCTGAAGGAACTAAGGCGGTGACTAAGTTTACTAGCTCTTGAATTGTG-GA-TCTTGTTG 534
Query 523 AA-TCGAA-TT-GTAAAATTAGGGTTTTT-AGATTTGATGGTTGTTG 565
|| |||| || ||||||||||||||||| |||||||||||||||||
Sbjct 535 AAATCGATGTTTGTAAAATTAGGGTTTTTTAGATTTGATGGTTGTTG 581
> AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein
| chr3:16897287-16898013 REVERSE LENGTH=727
Length=727
Score = 599 bits (324), Expect = 1e-170
Identities = 393/427 (92%), Gaps = 2/427 (0%)
Strand=Plus/Plus
Query 82 GAGAAGAAGCCGGCAG-AGAAGAAACCAGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCC 140
|||||||| || || | | |||||||||| |||||||||||||||||||||||||||||
Sbjct 100 GAGAAGAAACCAGCCGCCG-AGAAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCC 158
Query 141 GGCGGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGAGA 200
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 159 GGCGGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAGGAAGCCGGGGCCGGCGGCGA 218
Query 201 CaagaagaagaagatgaagaagaagaGTGTTGAGACATACAAGATCTACATCTTCAAGGT 260
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 219 TAAGAAGAAGAAGATGAAGAAGAAGAGTGTGGAAACTTACAAGATCTACATCTTCAAGGT 278
Query 261 TCTGAAGCAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAG 320
|||||| |||||||||||||||||||| || |||||||| |||||||| || ||||||||
Sbjct 279 TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAGGCTATGGGTATTATGAACAG 338
Query 321 TTTCATTAACGATATCTTCGAGAAATTGGCATCGGAATCGTCGAAGCTTGCTAGGTATAA 380
|||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 339 TTTCATCAACGACATCTTCGAGAAATTGGCATCGGAATCTTCAAAGCTCGCTAGGTATAA 398
Query 381 TAAGAAGCCAACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTTCCTGG 440
|||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 399 CAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTCGTTCTTCCTGG 458
Query 441 TGAGCTCGCGAAACACGCTGTTTCTGAAGGAACTAAGGCTGTGACTAAATTCACCAGCTC 500
||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct 459 TGAGCTCGCTAAACACGCTGTTTCTGAAGGAACCAAGGCTGTTACCAAATTCACAAGCTC 518
Query 501 TTGAATT 507
|||||||
Sbjct 519 TTGAATT 525
> AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr5:24127128-24127935
FORWARD LENGTH=808
Length=808
Score = 473 bits (256), Expect = 6e-133
Identities = 359/409 (88%), Gaps = 6/409 (1%)
Strand=Plus/Plus
Query 101 AGAAACCAGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAAG 160
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 128 AGAAGCCGGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGG 187
Query 161 CCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGGCGGAGACaagaagaagaagatgaaga 220
|||| ||||| |||||||| ||||| || ||||| || ||||||||||| ||||||||||
Sbjct 188 CCGGAAAGAAGCTCCCGAAGGAAGCTGGTGCCGGAGGCGACAAGAAGAAAAAGATGAAGA 247
Query 221 agaagaGTGTTGAGACATACAAGATCTACATCTTCAAGGTTCTGAAGCAAGTTCATCCAG 280
|||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 248 AGAAGAGTGTCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCG 307
Query 281 ATATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAGTTTCATTAACGATATCTTCG 340
|||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 308 ATATCGGAATCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCG 367
Query 341 AGAAA-TTGGCATCG-GAATCGTCGAAGCTTGCTAGGTATAATAAGAAGCCAACGATTAC 398
|||| ||| | || || ||||||||||||| ||||| |||||||| || ||||| ||
Sbjct 368 AGAAGCTTG-C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCAC 425
Query 399 TTCTAGGGAGATTCAGACTGCTGTTAGACTTGTT-CTTCCTGGTGAGCTCGCGAAACACG 457
|||| ||||||||||||||||||| ||| ||| | |||||||| ||| | ||||| || |
Sbjct 426 TTCTCGGGAGATTCAGACTGCTGTGAGA-TTGGTGCTTCCTGGAGAGTTGGCGAAGCATG 484
Query 458 CTGTTTCTGAAGGAACTAAGGCTGTGACTAAATTCACCAGCTCTTGAAT 506
| |||||||| || ||||| || || || ||||||||||||||||||||
Sbjct 485 CCGTTTCTGAGGGGACTAAAGCCGTCACGAAATTCACCAGCTCTTGAAT 533
> AT5G22880.1 | Symbols: H2B, HTB2 | histone B2 | chr5:7651957-7652622
REVERSE LENGTH=666
Length=666
Score = 399 bits (216), Expect = 1e-110
Identities = 374/447 (84%), Gaps = 24/447 (5%)
Strand=Plus/Plus
Query 76 AAGGCAGAGAAGAAGCCGGCAGAGAAGAAACCAGTGGAGGAG-AAA-T-CAAAAGCCG-A 131
|||||||| ||||| || || ||||||||||| | | | ||| ||| | | ||||| |
Sbjct 62 AAGGCAGATAAGAAACCAGCGGAGAAGAAACC-G-GCA-GAGAAAACTCCGGCAGCCGAA 118
Query 132 -GA-AAGCTCCGGCGGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCC-GG 188
| ||| |||| |||||||||||||||||||| |||||||||||||| ||| || |
Sbjct 119 CCAGCAGCAGCGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAAGGAA-CCAGC 177
Query 189 CGCCGGCGGAGACaagaagaagaagatga--agaagaagaGTGTTGAGACATACAAGATC 246
|| || |||||||||||||||||||| || | ||||||| ||||||||||||||||||
Sbjct 178 CGGCGCCGGAGACAAGAAGAAGAAGA-GATCA-AAGAAGAACGTTGAGACATACAAGATC 235
Query 247 TACATCTTCAAGGT-TCTGAAGCAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTAT 305
|||||||||||||| | |||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 236 TACATCTTCAAGGTGT-TGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAAAGCCAT 294
Query 306 GGGAATCATGAACAGTTTCATTAACGATATCTTCGAGAAA-TTGGCATCG-GAATCGTCG 363
||||||||||||||||||||| || |||||||| |||||| ||| | | | || || |||
Sbjct 295 GGGAATCATGAACAGTTTCATCAATGATATCTTTGAGAAACTTG-C-TGGTGAGTCTTCG 352
Query 364 AAGCTTGCTAGGTATAATAAGAAGCCAACGATTACTTCTAGGGAGATTCAGACTGCTGTT 423
|||||||| ||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 353 AAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCGGTG 412
Query 424 AGACTTGTTCTT-CCTGGTGAGCTCGCGAAACACGCTGTTTCTGAAGGAACTAAGGCTGT 482
|||||||| || ||||| ||| | |||||||| |||||||||||||| |||||||| ||
Sbjct 413 AGACTTGTG-TTGCCTGGAGAGTTGGCGAAACATGCTGTTTCTGAAGGGACTAAGGCGGT 471
Query 483 GACTAAATTCACCAGCTCTT-GAATTG 508
|| || || || || |||| || |||
Sbjct 472 TACGAAGTTTACGAGTTCTTAGATTTG 498
> AT2G28720.1 | Symbols: | Histone superfamily protein | chr2:12326978-12327678
FORWARD LENGTH=701
Length=701
Score = 359 bits (194), Expect = 2e-98
Identities = 360/437 (82%), Gaps = 23/437 (5%)
Strand=Plus/Plus
Query 79 GCAGAGAAGAAGCCGGCAGAG-AAGAAACCAGTGGAGGAGAA-ATCAAA--AGCCGAGAA 134
|||||||| ||||| |||||| ||| ||| | || |||| | ||| |||||| ||
Sbjct 93 GCAGAGAAAAAGCCCGCAGAGAAAG-CTCCA--GCAGAAGAAGA-GAAAGTAGCCGAAAA 148
Query 135 AGCTCCGGCGGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCCGGCGCCGG 194
||| || || |||||||||||||||||||| || ||||| || |||||||| | | ||||
Sbjct 149 AGCACCAGCAGAGAAGAAACCAAAAGCCGGAAAAAAACTACCAAAAGAAGCAGTCACCGG 208
Query 195 CGGAGACaagaagaagaag--atgaag--aagaagaGTGTTGAGACATACAAGATCTACA 250
|||| | ||||||||||| | | || ||||| || |||||||||||||||||||
Sbjct 209 AGGAGTCGAGAAGAAGAAGAAACG-AGTCAAGAAAAGCACAGAGACATACAAGATCTACA 267
Query 251 TCTTCAAGGT-TCTGAAGCAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTATGGGA 309
|||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 268 TCTTCAAGGTGT-TGAAACAAGTTCATCCAGATATTGGAATCTCAAGTAAAGCTATGGGG 326
Query 310 ATCATGAACAGTTTCATTAACGATATCTTCGAGAAA-TTG-GCATCGGAATCGTCGAAGC 367
|| ||||||||||| || || ||||| ||||||||| ||| ||| | || | || ||
Sbjct 327 ATTATGAACAGTTTTATCAATGATATATTCGAGAAACTTGCGCAA-G-AAGCTTCAAAA- 383
Query 368 TT-GCTAGGTATAATAAGAAGCCAACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGA 426
|| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 384 TTAGCTAGGTATAATAAGAAACCTACGATTACTTCTAGGGAGATTCAGACAGCTGTTAGA 443
Query 427 CTTGTTCTT-CCTGGTGAGCTCGCGAAACACGCTGTTTCTGAAGGAACTAAGGCTGTGAC 485
|| || || |||||||| || || || || |||||||||||||||||||||||||| ||
Sbjct 444 CTAGTG-TTACCTGGTGAACTTGCTAAGCATGCTGTTTCTGAAGGAACTAAGGCTGTTAC 502
Query 486 TAAATTCACCAGCTCTT 502
||| || || |||||||
Sbjct 503 TAAGTTTACTAGCTCTT 519
> AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15736764-15737368
FORWARD LENGTH=605
Length=605
Score = 342 bits (185), Expect = 2e-93
Identities = 337/408 (83%), Gaps = 20/408 (5%)
Strand=Plus/Plus
Query 97 GAGAAGAAACCAGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCA 156
||||||||||| | ||| ||||| | ||||| |||||||||||||||||| | ||
Sbjct 87 GAGAAGAAACCGGCAGAGAAGAAA-C--CAGCCGGGAAAGCTCCGGCGGAGAA-ACTCCC 142
Query 157 AAAGCCGG-CAAGAAACTCCCG-AAAGAAGCCGGCGCCGGCGGAGACaagaagaagaaga 214
|||| ||| |||||| | | | ||||| ||||| | || ||| |||||||||||||
Sbjct 143 AAAGGCGGAGAAGAAAAT-CAGCAAAGACGCCGGAGGAAGC-GAG--AAGAAGAAGAAGA 198
Query 215 tgaa--gaagaagaGTGTTGAGACATACAAGATCTACATCTTCAAGGTTCTGAAGCAAGT 272
|| ||||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 199 --AATCGAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGT 256
Query 273 TCATCCAGATATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAGTTTCATTAACGA 332
|||||||||| |||||||||| | ||||||||||| || |||||||||||||| || ||
Sbjct 257 TCATCCAGATGTTGGAATCTCTGGGAAAGCTATGGGGATTATGAACAGTTTCATCAATGA 316
Query 333 TATCTTCGAGAAA-TTGGCATC-GGAATCGTCGAAGCTTGCTAGGTATAATAAGAAGCCA 390
|||||||||||| ||| | || ||||||||| ||||| |||||||| |||||||||||
Sbjct 317 CATCTTCGAGAAACTTG-C-TCAGGAATCGTCAAAGCTCGCTAGGTACAATAAGAAGCCG 374
Query 391 ACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCTGGTGAGCTCGC 449
|||||||| || ||||||||||| || ||||| |||||||| || ||||| || |||||
Sbjct 375 ACGATTACATCGAGGGAGATTCAAACCGCTGTGAGACTTGTG-TTGCCTGGAGAACTCGC 433
Query 450 GAAACACGCTGTTTCTGAAGGAACTAAGGCTGTGACTAAATTCACCAG 497
||||| || ||||||||||| || ||||| || || |||||||||||
Sbjct 434 TAAACATGCGGTTTCTGAAGGCACGAAGGCGGTTACCAAATTCACCAG 481
> AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19889358-19889774
FORWARD LENGTH=417
Length=417
Score = 305 bits (165), Expect = 2e-82
Identities = 341/422 (81%), Gaps = 28/422 (7%)
Strand=Plus/Plus
Query 88 AAGCCGGCAGAGAAGAAACCAG-TGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGA 146
||| |||||||||||||||| | ||| | || || | ||| || ||||||||||| ||
Sbjct 11 AAG-CGGCAGAGAAGAAACCGGCTGG-GAAG-AAGC--CAGCAGAAAAAGCTCCGGCAGA 65
Query 147 GAAGA-AACCAAAAGCCGG-CAAGAA-ACTC-CCGAAAGAAGCCGGCGCCGGCGGAGACa 202
||| | ||| |||| ||| ||||| | || || || ||| || | ||| | | |
Sbjct 66 GAA-ATTACC-AAAGGCGGAGAAGAAGA-TCACC-AAGGAA---GGTGGAAGCGAAAAGA 118
Query 203 agaagaagaagat-gaagaagaagaGTGTTGAGACATACAAGATCTACATCTTCAAGGTT 261
|||||||||| || ||||||||| | | ||||| ||||||||||||||||||||||||
Sbjct 119 AGAAGAAGAA-ATCGAAGAAGAACA---TCGAGACGTACAAGATCTACATCTTCAAGGTT 174
Query 262 CTGAAGCAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTATGGGAATCATGAACAGT 321
||||| ||||||||||| ||||| |||||||| | ||||| ||||| ||||||||||||
Sbjct 175 CTGAAACAAGTTCATCCTGATATCGGAATCTCCGGGAAAGCGATGGGGATCATGAACAGT 234
Query 322 TTCATTAACGATATCTTCGAGAAATTGGCATC-GGAATCGTCGAAGCTTG-CTAGGTATA 379
||||| ||||| |||||||||||| | || || |||||| ||| | ||| ||||||| |
Sbjct 235 TTCATCAACGACATCTTCGAGAAACTAGC-TCAGGAATCATCGC-GATTGGCTAGGTACA 292
Query 380 ATAAGAAGCCAACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-CCT 438
| ||||| || ||||| |||||| |||| |||||||| || || |||||||| || |||
Sbjct 293 ACAAGAAACCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTG-TTGCCT 351
Query 439 GGTGAGCTCGCGAAACACGCTGTTTCTGAAGGAACTAAGGCTGTGACTAAATTCACCAGC 498
|| |||||| |||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 352 GGAGAGCTCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACTAAATTCACTAGC 411
Query 499 TC 500
||
Sbjct 412 TC 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5