BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484989
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46090.1 | Symbols: ZAT7 | C2H2 and C2HC zinc fingers superf... 778 0.0
AT3G46080.1 | Symbols: | C2H2-type zinc finger family protein ... 676 0.0
AT3G46070.1 | Symbols: | C2H2-type zinc finger family protein ... 337 9e-92
> AT3G46090.1 | Symbols: ZAT7 | C2H2 and C2HC zinc fingers superfamily
protein | chr3:16926216-16926850 REVERSE LENGTH=635
Length=635
Score = 778 bits (421), Expect = 0.0
Identities = 572/640 (89%), Gaps = 30/640 (5%)
Strand=Plus/Plus
Query 1 CCTAGAAGTCACTAAGTC-ATTTCAAAATGGTTGCGAGAAGTGAGGAAATTGTGAAAGT- 58
|||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 15 CCTAGAAGTCACTAAGTCGA-TTCAAAATGGTTGCGAGAAGTGAGGAAATTGTGATAGTG 73
Query 59 G--GAAGATACGGCGGCGAAGTGTTTGATGTTGTTATCAAGAGTTGGAGAATGCGGCGGT 116
| ||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 74 GAAGAAGATACGACTGCGAAATGTTTGATGTTGTTATCAAGAGTCGGAGAATGCGGCGGC 133
Query 117 TACGGCGGAGGAGA-GAAACGTGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTCTCATC 175
| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GGCTGCGGGGGAGATG-AACGTGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTCTCATC 192
Query 176 GTTTCAAGCTTTAGGAGGTCATCGTGCAAGTCATAAGAAACTCATTAACAGTCACGATAT 235
|||||||||||| ||||||||||||||||| || |||||||| || |||||| || ||
Sbjct 193 GTTTCAAGCTTTGGGAGGTCATCGTGCAAGCCACAAGAAACTTATCAACAGTGACAATCC 252
Query 236 ATCACTTCTTGGATCATTGTCTAACAAGAAGACTAAAACGATGACGTCTCATCCTTGTCC 295
||||||||||||||| ||||| |||||||| ||| || | |||||||||||||||||
Sbjct 253 ATCACTTCTTGGATCCTTGTCCAACAAGAAAACT--AA--A--ACGTCTCATCCTTGTCC 306
Query 296 GATATGTGGCGTGGAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAGACATAG 355
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GATATGTGGAGTGAAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAGACATAG 366
Query 356 GAACGAGAAAG-CTTCTGG-TACGTTGGTTACACGTTCTTTTTTACCGGAGACGACGACT 413
||||||||||| || | || | |||||||||||||||||||| ||||||||||||||||
Sbjct 367 GAACGAGAAAGTCT-CAGGCT-CGTTGGTTACACGTTCTTTTCTACCGGAGACGACGAC- 423
Query 414 ACGGTGACGACTTTGAAGAAATCGAGTAGTGGGAAGAGAGTGGCTTGTTTGGATTTTGAC 473
||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 424 --GGTGACGGCTTTGAAGAAATTTAGTAGTGGGAAGAGAGTGGCTTGTTTGGATTTGGAC 481
Query 474 TTGGATTCGATGGAGAGTTTGGTCAATTGGAAGTTGGAGTTGGGAAGAACGATTTCTTG- 532
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TTAGATTCGATGGAGAGTTTGGTCAATTGGAAGTTGGAGTTGGGAAGAACGATTTCTTGG 541
Query 533 A-TTC-GTTTTCTTGCTTTATCATACAGTTTCACATGGTTTTGTAATCTTTGTTGATCCA 590
| || ||||| | | || | ||||||||||||||| ||||||||||||||||||||||
Sbjct 542 AGTTAAGTTTT-TGGGTTG-T-ATACAGTTTCACATGATTTTGTAATCTTTGTTGATCCA 598
Query 591 TTTATATATCTTACCGATCGATGTGTATATTATTTTGATA 630
|| |||| |||||||||||||| ||||||||||||||
Sbjct 599 ---AT-TATCGTACCGATCGATGTGAATATTATTTTGATA 634
> AT3G46080.1 | Symbols: | C2H2-type zinc finger family protein
| chr3:16922753-16923247 REVERSE LENGTH=495
Length=495
Score = 676 bits (366), Expect = 0.0
Identities = 466/511 (91%), Gaps = 20/511 (4%)
Strand=Plus/Plus
Query 27 ATGGTTGCGAGAAGTGAGGAAATTGTGAAAGTGGAAGATACGGCGGCGAAGTGTTTGATG 86
||||||||||||||||||||| ||| || ||||||||||||||||||||| |||||||||
Sbjct 1 ATGGTTGCGAGAAGTGAGGAAGTTGAGATAGTGGAAGATACGGCGGCGAAATGTTTGATG 60
Query 87 TTGTTATCAAGAGTTGGAGAATGCGGCGGTTACGGCGGAGGAGAGAAACGTGTTTTCCGA 146
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 61 TTGTTATCAAGAGTTGGAGAATGCGGCGG--A----GGAGGAGAGAAACGAGTTTTCCGA 114
Query 147 TGCAAGACTTGTCTTAAAGAGTTCTCATCGTTTCAAGCTTTAGGAGGTCATCGTGCAAGT 206
||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 115 TGCAAGACTTGTCTTAAAGAGTTTTCGTCGTTTCAAGCTTTGGGAGGTCATCGTGCAAGC 174
Query 207 CATAAGAAACTCATTAACAGTCA-CGATATATCACTTCTTGGATCATTGTCTAACAAGAA 265
|| |||||||||||||||||| | |||| ||||||||||||||| ||||||||||||||
Sbjct 175 CACAAGAAACTCATTAACAGT-AGCGATCCATCACTTCTTGGATCCTTGTCTAACAAGAA 233
Query 266 GACTAAAACGATGACGTCTCATCCTTGTCCGATATGTGGCGTGGAGTTTCCGATGGGACA 325
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 234 AACTAAAACGGCGACGTCTCATCCTTGTCCGATATGTGGCGTGGAGTTTCCGATGGGGCA 293
Query 326 AGCTCTTGGTGGTCACATGAGGAGACATAGGAACGAGAAAGCTTCT---GGTACGTTGGT 382
|||||||||||||||||||||||||||||||| |||||||| || || ||||||||
Sbjct 294 AGCTCTTGGTGGTCACATGAGGAGACATAGGAGTGAGAAAGCCTCACCAGGCACGTTGGT 353
Query 383 TACACGTTCTTTTTTACCGGAGACGACGACTACGGTGACGACTTTGAAGAAATCGAGTAG 442
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 354 TACACGTTCTTTTTTACCGGAGACGACGAC---GGTGACGACTTTGAAAAAATCGAGTAG 410
Query 443 TGGGAAGAGAGTGGCTTGTTTGGATTTTGACTTGGATTCGATGGAGAGTTTGGTCAATTG 502
|||||||||||||||||||||||| || | | |||||||||||||||| ||||||||
Sbjct 411 TGGGAAGAGAGTGGCTTGTTTGGACTT--A---G-ATTCGATGGAGAGTTTAGTCAATTG 464
Query 503 GAAGTTGGAGTTGGGAAGAACGATTTCTTGA 533
|||||||||||||||||||||||||||||||
Sbjct 465 GAAGTTGGAGTTGGGAAGAACGATTTCTTGA 495
> AT3G46070.1 | Symbols: | C2H2-type zinc finger family protein
| chr3:16920445-16920957 REVERSE LENGTH=513
Length=513
Score = 337 bits (182), Expect = 9e-92
Identities = 396/491 (81%), Gaps = 48/491 (10%)
Strand=Plus/Plus
Query 63 GATACGGCGGCGAAG-TGTTTGATGTTGTTATCAAGAGTTGGAGAATGCGGCGGTTACGG 121
|||||||||||| || ||| |||||||||||||| || |||||||| | |||
Sbjct 37 GATACGGCGGCG-AGCTGTCTGATGTTGTTATCAGGAATTGGAGAA-----C----ACGA 86
Query 122 CGGAGGAGAGAAACGTGTTTTCCGATGCAAGACTTGTCTTAAAGAGTTCTCA-TCGTTTC 180
|||| || ||||||||||||||||||||||||||||| | ||| ||| | ||||| |
Sbjct 87 CGGAAGAAAGAAACGTGTTTTCCGATGCAAGACTTGTGAGAGAGACTTC-GATTCGTTCC 145
Query 181 AAGCTTTAGGAGGTCATCGTGCAAGTCA-TAAGAAACTCATTAACAGTCACGATATATCA 239
||||||||||||| || |||||||| || | |||||| | |||||| |||||| ||||
Sbjct 146 AAGCTTTAGGAGGCCACCGTGCAAGCCACT-CGAAACTAACCAACAGTGACGATAAATCA 204
Query 240 CTTCTTGGATCATTGTCTAACAAGAAGACT-AAA--ACGA-T-----GACGTCTCATCCT 290
|||| ||||||| | || |||||| || ||| |||| | |||| ||||| ||
Sbjct 205 CTTCCTGGATCA---CCAAAGAAGAAGCCTAAAACTACGACTACGACGACGGCTCATACT 261
Query 291 TGTCCGATATGTGGCGTGGAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAGA 350
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 262 TGTCCGATTTGTGGCTTGGAGTTTCCGATGGGACAAGCTCTTGGTGGTCACATGAGGAAA 321
Query 351 CATAGGAACGAGAAAG--C-------TTCTGGT-ACG--TTGGTTACACGTTCTTTTTTA 398
|||||||||||||||| | || | ||| |||||||| | |||||| |
Sbjct 322 CATAGGAACGAGAAAGAACGAGAAAAGGCTTCTAACGTATTGGTTACGCATTCTTTCATG 381
Query 399 CCGGAGACGACGACTACGGTGACGACTTTGAAGAAATCGAGTAGTGGGAAGAGAGTGGCT 458
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 CCGGAGACGAC-A--ACGGTGACGACTTTGAAGAAATCGAGTAGTGGGAAGAGAGTGGCG 438
Query 459 TGTTTGGATTTTGACTTGGA-TTCGATGGAGAG-TTTGGTCAATT-GGAAGTTGGAGTTG 515
||||||||||| ||||| | |||| ||||||| |||| |||| |||| |||||||||
Sbjct 439 TGTTTGGATTTCGACTTA-ACTTCGGTGGAGAGCTTTG-TCAACACGGAA-TTGGAGTTG 495
Query 516 GGAAGAACGAT 526
|||||||||||
Sbjct 496 GGAAGAACGAT 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5