BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg484997
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46200.1 | Symbols: aTNUDT9, NUDT9 | nudix hydrolase homolog... 1650 0.0
> AT3G46200.1 | Symbols: aTNUDT9, NUDT9 | nudix hydrolase homolog
9 | chr3:16969266-16971204 FORWARD LENGTH=1140
Length=1140
Score = 1650 bits (893), Expect = 0.0
Identities = 1057/1134 (93%), Gaps = 19/1134 (2%)
Strand=Plus/Plus
Query 1 GAGCTTCTTCCATGGCGAAACTAGCACAAGAGATGAATCCTGAAGGTTCACGATACCAGC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 7 GAGCTTCTTCCATGGCGAAACTAGCAGAAGAGATGAATCCTGAAGGTTCACGATACCAGC 66
Query 61 TTCTTCTCTCATGTCCTTCTGGCCTCTCTCCGTCTCAGGTCTCAGTGGATTTCTCGAAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TTCTTCTCTCATGTCCTTCTGGCCTCTCTCCGTCTCAGGTCTCAGTGGATTTCTCGAAAT 126
Query 121 CGCATGATCGGATTCCTCATCCTGATCCTGATCTCGAAGATTCTATTTCTGAGGTTTGGG 180
|||||||||||||||||| || ||||||| ||| |||||||||||||| |||||||||
Sbjct 127 CGCATGATCGGATTCCTCGTCAAGATCCTGGTCTAGAAGATTCTATTTCACAGGTTTGGG 186
Query 181 AGCAAAGATCACAGAGCAATTCATCATTGTTCAATGGCCAAAAATTTAGGTATGGATCAT 240
|||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 187 AGCAGAGATCACAGGGAAATTCATCATTGTTCAATGGCCAAAAATTTAGGTATGGAGGAT 246
Query 241 ATTGTTTAGGTGGTGATGATGGTGGTGCCAATGAAGTGCCACACGTTTGTCTTCGTCTTG 300
||||||||| || |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 247 ATTGTTTAGATGATGATGATGGTAGTACCAATGAAGTGCCACACGTTTGTCTTCGTCTTG 306
Query 301 GCCTGACTGATTACAGGACTTTTGTAGGAACGAATTTGAGTTCTCTGTGGGAGAGGTTCC 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 307 GCCTGACAGATTACAGGACTTTTGTAGGAACGAATTTGAGTTCTCTGTGGGAGAAGTTCC 366
Query 361 TTGTTCCATCAGAAGGTGACTCTGTAAGATGTCGACATACCTCAAGTCCATTGGGTAATG 420
||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 367 TTGTTACATCAGAAGATGACTCTGTTAGATGTCGACACACCTCAAGTCCATTGGGAAATG 426
Query 421 GTGCAGTTATCGAGACTTCTGACAAGAAGATTATTGTGTTACGCCGGAGTAATAATGTCG 480
||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 427 GTGCAGTTATCGAAACTTCTGATAAGAAGATTATTGTGTTACGTCGGAGTAATAATGTTG 486
Query 481 GGGAATTTCCAGGTCACTATGTATTCCCTGGGGGACATCCAGAGCCAACAGCAGTAGGCA 540
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 487 GGGAATTTCCAGGACACTATGTATTCCCTGGGGGCCATCCAGAGCCAACAGCAGTAGGTA 546
Query 541 TTGATTATCATCAGCTTGAAAATGATGTTCAAACCGGTGAAGTTTTAAACAAGAAGGTAA 600
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 547 TTGATTATCATCAGCTTGAAAACAATGTTCAAACCGGTGAGGTTTTAAACAAGAAGGTAA 606
Query 601 CTCAAGAAATGTTTGACAGTATTATCTGTGAAGTTGTTGAAGAAACTGGAATACCAGCAT 660
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 607 CTCAAGAAATGTTTGATAGCATTATCTGTGAAGTTGTCGAAGAAACTGGAATACCAGCAT 666
Query 661 CATCACTTAGCCCGCCTCTCTTCATCGGTATATCTCGTAGGGAGTTGAATGTACGACCAG 720
||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 667 CATCACTTAGCTCGCCTCTCTTCATCGGTATATCTCGAAGGGAGTTGAATGTAAGACCAG 726
Query 721 CTATGTTTTTCTACCTCAAGTGTAGTCATCATTCAGATGATATTCCAAGATTATACTCTA 780
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 727 CTATGTTTTTCTACCTCAAGTGTAGTCATCATTCAGATGACATTCAAAGATTATACTCTA 786
Query 781 GCGCTGAAGATGGGTTCGAGTCAACACAGCTCCACACTGTCTCATTGGATGAGCTGAAGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GCGCTGAAGATGGGTTCGAGTCAACACAGCTCCACACTGTCTCATTGGATGAGCTGAAGA 846
Query 841 TGATGACATCGAGAATGCCTGGTTGCCATCATGGTGGATTCGCTCTCTACGAACTGATGC 900
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 847 TGATGACATCGAGAATGCCAGGTTGCCATCATGGCGGATTCGCTCTCTACGAACTGATGC 906
Query 901 TTCAACGCTTTCAAGAACACTAAGGAAACGGCGTTAATAGCAACGTAAGAGGAA-ATACA 959
||||||| | |||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 907 TTCAACG-TCTCAAGAACACTAAGGAAACGTCTTTAATAGCAACGTAAGAGGAAGATACT 965
Query 960 TAAACTTTACACCAAGTTGTG--TTATGGTTTGCTAATGATCATGTCATTTTCGAGTAAA 1017
||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 966 TAAACTTTACACCTAGTTGTGAATTATTGTTTGCTAATGATCATGTCATTTTCGAGTAAC 1025
Query 1018 TTTTATTA--T-AAT--T-TTAA-----AAA-TCCATGATAATGAGTAACTG--AT-TAA 1062
|||||||| | || | |||| ||| ||||||||||||||||||| || |||
Sbjct 1026 TTTTATTAGATTAACCGTATTAATTTGTAAAATCCATGATAATGAGTAACTATCATGTAA 1085
Query 1063 TTCAGGGATCGAAAGCTCTAAGTTATGTTCGATAAAAGGTTAATTTGTTTACAT 1116
||||||||| ||||||||||||||||||| ||||| ||||| ||||||| ||||
Sbjct 1086 TTCAGGGATAGAAAGCTCTAAGTTATGTTGGATAACAGGTTCATTTGTTCACAT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5