BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485009

Length=287
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46310.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   344    2e-94


> AT3G46310.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G46300.1); 
Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17017451-17017825 
REVERSE LENGTH=375
Length=375

 Score =  344 bits (186),  Expect = 2e-94
 Identities = 257/289 (89%), Gaps = 13/289 (4%)
 Strand=Plus/Plus

Query  1    ATGGCGGAGGTAGAGTTCGTACGGTCTATCAGCCACGGTGGTAG-CCAGGGTCGTACTAC  59
            ||||| |||||||||||||||| |||||||||||| |  ||||| || | ||||||||||
Sbjct  97   ATGGCTGAGGTAGAGTTCGTACAGTCTATCAGCCAAGACGGTAGTCC-GCGTCGTACTAC  155

Query  60   AGCGGTGGAAAGCTTATCTTGTAGGCAAATGTACCTTAGGAGCTATACGTTCTCaaaaaa  119
             ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct  156  GGCGGTGGAAAGTTTATCTTGTAGGCAAATGTATCTTAGGAGCTATACGTTCTCAAGAAA  215

Query  120  aGAGGAGAACGAAGACGGTGATGGAGGTGGCGGAGGAGCAGGGAGGAAGAAGGCGGGGAA  179
            ||||||||||||||||         |||||||||||||||||||||||||||  || |||
Sbjct  216  AGAGGAGAACGAAGAC---------GGTGGCGGAGGAGCAGGGAGGAAGAAGTTGGCGAA  266

Query  180  GAAATATACAAGGCCGAGTAAAAGGGCGTTACTT-AGGAGAGTTGTGGTCCGATTCACAT  238
            |||| |||  ||| ||||||||||||||| |||| ||| || ||||||||||||||||||
Sbjct  267  GAAAGATATGAGGACGAGTAAAAGGGCGTCACTTAAGG-GATTTGTGGTCCGATTCACAT  325

Query  239  GGAAATGTTTGTCTTGTACTTGCCCTAATAAGTTTGATCTTAAACAGTG  287
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  326  GGAAATGTTTGTCTTGTACTTGCCCTAATAAGTTTGATCTTAAACAGTG  374



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13220417987


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5