BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485002
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 1367 0.0
> AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062
Score = 1367 bits (740), Expect = 0.0
Identities = 879/940 (94%), Gaps = 34/940 (4%)
Strand=Plus/Plus
Query 6 ATTGGAGCAATGGAGATTGATAGAGAAGATGGAAGAACGCCGAATCAGCTGAGACCTCTT 65
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 114 ATTGTAGCAATGGAGATTGATAGAGAAGATGGAAGAACACCAAATCAGCTGAGACCTCTT 173
Query 66 GCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGTTGGTCACAAGGGGAT 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GCTTGTTCCCGTAATATCCTTCATCGTCCTCATGGCTCTGCTAGTTGGTCACAAGGGGAT 233
Query 126 ACCAAAGTTCTAGCTGCAGTTTATGGACCTAAAGCAGGAACGAAGAAGAATGAAAATGCT 185
|| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 234 ACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAAAAGAACGAAAATGCT 293
Query 186 GAGAAGGCTTGTTTTGAAGTCATATGGAAGCCTAAAACTGGGCAGATTGGAAAAGTAGAA 245
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 294 GAGAAGGCTTGTTTTGAAGTCATATGGAAGCCTAAATCCGGGCAGATTGGAAAAGTTGAA 353
Query 246 AAGGAGTATGAGATGATAATGAAAAGGACAATACAGAGTATTTGTGTTTTGACAGTTAAT 305
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 354 AAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGTGTTTTGACTGTTAAT 413
Query 306 CCAAATACCACCACCTCAGTGATAATTCAGGTTGTACATGATGATGGTTCTCTTCTACCG 365
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 414 CCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGATGGTTCTCTTCTACCA 473
Query 366 TGTGCGATAAATGCAGCATGTGCAGCGCTTGTCGATGCAGGAATCCCTATGAAGCATCTC 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TGTGCGATAAATGCAGCATGTGCAGCGCTTGTCGATGCAGGAATCCCTATGAAGCATCTG 533
Query 426 GCTGTTGCTATATGTTGTTGCCTGGCTGATAATGGATATCTCGTACTCGATCCAAACAAG 485
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 534 GCTGTTGCTATATGCTGTTGCCTGGCTGAGAATGGATATCTCGTACTCGATCCAAACAAG 593
Query 486 CTTGAAGAAAAGAAAATGACGGCCTTTGCTTATTTAGTCTTTCCAAATACAACTCTCTCT 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CTTGAAGAAAAGAAAATGACGGCCTTTGCTTATTTAGTCTTTCCAAATACAACTCTCTCT 653
Query 546 GTTCTTCCGGAAGGATCATCAGTAGCGGAAGGCGAGCCAGTAGAGCATGGGATCATTACA 605
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 654 GTTCTTCCGGAAGGGTCATCAGTAGCGGAAGGCGAGCCAGTAGAGCATGGGATCATCACA 713
Query 606 TCAGTTACCCATGGAGTAATGTCAGTGGACGATTATTTCCTGTGTGTAGAGAACGGCCGT 665
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCAATTACACATGGAGTAATGTCAGTGGACGATTATTTCCTGTGTGTAGAGAACGGCCGT 773
Query 666 GCTGCTACGGCTAGTTTATCTGCATTTTTTAGAAAGAACTTCCAACAAAGCCAAAAAGAT 725
|||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 774 GCTGCTACGGCTAGTTTATCTGCATTTTTTAGAAAGAACTTCCAACAAAG---------T 824
Query 726 TCATCCAAGGCCGGGTAAAGAGCACAAATTCATAATGGTTTGCATGAGATTTTGA--CGG 783
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 825 TCATCCAAGGCTGGGTAAA-AGCACAAATTCATAATGGTTTGCATGAGATTTTGAAACGG 883
Query 784 TTTCATATTTCTCCTGTTGTAGCTTTTATAGAATCCTTATCGTCGATGTGTCTAATCAAA 843
||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 884 TTTCATATTACTCCTGTTGTAGCTTTGATAGAATCCTTGTCGTCTATGTGTCTAATCAAA 943
Query 844 A-TC------TAGT-----AT---C--GT-T-A---GATATGTGAACAGATGAACCTCGT 881
| || |||| || | || | | ||||||||||||||||||||||||
Sbjct 944 AATCAAAAGCTAGTGGCCTATTATCTAGTATCATTAGATATGTGAACAGATGAACCTCGT 1003
Query 882 ATCTTTAATACAAATGGTAGCCATGGTCAGAGCTATTGAT 921
||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 ATCTTTAATACAAATGGTAGCCATGGTCAGAGCTATTGAT 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5