BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485004
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46230.1 | Symbols: ATHSP17.4, HSP17.4 | heat shock protein ... 911 0.0
AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily pro... 534 3e-151
> AT3G46230.1 | Symbols: ATHSP17.4, HSP17.4 | heat shock protein
17.4 | chr3:16984118-16984841 REVERSE LENGTH=724
Length=724
Score = 911 bits (493), Expect = 0.0
Identities = 580/622 (93%), Gaps = 6/622 (1%)
Strand=Plus/Plus
Query 1 AAACGATGTCTCTAATTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCGACCCAT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 AAACGATGTCTCTAGTTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCGACCCAT 163
Query 61 TTTCACTAGACGTATGGGATCCATTCGAAGGATTCATGACGCCTGGGTTGACAAACGCAC 120
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 164 TTTCACTAGACGTATGGGATCCGTTCGAAGGATTCTTGACGCCCGGGTTGACAAACGCAC 223
Query 121 CTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAGACACCTGAGG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 224 CTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAGACACCTGAAG 283
Query 181 CGCACGTGTTCAAGGCGGACTTGCCGGGGCTTAAGAAGGAAGAGGTGAAGGTGGAGGTTG 240
|||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 284 CGCATGTGTTCAAGGCGGACGTGCCTGGGCTTAAGAAGGAAGAGGTGAAGGTGGAGGTTG 343
Query 241 AAGATGGGAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGAAGAGAAGAGTG 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AAGATGGTAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGAAGAGAAGAGTG 403
Query 301 ACA-AGTGGCACCGTGTGGAGAGGTCGAGTGGGAAGTTCATTAGGAGGTTTAGATTGCCG 359
||| | ||||||||||||||| |||| |||||||||||||| ||||||||| | |||||
Sbjct 404 ACACA-TGGCACCGTGTGGAGCGGTCAAGTGGGAAGTTCATGAGGAGGTTTCGGTTGCCA 462
Query 360 GAGAATGCGAAGGTGGAGGAAGTGAAGGCGAGTATGGAGAACGGTGTGTTGTCCGTTACG 419
|||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||||
Sbjct 463 GAGAATGCAAAGGTGGAGGAAGTAAAGGCGAGTATGGAGAATGGGGTGTTGTCGGTTACG 522
Query 420 GTGCCGAAAGTGCCGGAGAGTAAGCCCGAGGTCAAGTCCATTGATATCTCTGGTTAAGAG 479
||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 523 GTGCCGAAAGTTCAGGAGAGTAAGCCGGAGGTCAAGTCCGTTGATATCTCTGGTTAAGAG 582
Query 480 GAACTTTGAAGTTGGAAAGCTAAAGACAACAATGTGTGATAGTGTAAAATAAATAGTGCG 539
||||| ||||||||||||||| |||||| ||| ||||||||||| |||||||| |||||
Sbjct 583 GAACTCTGAAGTTGGAAAGCTTAAGACAGTAATATGTGATAGTGTGAAATAAATGGTGCG 642
Query 540 AATTTCCTTTCTGCTTCTTTCTCCTGTAATCACCGATCTCGTTGTATCGATATAAGTAAA 599
| |||||||||| ||| ||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 643 ACTTTCCTTTCTTCTT-TTTCT--TGTAATCACCAATCTCGTTGTATCAATATAAGTAA- 698
Query 600 TCTTAATAAAAGAGTGTTTTGA 621
|| |||||||||||||||||||
Sbjct 699 TCGTAATAAAAGAGTGTTTTGA 720
> AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:19980462-19981109 FORWARD LENGTH=648
Length=648
Score = 534 bits (289), Expect = 3e-151
Identities = 419/483 (87%), Gaps = 4/483 (1%)
Strand=Plus/Plus
Query 1 AAACGATGTCTCTAATTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCGACCCAT 60
||||||||||||||||||| ||| | || ||||| ||||||||||||| ||||| || |
Sbjct 44 AAACGATGTCTCTAATTCCAAGCATCTTCGGAGGAAGAAGAACAAACGTTTTCGATCCGT 103
Query 61 TTTCACTAGACGTATGGGATCCATTCGAAGGATTCATGACGCC-T--GGGTTGACAAACG 117
| || || || || | ||||| |||||||| ||| ||||||| | || ||| ||||||
Sbjct 104 TCTCGCTGGATGTTTTCGATCCGTTCGAAGGTTTCTTGACGCCGTCAGGATTGGCAAACG 163
Query 118 CACCTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAGACACCTG 177
|||| || | ||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 164 CACCCGCTATGGATGTGGCAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAGACACCTG 223
Query 178 AGGCGCACGTGTTCAAGGCGGACTTGCCGGGGCTTAAGAAGGAAGAGGTGAAGGTGGAGG 237
|||||||||||||||||||||| || ||||| || | ||||||||||||||| |||||||
Sbjct 224 AGGCGCACGTGTTCAAGGCGGATTTACCGGGACTGAGGAAGGAAGAGGTGAAAGTGGAGG 283
Query 238 TTGAAGATGGGAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGAAGAGAAGA 297
|||| ||||| ||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 284 TTGAGGATGGCAACATACTTCAGATAAGTGGAGAGAGGAGCAATGAGAATGAAGAGAAGA 343
Query 298 GTGACAAGTGGCACCGTGTGGAGAGGTCGAGTGGGAAGTTCATTAGGAGGTTTAGATTGC 357
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 344 ATGACAAGTGGCACCGTGTGGAGCGGTCGAGTGGGAAGTTCACGAGGAGGTTTAGGCTGC 403
Query 358 CGGAGAATGCGAAGGTGGAGGAAGTGAAGGCGAGTATGGAGAACGGTGTGTTGTCCGTTA 417
|||||||||| ||| |||||||| | || || |||||||| || ||||||||||| ||||
Sbjct 404 CGGAGAATGCTAAGATGGAGGAAATCAAAGCCAGTATGGAAAATGGTGTGTTGTCGGTTA 463
Query 418 CGGTGCCGAAAGTGCCGGAGAGTAAGCCCGAGGTCAAGTCCATTGATATCTCTGGTTAAG 477
| ||||| || ||||| |||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 464 CCGTGCCCAAGGTGCCAGAGAAAAAGCCAGAGGTTAAGTCCATTGATATCTCTGGTTAA- 522
Query 478 AGG 480
|||
Sbjct 523 AGG 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5